Rorug01G0082600

Translation initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000231
Physical Location & Seq
Forward (+)
13452492 .. 13454329
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0082600.1

Sequence Viewer

Length: 591 bp
ATGAAATCGAAACCACAATCGAACTCATCGTCTTCCTCATTCTTCTCTCTCGTCCTCTTCTCCCTCTTCTCCTTCCTCGCACTCTCTTCATCCTCTACAATGGCCACCCTCGGCGGAATTCGCGACTCCCCTGCCGGCTCCGAGAACAGCCTCGAGACCGAATCCCTCGGTCGCTTCGCCGTCGACGAGCATAACAAGAAGGAGAATGCTCTGCTGGAGTTTGTTCGAGTGGTGAAGGCGAAGGAACAGGTGGTTGCCGGCACTCTGCACCATCTGGTTGTGGAGGCCATCGACGGTGGCAAGAAGAAGCTATACGAAGCCAAGGTCTGGGTCAAGCCTTGGTTGGGATTTAAAGAGGTTCAGGAATTCAAGCACGCTGAGGATCCCGAAGCTGCATCTGAAACGCCGTCGTTTACTGCTTCCGATTTGGGCGTTAAGCAAGGTGGCATGCTCCAGGGTGGCAAGATGTGCATCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTCAAGAGCCTTCAGCAAAGGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGGTTGTCCATGCTAAGGCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP_EFTU IF-2

Protein Analysis

196

Amino Acids

21.59

Weight (kDa)

9.46

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 48 - 125 2.2e-14 Cystatin domain
SQAPI PF16845 54 - 125 1.2e-19 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 327
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 114
AclWI GGATC 3 cut(s) 377, 390, 475
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 117, 365
AcuI CTGAAG 1 cut(s) 508
AfiI CCNNNNNNNGG 3 cut(s) 327, 344, 579
AgsI TTSAA 3 cut(s) 370, 493, 562
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 3 cut(s) 310, 392, 558
AluI AGCT 3 cut(s) 310, 392, 558
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 3 cut(s) 377, 390, 475
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 2 cut(s) 102, 285
ApeKI GCWGC 2 cut(s) 392, 499
ApoI RAATTY 2 cut(s) 117, 365
ArsI GACNNNNNNTTYG 4 cut(s) 14, 46, 309, 341
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 533
BalI TGGCCA 1 cut(s) 104
BamHI GGATCC 1 cut(s) 382
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbsI GAAGAC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 379, 511
BccI CCATC 2 cut(s) 279, 296
BceAI ACGGC 2 cut(s) 164, 391
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 149
BisI GCNGC 2 cut(s) 393, 500
BlsI GCNGC 2 cut(s) 394, 501
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 533
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 139, 384
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 3 cut(s) 404, 480, 486
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 2 cut(s) 236, 437
Bpu10I CCTNAGC 2 cut(s) 378, 578
BpuEI CTTGAG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 109, 166, 321, 338, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 344, 579
Bse118I RCCGGY 2 cut(s) 134, 257
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 5 cut(s) 109, 166, 321, 338, 454
BseGI GGATG 2 cut(s) 89, 471
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 3 cut(s) 327, 344, 579
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 379, 511
BsgI GTGCAG 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 104, 287
BsiEI CGRYCG 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 135, 258
BslI CCNNNNNNNGG 3 cut(s) 327, 344, 579
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 2 cut(s) 104, 287
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 2 cut(s) 382, 480
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 104, 287
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 139, 384
BspPI GGATC 3 cut(s) 377, 390, 475
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 134, 257
BssAI RCCGGY 2 cut(s) 134, 257
BssECI CCNNGG 5 cut(s) 109, 166, 321, 338, 454
BssMI GATC 2 cut(s) 382, 480
BssT1I CCWWGG 2 cut(s) 321, 338
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 3 cut(s) 62, 71, 91
BstAPI GCANNNNNTGC 1 cut(s) 468
BstC8I GCNNGC 4 cut(s) 136, 259, 375, 449
BstDEI CTNAG 2 cut(s) 378, 578
BstF5I GGATG 2 cut(s) 89, 471
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 2 cut(s) 385, 483
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 382, 480
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 120, 468, 508
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 453
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 379, 511
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 2 cut(s) 104, 287
BtsCI GGATG 2 cut(s) 89, 471
BtuMI TCGCGA 1 cut(s) 123
Cac8I GCNNGC 4 cut(s) 136, 259, 375, 449
CciI TCATGA 1 cut(s) 477
Cfr10I RCCGGY 2 cut(s) 134, 257
Cfr13I GGNCC 1 cut(s) 533
CviAII CATG 4 cut(s) 448, 478, 508, 574
DdeI CTNAG 2 cut(s) 378, 578
DpnI GATC 2 cut(s) 384, 482
DpnII GATC 2 cut(s) 382, 480
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 62, 71, 91
EarI CTCTTC 3 cut(s) 62, 71, 91
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 321, 338
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 508
Eco88I CYCGRG 1 cut(s) 152
EcoRI GAATTC 2 cut(s) 117, 365
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 321, 338
ErhI CCWWGG 2 cut(s) 321, 338
FaeI CATG 4 cut(s) 451, 481, 511, 577
FaiI YATR 7 cut(s) 192, 313, 449, 479, 509, 554, 575
FatI CATG 4 cut(s) 447, 477, 507, 573
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 393, 500
FokI GGATG 2 cut(s) 76, 458
Fsp4HI GCNGC 2 cut(s) 393, 500
GluI GCNGC 2 cut(s) 393, 500
GsuI CTGGAG 2 cut(s) 236, 437
HaeIII GGCC 2 cut(s) 104, 287
HapII CCGG 2 cut(s) 135, 258
Hin1II CATG 4 cut(s) 451, 481, 511, 577
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 125, 161
HpaII CCGG 2 cut(s) 135, 258
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 184, 414
Hpy188I TCNGA 3 cut(s) 142, 400, 424
Hpy188III TCNNGA 8 cut(s) 122, 154, 362, 386, 478, 493, 516, 562
Hpy8I GTNNAC 2 cut(s) 184, 414
Hpy99I CGWCG 4 cut(s) 185, 188, 296, 412
HpyAV CCTTC 5 cut(s) 82, 193, 229, 235, 532
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 268, 395, 471, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 468, 508
HpyF3I CTNAG 2 cut(s) 378, 578
Hsp92II CATG 4 cut(s) 451, 481, 511, 577
KroI GCCGGC 2 cut(s) 134, 257
KroNI GCCGGC 2 cut(s) 136, 259
Kzo9I GATC 2 cut(s) 382, 480
LmnI GCTCC 2 cut(s) 143, 456
Lsp1109I GCAGC 2 cut(s) 379, 511
LweI GCATC 3 cut(s) 404, 480, 486
MalI GATC 2 cut(s) 384, 482
MboI GATC 2 cut(s) 382, 480
MboII GAAGA 6 cut(s) 24, 34, 49, 58, 78, 316
MflI RGATCY 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 117, 365, 537
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 104
MroNI GCCGGC 2 cut(s) 134, 257
MscI TGGCCA 1 cut(s) 104
MseI TTAA 2 cut(s) 351, 435
MslI CAYNNNNRTG 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 2 cut(s) 135, 258
MspR9I CCNGG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 120, 468, 508
NaeI GCCGGC 2 cut(s) 136, 259
NdeII GATC 2 cut(s) 382, 480
NgoMIV GCCGGC 2 cut(s) 134, 257
NlaIII CATG 4 cut(s) 451, 481, 511, 577
NlaIV GGNNCC 2 cut(s) 139, 384
NmeAIII GCCGAG 1 cut(s) 90
NruI TCGCGA 1 cut(s) 123
NspI RCATGY 1 cut(s) 451
PaeI GCATGC 1 cut(s) 451
PaeR7I CTCGAG 1 cut(s) 152
PagI TCATGA 1 cut(s) 477
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 183
PctI GAATGC 1 cut(s) 211
PdiI GCCGGC 2 cut(s) 136, 259
PfeI GAWTC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 2 cut(s) 394, 501
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 139, 384
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 382
RruI TCGCGA 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 476
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 351, 435
SatI GCNGC 2 cut(s) 393, 500
Sau3AI GATC 2 cut(s) 382, 480
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 455
SfaNI GCATC 3 cut(s) 404, 480, 486
Sfr274I CTCGAG 1 cut(s) 152
SgrDI CGTCGACG 1 cut(s) 182
SinI GGWCC 1 cut(s) 533
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 152, 485
SmoI CTYRAG 2 cut(s) 152, 485
SphI GCATGC 1 cut(s) 451
Sse9I AATT 3 cut(s) 117, 365, 537
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 321, 338
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 6 cut(s) 8, 20, 153, 183, 226, 291
TaqII GACCGA 2 cut(s) 158, 173
TasI AATT 3 cut(s) 117, 365, 537
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 351, 435
Tru9I TTAA 2 cut(s) 351, 435
TseI GCWGC 2 cut(s) 392, 499
TspDTI ATGAA 3 cut(s) 17, 78, 530
Van91I CCANNNNNTGG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 2 cut(s) 117, 365
XceI RCATGY 1 cut(s) 451
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.