Rorug07G0025700

Translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002846
Physical Location & Seq
Forward (+)
1817343 .. 1818320
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0025700.1

Sequence Viewer

Length: 978 bp
ATGGCTCTTCCCGTACTCTTCCTTCTTTTGCTCTCCATTTCCTTCACCGAATCGAAGCTCACTGTTGACTACTACAAGAATACATGCCCCGAATTTCAGAGAATCGTCCGGGAGACGGTGACCCTGAAGCAATCTGCGCAACCCACCACAGCAGCAGGCACTCTCCGCGTCTTCTTCCATGACTGCATGGTGGAGGGCTGTGATGCATCAATACTAATTGCCTCAAACCATTTCAATGTGGCGGAGCGCGACGCTGAGATAAACCACTCCCTATCTGCAGATGCCTTTGACCTTGTGACCCGTGCCAAGACTGCCCTTGAGCTCACCTGCCCCGGCATTGTGTCATGTGCTGACATTCTCGCAGAAGCAGCACGAGACCTTGTGACAATGGCGGGTGGTCCATACTACAAAGTGCGCTTGGGACGCAAAGATGGTTTTGTTTCCAAAGCTTCAAGGGTGGAGGGGAATCTAGCCAGAGCCAACCAAACTATTGATTCCATCATCGACCTCTTCGCTGCTAAAGGGTTTACAGTCGAAGAAATGGTTGCTTTAACCGGTGCACACACAATTGGGTTCTCTCACTGCAAGGAATTCACAGACCGGCTTTTCCATTACAGCAAAACCACCCCAACAGACCCAGAGCTCCACCCAAAGTTGGCCGAAGGATTGAAGAGGACCTGTGCCAATTACACAACAGACACAACCATGTCTGCCTTCAACGATGTGATCACACCAGGCAAGTTTGATAACGTCTACTATCAAAATCTTAAGAGGGGGCTGGGGCTCTTGTCTTCAGACCATGCTCTGGTTAAGGACCCAAGAACAAGGCCTTTGGTTGAGCTGTACTCTACAAACCAGGCTGCATTCTTCAAAGCTTTTGCTCGTGCCATGGAGAAGGTTAGTATTCATGAAATCAAGACCGGGCGTAAGGGAGAGGTGAGGCACAGGTGTGATGCGTTTAACTCCATTCGCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP_EFTU IF-2

Protein Analysis

325

Amino Acids

35.96

Weight (kDa)

8.07

Isoelectric Point (pI)

24.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 36 - 285 1.8e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 805
AccI GTMKAC 1 cut(s) 753
AccII CGCG 3 cut(s) 168, 249, 972
AciI CCGC 3 cut(s) 166, 242, 392
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 92, 590
AcuI CTGAAG 2 cut(s) 146, 777
AfaI GTAC 2 cut(s) 15, 845
AfiI CCNNNNNNNGG 3 cut(s) 115, 655, 805
AflII CTTAAG 1 cut(s) 767
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 5 cut(s) 235, 453, 670, 718, 871
AjnI CCWGG 2 cut(s) 733, 855
AleI CACNNNNGTG 1 cut(s) 948
AluBI AGCT 6 cut(s) 58, 322, 449, 643, 841, 875
AluI AGCT 6 cut(s) 58, 322, 449, 643, 841, 875
Alw21I GWGCWC 3 cut(s) 324, 562, 645
Alw26I GTCTC 2 cut(s) 107, 369
Alw44I GTGCAC 1 cut(s) 558
AoxI GGCC 2 cut(s) 657, 827
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 4 cut(s) 152, 368, 515, 860
ApoI RAATTY 2 cut(s) 92, 590
AsiGI ACCGGT 1 cut(s) 554
AspLEI GCGC 4 cut(s) 139, 249, 417, 974
AspS9I GGNCC 3 cut(s) 398, 675, 814
AsuC2I CCSGG 3 cut(s) 110, 333, 922
AsuHPI GGTGA 4 cut(s) 37, 130, 316, 949
AvaII GGWCC 3 cut(s) 398, 675, 814
BaeGI GKGCMC 1 cut(s) 562
BanII GRGCYC 3 cut(s) 324, 645, 786
BarI GAAGNNNNNNTAC 1 cut(s) 38
BauI CACGAG 2 cut(s) 372, 882
BbsI GAAGAC 2 cut(s) 163, 783
Bbv12I GWGCWC 3 cut(s) 324, 562, 645
BbvI GCAGC 4 cut(s) 164, 380, 502, 847
BccI CCATC 2 cut(s) 425, 506
BciT130I CCWGG 2 cut(s) 735, 857
BclI TGATCA 1 cut(s) 726
BcnI CCSGG 3 cut(s) 110, 333, 922
BcoDI GTCTC 2 cut(s) 107, 369
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 4 cut(s) 153, 369, 516, 861
BlsI GCNGC 4 cut(s) 154, 370, 517, 862
Bme1390I CCNGG 5 cut(s) 110, 333, 735, 857, 922
Bme18I GGWCC 3 cut(s) 398, 675, 814
BmgT120I GGNCC 3 cut(s) 398, 675, 814
BmiI GGNNCC 1 cut(s) 816
BmrFI CCNGG 5 cut(s) 110, 333, 735, 857, 922
BmsI GCATC 4 cut(s) 193, 215, 271, 943
BpiI GAAGAC 2 cut(s) 163, 783
BplI GAGNNNNNCTC 2 cut(s) 830, 862
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 3 cut(s) 110, 333, 922
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 331, 888
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 655, 805
Bse118I RCCGGY 2 cut(s) 554, 600
BseBI CCWGG 2 cut(s) 735, 857
BseDI CCNNGG 2 cut(s) 331, 888
BseLI CCNNNNNNNGG 3 cut(s) 115, 655, 805
BseMII CTCAG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 4 cut(s) 164, 380, 502, 847
BseYI CCCAGC 1 cut(s) 778
Bsh1236I CGCG 3 cut(s) 168, 249, 972
BshFI GGCC 2 cut(s) 659, 829
BshTI ACCGGT 1 cut(s) 554
BsiHKAI GWGCWC 3 cut(s) 324, 562, 645
BsiSI CCGG 5 cut(s) 109, 333, 555, 601, 921
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 3 cut(s) 115, 655, 805
BsmAI GTCTC 2 cut(s) 107, 369
BsmBI CGTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 2 cut(s) 659, 829
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 4 cut(s) 324, 562, 645, 786
Bsp143I GATC 1 cut(s) 726
Bsp19I CCATGG 1 cut(s) 888
BspACI CCGC 3 cut(s) 166, 242, 392
BspANI GGCC 2 cut(s) 659, 829
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 3 cut(s) 168, 249, 972
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 1 cut(s) 816
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 369
BsrFI RCCGGY 2 cut(s) 554, 600
BssAI RCCGGY 2 cut(s) 554, 600
BssECI CCNNGG 2 cut(s) 331, 888
BssMI GATC 1 cut(s) 726
BssSI CACGAG 2 cut(s) 372, 882
BssT1I CCWWGG 1 cut(s) 888
Bst2BI CACGAG 2 cut(s) 372, 882
Bst2UI CCWGG 2 cut(s) 735, 857
Bst4CI ACNGT 3 cut(s) 64, 118, 532
Bst6I CTCTTC 4 cut(s) 12, 23, 515, 665
BstAFI CTTAAG 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 255, 975
BstDSI CCRYGG 1 cut(s) 888
BstEII GGTNACC 1 cut(s) 118
BstFNI CGCG 3 cut(s) 168, 249, 972
BstHHI GCGC 4 cut(s) 139, 249, 417, 974
BstKTI GATC 1 cut(s) 729
BstMAI GTCTC 2 cut(s) 107, 369
BstMBI GATC 1 cut(s) 726
BstMWI GCNNNNNNNGC 5 cut(s) 136, 165, 311, 368, 423
BstNI CCWGG 2 cut(s) 735, 857
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 5 cut(s) 108, 331, 733, 855, 920
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 3 cut(s) 168, 249, 972
BstV1I GCAGC 4 cut(s) 164, 380, 502, 847
BstV2I GAAGAC 2 cut(s) 163, 783
BsuRI GGCC 2 cut(s) 659, 829
BtgI CCRYGG 1 cut(s) 888
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 2 cut(s) 60, 580
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 907
CfoI GCGC 4 cut(s) 139, 249, 417, 974
Cfr10I RCCGGY 2 cut(s) 554, 600
Cfr13I GGNCC 3 cut(s) 398, 675, 814
CseI GACGC 3 cut(s) 157, 260, 432
Csp6I GTAC 2 cut(s) 14, 844
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 8 cut(s) 84, 179, 187, 345, 706, 800, 889, 908
CviQI GTAC 2 cut(s) 14, 844
DdeI CTNAG 2 cut(s) 255, 975
DpnI GATC 1 cut(s) 728
DpnII GATC 1 cut(s) 726
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 4 cut(s) 12, 23, 515, 665
EarI CTCTTC 4 cut(s) 12, 23, 515, 665
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 2 cut(s) 322, 643
Eco130I CCWWGG 1 cut(s) 888
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 3 cut(s) 324, 645, 786
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 398, 675, 814
Eco53kI GAGCTC 2 cut(s) 322, 643
Eco57I CTGAAG 2 cut(s) 146, 777
Eco91I GGTNACC 1 cut(s) 118
EcoICRI GAGCTC 2 cut(s) 322, 643
EcoO109I RGGNCCY 2 cut(s) 675, 814
EcoO65I GGTNACC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 733, 855
EcoT14I CCWWGG 1 cut(s) 888
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 3 cut(s) 324, 645, 786
ErhI CCWWGG 1 cut(s) 888
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 8 cut(s) 87, 182, 190, 348, 709, 803, 892, 911
FaiI YATR 9 cut(s) 85, 180, 188, 346, 403, 707, 801, 890, 909
FaqI GGGAC 1 cut(s) 435
FatI CATG 8 cut(s) 83, 178, 186, 344, 705, 799, 888, 907
FauI CCCGC 1 cut(s) 385
FbaI TGATCA 1 cut(s) 726
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 153, 369, 516, 861
FriOI GRGCYC 3 cut(s) 324, 645, 786
Fsp4HI GCNGC 4 cut(s) 153, 369, 516, 861
FspBI CTAG 1 cut(s) 470
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 4 cut(s) 138, 248, 416, 973
GluI GCNGC 4 cut(s) 153, 369, 516, 861
GsaI CCCAGC 1 cut(s) 782
HaeIII GGCC 2 cut(s) 659, 829
HapII CCGG 5 cut(s) 109, 333, 555, 601, 921
HgaI GACGC 3 cut(s) 157, 260, 432
HhaI GCGC 4 cut(s) 139, 249, 417, 974
Hin1II CATG 8 cut(s) 87, 182, 190, 348, 709, 803, 892, 911
Hin6I GCGC 4 cut(s) 137, 247, 415, 972
HinP1I GCGC 4 cut(s) 137, 247, 415, 972
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 447, 873
HinfI GANTC 4 cut(s) 50, 102, 466, 494
HpaII CCGG 5 cut(s) 109, 333, 555, 601, 921
HphI GGTGA 4 cut(s) 37, 130, 316, 949
Hpy166II GTNNAC 4 cut(s) 67, 528, 560, 754
Hpy188I TCNGA 2 cut(s) 99, 796
Hpy188III TCNNGA 2 cut(s) 908, 916
Hpy8I GTNNAC 4 cut(s) 67, 528, 560, 754
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 5 cut(s) 32, 52, 656, 724, 889
HpyCH4III ACNGT 3 cut(s) 64, 118, 532
HpyCH4IV ACGT 1 cut(s) 750
HpyCH4V TGCA 6 cut(s) 186, 206, 278, 560, 585, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 165, 311, 368, 423
HpyF3I CTNAG 2 cut(s) 255, 975
HpySE526I ACGT 1 cut(s) 750
Hsp92II CATG 8 cut(s) 87, 182, 190, 348, 709, 803, 892, 911
HspAI GCGC 4 cut(s) 137, 247, 415, 972
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 1 cut(s) 726
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 244, 648
Lsp1109I GCAGC 4 cut(s) 164, 380, 502, 847
LweI GCATC 4 cut(s) 193, 215, 271, 943
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 750
MaeIII GTNAC 3 cut(s) 118, 295, 382
MalI GATC 1 cut(s) 728
MboI GATC 1 cut(s) 726
MboII GAAGA 8 cut(s) 10, 163, 166, 502, 548, 682, 783, 859
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 4 cut(s) 324, 562, 645, 786
MluCI AATT 5 cut(s) 92, 216, 567, 590, 685
MnlI CCTC 8 cut(s) 187, 232, 454, 518, 666, 765, 928, 933
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 4 cut(s) 551, 768, 810, 960
MslI CAYNNNNRTG 3 cut(s) 234, 704, 948
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 5 cut(s) 109, 333, 555, 601, 921
MspR9I CCNGG 5 cut(s) 110, 333, 735, 857, 922
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 2 cut(s) 735, 857
MvnI CGCG 3 cut(s) 168, 249, 972
MwoI GCNNNNNNNGC 5 cut(s) 136, 165, 311, 368, 423
NciI CCSGG 3 cut(s) 110, 333, 922
NcoI CCATGG 1 cut(s) 888
NdeII GATC 1 cut(s) 726
NlaIII CATG 8 cut(s) 87, 182, 190, 348, 709, 803, 892, 911
NlaIV GGNNCC 1 cut(s) 816
NmuCI GTSAC 3 cut(s) 118, 295, 382
NsbI TGCGCA 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 948
PagI TCATGA 1 cut(s) 907
PaqCI CACCTGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 1 cut(s) 863
PfeI GAWTC 4 cut(s) 50, 102, 466, 494
PflMI CCANNNNNTGG 1 cut(s) 805
PfoI TCCNGGA 1 cut(s) 108
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 4 cut(s) 154, 370, 517, 862
PpuMI RGGWCCY 2 cut(s) 675, 814
Psp124BI GAGCTC 2 cut(s) 324, 645
Psp5II RGGWCCY 2 cut(s) 675, 814
Psp6I CCWGG 2 cut(s) 733, 855
PspEI GGTNACC 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 778
PspGI CCWGG 2 cut(s) 733, 855
PspN4I GGNNCC 1 cut(s) 816
PspPI GGNCC 3 cut(s) 398, 675, 814
PspPPI RGGWCCY 2 cut(s) 675, 814
PstI CTGCAG 1 cut(s) 280
RsaI GTAC 2 cut(s) 15, 845
RsaNI GTAC 2 cut(s) 14, 844
RseI CAYNNNNRTG 3 cut(s) 234, 704, 948
SacI GAGCTC 2 cut(s) 324, 645
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 551, 768, 810, 960
SatI GCNGC 4 cut(s) 153, 369, 516, 861
Sau3AI GATC 1 cut(s) 726
Sau96I GGNCC 3 cut(s) 398, 675, 814
ScrFI CCNGG 5 cut(s) 110, 333, 735, 857, 922
SduI GDGCHC 4 cut(s) 324, 562, 645, 786
SfaNI GCATC 4 cut(s) 193, 215, 271, 943
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 3 cut(s) 398, 675, 814
SmiMI CAYNNNNRTG 3 cut(s) 234, 704, 948
SmlI CTYRAG 2 cut(s) 317, 767
SmoI CTYRAG 2 cut(s) 317, 767
Sse9I AATT 5 cut(s) 92, 216, 567, 590, 685
SseBI AGGCCT 1 cut(s) 829
SsiI CCGC 3 cut(s) 166, 242, 392
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 2 cut(s) 324, 645
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 5 cut(s) 108, 331, 733, 855, 920
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 3 cut(s) 64, 118, 532
TaiI ACGT 1 cut(s) 753
TaqI TCGA 3 cut(s) 53, 504, 534
TasI AATT 5 cut(s) 92, 216, 567, 590, 685
TatI WGTACW 1 cut(s) 843
TfiI GAWTC 4 cut(s) 50, 102, 466, 494
Tru1I TTAA 4 cut(s) 551, 768, 810, 960
Tru9I TTAA 4 cut(s) 551, 768, 810, 960
TscAI CASTG 2 cut(s) 67, 587
TseFI GTSAC 3 cut(s) 118, 295, 382
TseI GCWGC 4 cut(s) 152, 368, 515, 860
Tsp45I GTSAC 3 cut(s) 118, 295, 382
TspDTI ATGAA 2 cut(s) 896, 924
TspRI CASTG 2 cut(s) 67, 587
Van91I CCANNNNNTGG 1 cut(s) 805
Vha464I CTTAAG 1 cut(s) 767
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 3 cut(s) 398, 675, 814
XapI RAATTY 2 cut(s) 92, 590
XceI RCATGY 1 cut(s) 87
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.