Rorug06G0460500

Phosphatidylinositol 4-kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013673
Physical Location & Seq
Reverse (-)
58686362 .. 58687243
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0460500.1

Sequence Viewer

Length: 585 bp
ATGGAATCTACTACCACACCAGAGATAGCAAAGAAGCTAAGCAACATGTTACGTCTAATGAAGAAACGTGGCAAGATCCTAGGCAAGTCGGTAAACGACTTCATGCTCCGCCACCACACCACCCTCGACTCAGTCCGCTGCCGCTCACTCGACGACGTGCACGTGTCATTCGTGTACCCCATGGAGTACGAGTTCAGCTGCAGCAGCAGCCCACCGCACCACCAACGGTCGCGCACACCCGGCCACCTTACCAGCAGCAAGCGCAACAACACCAACTACTACAACGGCCGTTATCATCACCAGCACTCGCGGCGGTCCGTTTACGTGCCGATGATGTGCGAGGACGTTTTGGGGAGTAAGAATGTGTCCTTCTGCGGCGGTGACGTGGTGGAGCCGCTGCGGCGGAGGCCGAGGGTGAGGAGGGTTAGGATAACGGAGTGGGAGCCGTTATTTCCGTTGAACACCAGTGAAGAAGAGGAGGAGGAGGAGTGGCATGTGGACAAGGCAGCGCAGGAATTCATCGACAAGTTTTATCGGGATCTAATGTTGCAAAAGTGGAATATGGTAGCAGATCGATGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase

Protein Analysis

194

Amino Acids

23.03

Weight (kDa)

8.96

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13340 FvH4_5g13340 FvH4_5g13340
malus_domestica MD14G1217200.v1.1
prunus_persica Prupe.5G210600_v2.0.a1 Prupe.5G210600_v2.0.a1 Prupe.5G210600_v2.0.a1
pyrus_communis pycom14g17990
rosa_chinensis RchiOBHm_Chr7g0183801
rosa_laevigata RLG00000005022
rosa_multiflora Rmu_sc0003610.1_g000041
rosa_roxburghii Rroxscaffold_3G00270200
rosa_rugosa Rorug06G0460500
rosa_samantha Rh7AG061200 Rh7BG061200 Rh7CG062900 Rh7DG061300
rosa_wichuraiana Rw7G005080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 144
AccII CGCG 2 cut(s) 232, 310
AclWI GGATC 2 cut(s) 70, 546
AcoI YGGCCR 2 cut(s) 241, 286
AcsI RAATTY 1 cut(s) 515
AcvI CACGTG 1 cut(s) 163
AfaI GTAC 2 cut(s) 176, 188
AflIII ACRYGT 2 cut(s) 45, 162
AgsI TTSAA 1 cut(s) 460
AjiI CACGTC 2 cut(s) 157, 385
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 37, 198
AluI AGCT 2 cut(s) 37, 198
Alw21I GWGCWC 1 cut(s) 162
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 2 cut(s) 70, 546
AoxI GGCC 3 cut(s) 241, 286, 407
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 8 cut(s) 138, 198, 201, 204, 207, 255, 397, 506
ApoI RAATTY 1 cut(s) 515
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 3 cut(s) 234, 264, 511
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 290, 392, 427
AvaII GGWCC 1 cut(s) 315
AvrII CCTAGG 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 162
BbrPI CACGTG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 8 cut(s) 125, 185, 213, 216, 219, 267, 384, 518
BceAI ACGGC 3 cut(s) 273, 301, 430
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 199
BglI GCCNNNNNGGC 1 cut(s) 400
BlnI CCTAGG 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 315
BmgBI CACGTC 2 cut(s) 157, 385
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 393, 444
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 566
Bpu1102I GCTNAGC 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 574
BsaAI YACGTR 2 cut(s) 163, 325
BsaJI CCNNGG 3 cut(s) 79, 180, 410
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 473, 503
Bse1I ACTGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 574
BseDI CCNNGG 3 cut(s) 79, 180, 410
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 5 cut(s) 433, 491, 494, 497, 500
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 286
BseXI GCAGC 8 cut(s) 125, 185, 213, 216, 219, 267, 384, 518
Bsh1236I CGCG 2 cut(s) 232, 310
Bsh1285I CGRYCG 2 cut(s) 230, 289
BshFI GGCC 3 cut(s) 243, 288, 409
BshVI ATCGAT 1 cut(s) 574
BsiEI CGRYCG 2 cut(s) 230, 289
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 240
BsnI GGCC 3 cut(s) 243, 288, 409
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 75, 538, 571
Bsp1720I GCTNAGC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 180
BspANI GGCC 3 cut(s) 243, 288, 409
BspCNI CTCAG 1 cut(s) 143
BspDI ATCGAT 1 cut(s) 574
BspFNI CGCG 2 cut(s) 232, 310
BspLI GGNNCC 2 cut(s) 393, 444
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 2 cut(s) 70, 546
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 79, 180, 410
BssMI GATC 3 cut(s) 75, 538, 571
BssT1I CCWWGG 2 cut(s) 79, 180
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 468
BstBAI YACGTR 2 cut(s) 163, 325
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 38, 130
BstDSI CCRYGG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 232, 310
BstHHI GCGC 3 cut(s) 234, 264, 511
BstKTI GATC 3 cut(s) 78, 541, 574
BstMBI GATC 3 cut(s) 75, 538, 571
BstMCI CGRYCG 2 cut(s) 230, 289
BstMWI GCNNNNNNNGC 7 cut(s) 204, 207, 240, 261, 310, 400, 406
BstNSI RCATGY 2 cut(s) 49, 497
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 2 cut(s) 232, 310
BstV1I GCAGC 8 cut(s) 125, 185, 213, 216, 219, 267, 384, 518
BstX2I RGATCY 2 cut(s) 75, 538
BstYI RGATCY 2 cut(s) 75, 538
BstZI CGGCCG 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 574
BsuRI GGCC 3 cut(s) 243, 288, 409
BsuTUI ATCGAT 1 cut(s) 574
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 2 cut(s) 157, 385
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 3 cut(s) 234, 264, 511
Cfr13I GGNCC 1 cut(s) 315
ClaI ATCGAT 1 cut(s) 574
CpoI CGGWCCG 1 cut(s) 315
Csp6I GTAC 2 cut(s) 175, 187
CspI CGGWCCG 1 cut(s) 315
CviAII CATG 4 cut(s) 46, 103, 181, 494
CviJI RGCY 8 cut(s) 37, 198, 210, 243, 288, 394, 409, 445
CviKI_1 RGCY 8 cut(s) 37, 198, 210, 243, 288, 394, 409, 445
CviQI GTAC 2 cut(s) 175, 187
DdeI CTNAG 2 cut(s) 38, 130
DpnI GATC 3 cut(s) 77, 540, 573
DpnII GATC 3 cut(s) 75, 538, 571
EaeI YGGCCR 2 cut(s) 241, 286
EagI CGGCCG 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
EciI GGCGGA 2 cut(s) 98, 418
EclXI CGGCCG 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 79, 180
Eco47I GGWCC 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 515
EcoT14I CCWWGG 2 cut(s) 79, 180
ErhI CCWWGG 2 cut(s) 79, 180
FaeI CATG 4 cut(s) 49, 106, 184, 497
FaiI YATR 5 cut(s) 47, 104, 182, 495, 563
FatI CATG 4 cut(s) 45, 102, 180, 493
FspBI CTAG 1 cut(s) 80
GlaI GCGC 3 cut(s) 233, 263, 510
HaeIII GGCC 3 cut(s) 243, 288, 409
HapII CCGG 1 cut(s) 240
HhaI GCGC 3 cut(s) 234, 264, 511
Hin1II CATG 4 cut(s) 49, 106, 184, 497
Hin6I GCGC 3 cut(s) 232, 262, 509
HinP1I GCGC 3 cut(s) 232, 262, 509
HinfI GANTC 2 cut(s) 5, 128
HpaII CCGG 1 cut(s) 240
HphI GGTGA 3 cut(s) 290, 392, 427
Hpy166II GTNNAC 5 cut(s) 94, 160, 175, 322, 499
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 5 cut(s) 94, 160, 175, 322, 499
Hpy99I CGWCG 2 cut(s) 155, 158
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 7 cut(s) 52, 67, 156, 162, 324, 345, 384
HpyCH4V TGCA 3 cut(s) 160, 201, 550
HpyF10VI GCNNNNNNNGC 7 cut(s) 204, 207, 240, 261, 310, 400, 406
HpyF3I CTNAG 2 cut(s) 38, 130
HpySE526I ACGT 7 cut(s) 52, 67, 156, 162, 324, 345, 384
Hsp92II CATG 4 cut(s) 49, 106, 184, 497
HspAI GCGC 3 cut(s) 232, 262, 509
Kzo9I GATC 3 cut(s) 75, 538, 571
LmnI GCTCC 3 cut(s) 111, 391, 442
LpnPI CCDG 6 cut(s) 33, 253, 265, 314, 478, 497
Lsp1109I GCAGC 8 cut(s) 125, 185, 213, 216, 219, 267, 384, 518
LweI GCATC 1 cut(s) 566
MaeI CTAG 1 cut(s) 80
MaeII ACGT 7 cut(s) 52, 67, 156, 162, 324, 345, 384
MaeIII GTNAC 2 cut(s) 48, 380
MalI GATC 3 cut(s) 77, 540, 573
MbiI CCGCTC 1 cut(s) 144
MboI GATC 3 cut(s) 75, 538, 571
MboII GAAGA 3 cut(s) 73, 482, 485
MflI RGATCY 2 cut(s) 75, 538
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 515
MlyI GAGTC 1 cut(s) 122
MspA1I CMGCKG 3 cut(s) 138, 198, 397
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 240
MvnI CGCG 2 cut(s) 232, 310
MwoI GCNNNNNNNGC 7 cut(s) 204, 207, 240, 261, 310, 400, 406
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 180
NdeII GATC 3 cut(s) 75, 538, 571
NlaIII CATG 4 cut(s) 49, 106, 184, 497
NlaIV GGNNCC 2 cut(s) 393, 444
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 2 cut(s) 49, 497
PciI ACATGT 1 cut(s) 45
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 168
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 131
PleI GAGTC 1 cut(s) 122
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 2 cut(s) 163, 325
PscI ACATGT 1 cut(s) 45
PspCI CACGTG 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 393, 444
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 2 cut(s) 75, 538
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 2 cut(s) 176, 188
RsaNI GTAC 2 cut(s) 175, 187
Rsr2I CGGWCCG 1 cut(s) 315
RsrII CGGWCCG 1 cut(s) 315
Sau3AI GATC 3 cut(s) 75, 538, 571
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 315
Sse9I AATT 1 cut(s) 515
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 79, 180
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 7 cut(s) 55, 70, 159, 165, 327, 348, 387
TaqI TCGA 4 cut(s) 126, 150, 522, 574
TasI AATT 1 cut(s) 515
TauI GCSGC 5 cut(s) 144, 313, 378, 397, 403
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 8 cut(s) 138, 198, 201, 204, 207, 255, 397, 506
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 74, 91, 508
TspGWI ACGGA 3 cut(s) 307, 444, 449
TspRI CASTG 1 cut(s) 472
Tth111I GACNNNGTC 1 cut(s) 131
VneI GTGCAC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 515
XceI RCATGY 2 cut(s) 49, 497
XmaJI CCTAGG 1 cut(s) 79
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.