Rorug06G0442000

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014174
Physical Location & Seq
Forward (+)
57409093 .. 57409877
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0442000.1

Sequence Viewer

Length: 411 bp
ATGGCTGTTGCTAGCGCTCACAGGATAAGAGGAGGGTCTCTGACGGCGGCTGCCGCCGCTCTCTCCGTCACGGAATCAAAACTGAAGGTCAAGGCTTGCTCTCCGGAGGTCTGCAAATTCCTCGGCATCCCTGACCCTTCTGACCGATCTCGATCTCCCACTGCTCTCTTAATTTCCAAGTTCATCAGACTCCACAACAATCAGAGCCCTGGAATCAAGGACCGGAATTGGGAGCAGAACTTGAAGACATTATTGCACGGCAAAGACAGAGTTGGGTTGCCGGAGGTCACCAGATTGCTCTCACCGGAATTTACCTATTCCACTATCAAAAGCACCGATGCAACAGCCACTTTTGGGCAGATCGAGGCTAACAAATCCAAGAAAATAACTGGGAAGGCCAGTAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

136

Amino Acids

14.7

Weight (kDa)

10.11

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74460
fragaria_vesca FvH4_5g14860
malus_domestica MD06G1194000.v1.1 MD14G1201200.v1.1
prunus_persica Prupe.5G194400_v2.0.a1
pyrus_communis pycom06g17190 pycom14g16670
rosa_chinensis RchiOBHm_Chr7g0181521
rosa_laevigata RLG00000005186
rosa_multiflora Rmu_sc0004621.1_g000032
rosa_roxburghii Rroxscaffold_3G00271930
rosa_rugosa Rorug06G0442000
rosa_samantha Rh7AG044100 Rh7BG043200 Rh7CG045000 Rh7DG043700
rosa_wichuraiana Rw7G003650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 3 cut(s) 47, 54, 57
AcsI RAATTY 2 cut(s) 116, 308
AcuI CTGAAG 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 229, 354
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 116, 308
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 280, 294
AsuNHI GCTAGC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 60, 274
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 48, 51, 54, 57
BlsI GCNGC 4 cut(s) 49, 52, 55, 58
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 135, 328
BmtI GCTAGC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 121, 208
BsaWI WCCGGW 3 cut(s) 103, 222, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 354
Bse1I ACTGG 2 cut(s) 394, 399
Bse8I GATNNNNATC 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 121, 208
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 229, 354
BseNI ACTGG 2 cut(s) 394, 399
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 398
BsiSI CCGG 4 cut(s) 104, 223, 281, 305
BslI CCNNNNNNNGG 2 cut(s) 229, 354
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 146, 152, 360
BspACI CCGC 3 cut(s) 47, 54, 57
BspANI GGCC 1 cut(s) 398
BspEI TCCGGA 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 42
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 2 cut(s) 394, 399
BssECI CCNNGG 2 cut(s) 121, 208
BssMI GATC 3 cut(s) 146, 152, 360
Bst2UI CCWGG 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 13, 97
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 149, 155, 363
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 146, 152, 360
BstMWI GCNNNNNNNGC 2 cut(s) 53, 56
BstNI CCWGG 1 cut(s) 210
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 13, 97
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 220
CviJI RGCY 7 cut(s) 5, 50, 95, 207, 347, 368, 398
CviKI_1 RGCY 7 cut(s) 5, 50, 95, 207, 347, 368, 398
DpnI GATC 3 cut(s) 148, 154, 362
DpnII GATC 3 cut(s) 146, 152, 360
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 209
Fnu4HI GCNGC 4 cut(s) 48, 51, 54, 57
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 4 cut(s) 48, 51, 54, 57
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 48, 51, 54, 57
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 398
HapII CCGG 4 cut(s) 104, 223, 281, 305
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 3 cut(s) 74, 189, 213
HpaII CCGG 4 cut(s) 104, 223, 281, 305
HphI GGTGA 2 cut(s) 280, 294
Hpy188I TCNGA 4 cut(s) 42, 142, 188, 204
Hpy188III TCNNGA 2 cut(s) 104, 150
HpyAV CCTTC 3 cut(s) 79, 147, 388
HpyCH4V TGCA 3 cut(s) 114, 256, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 56
HspAI GCGC 1 cut(s) 15
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 146, 152, 360
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 135, 328
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 67, 286
MalI GATC 3 cut(s) 148, 154, 362
MbiI CCGCTC 1 cut(s) 59
MboI GATC 3 cut(s) 146, 152, 360
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 4 cut(s) 116, 171, 226, 308
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 6 cut(s) 23, 26, 100, 131, 277, 358
MroI TCCGGA 1 cut(s) 103
MseI TTAA 1 cut(s) 170
MspI CCGG 4 cut(s) 104, 223, 281, 305
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 53, 56
NdeII GATC 3 cut(s) 146, 152, 360
NheI GCTAGC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 67, 286
PfeI GAWTC 2 cut(s) 74, 213
PkrI GCNGC 4 cut(s) 49, 52, 55, 58
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 208
PspEI GGTNACC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 208
PspPI GGNCC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 4 cut(s) 48, 51, 54, 57
Sau3AI GATC 3 cut(s) 146, 152, 360
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 209
SetI ASST 4 cut(s) 90, 111, 288, 317
SfaNI GCATC 2 cut(s) 135, 328
SinI GGWCC 1 cut(s) 220
Sse9I AATT 4 cut(s) 116, 171, 226, 308
SsiI CCGC 3 cut(s) 47, 54, 57
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 208
TaqI TCGA 2 cut(s) 151, 363
TaqII GACCGA 1 cut(s) 159
TasI AATT 4 cut(s) 116, 171, 226, 308
TauI GCSGC 3 cut(s) 50, 56, 59
TfiI GAWTC 2 cut(s) 74, 213
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 67, 286
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 67, 286
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 55, 86
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 2 cut(s) 116, 308
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.