Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 58 |
| Acc65I | GGTACC | 1 cut(s) | 1153 |
| AccB1I | GGYRCC | 1 cut(s) | 1153 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 821 |
| AciI | CCGC | 3 cut(s) | 916, 927, 1126 |
| AclI | AACGTT | 2 cut(s) | 416, 701 |
| AclWI | GGATC | 1 cut(s) | 1055 |
| AcoI | YGGCCR | 1 cut(s) | 913 |
| AcsI | RAATTY | 5 cut(s) | 251, 664, 951, 1246, 1302 |
| AfaI | GTAC | 2 cut(s) | 33, 1155 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 821 |
| AgsI | TTSAA | 7 cut(s) | 653, 697, 902, 938, 968, 1262, 1418 |
| AjnI | CCWGG | 2 cut(s) | 339, 814 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 243, 275 |
| AleI | CACNNNNGTG | 1 cut(s) | 363 |
| Alw21I | GWGCWC | 2 cut(s) | 319, 334 |
| Alw26I | GTCTC | 3 cut(s) | 169, 1242, 1247 |
| AlwI | GGATC | 1 cut(s) | 1055 |
| AoxI | GGCC | 2 cut(s) | 913, 1410 |
| ApeKI | GCWGC | 5 cut(s) | 404, 641, 1085, 1088, 1160 |
| ApoI | RAATTY | 5 cut(s) | 251, 664, 951, 1246, 1302 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 472, 504 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 624, 906 |
| Asp718I | GGTACC | 1 cut(s) | 1153 |
| AspS9I | GGNCC | 1 cut(s) | 1411 |
| AsuC2I | CCSGG | 1 cut(s) | 512 |
| AsuHPI | GGTGA | 8 cut(s) | 148, 329, 377, 629, 698, 1041, 1266, 1359 |
| AsuII | TTCGAA | 1 cut(s) | 249 |
| AsuNHI | GCTAGC | 1 cut(s) | 344 |
| BaeGI | GKGCMC | 1 cut(s) | 360 |
| BanI | GGYRCC | 1 cut(s) | 1153 |
| BanII | GRGCYC | 1 cut(s) | 334 |
| BauI | CACGAG | 1 cut(s) | 1289 |
| BbsI | GAAGAC | 3 cut(s) | 238, 385, 1137 |
| Bbv12I | GWGCWC | 2 cut(s) | 319, 334 |
| BbvI | GCAGC | 5 cut(s) | 391, 628, 1072, 1100, 1172 |
| BccI | CCATC | 3 cut(s) | 563, 801, 1324 |
| BciT130I | CCWGG | 2 cut(s) | 341, 816 |
| BciVI | GTATCC | 1 cut(s) | 598 |
| BcnI | CCSGG | 1 cut(s) | 512 |
| BcoDI | GTCTC | 3 cut(s) | 169, 1242, 1247 |
| BfaI | CTAG | 9 cut(s) | 42, 117, 305, 320, 345, 380, 659, 746, 1019 |
| BfmI | CTRYAG | 1 cut(s) | 1086 |
| BfuAI | ACCTGC | 1 cut(s) | 58 |
| BfuI | GTATCC | 1 cut(s) | 598 |
| BglII | AGATCT | 1 cut(s) | 622 |
| BisI | GCNGC | 6 cut(s) | 405, 642, 916, 1086, 1089, 1161 |
| BlsI | GCNGC | 6 cut(s) | 406, 643, 917, 1087, 1090, 1162 |
| Bme1390I | CCNGG | 3 cut(s) | 341, 512, 816 |
| BmgT120I | GGNCC | 1 cut(s) | 1411 |
| BmiI | GGNNCC | 2 cut(s) | 813, 1155 |
| BmrFI | CCNGG | 3 cut(s) | 341, 512, 816 |
| BmrI | ACTGGG | 1 cut(s) | 1367 |
| BmsI | GCATC | 2 cut(s) | 393, 1031 |
| BmtI | GCTAGC | 1 cut(s) | 348 |
| BmuI | ACTGGG | 1 cut(s) | 1367 |
| BpiI | GAAGAC | 3 cut(s) | 238, 385, 1137 |
| Bpu14I | TTCGAA | 1 cut(s) | 249 |
| BpuEI | CTTGAG | 2 cut(s) | 995, 1085 |
| BpuMI | CCSGG | 1 cut(s) | 512 |
| BsaI | GGTCTC | 2 cut(s) | 169, 1242 |
| BsaJI | CCNNGG | 3 cut(s) | 159, 789, 845 |
| BsaWI | WCCGGW | 2 cut(s) | 894, 1276 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 821 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| Bse1I | ACTGG | 4 cut(s) | 67, 600, 1373, 1382 |
| Bse3DI | GCAATG | 3 cut(s) | 222, 890, 1068 |
| BseBI | CCWGG | 2 cut(s) | 341, 816 |
| BseDI | CCNNGG | 3 cut(s) | 159, 789, 845 |
| BseGI | GGATG | 2 cut(s) | 520, 841 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 821 |
| BseMI | GCAATG | 3 cut(s) | 222, 890, 1068 |
| BseMII | CTCAG | 2 cut(s) | 270, 1194 |
| BseNI | ACTGG | 4 cut(s) | 67, 600, 1373, 1382 |
| BseSI | GKGCMC | 1 cut(s) | 360 |
| BseXI | GCAGC | 5 cut(s) | 391, 628, 1072, 1100, 1172 |
| BsgI | GTGCAG | 1 cut(s) | 1183 |
| BshFI | GGCC | 2 cut(s) | 915, 1412 |
| BshNI | GGYRCC | 1 cut(s) | 1153 |
| BsiHKAI | GWGCWC | 2 cut(s) | 319, 334 |
| BsiSI | CCGG | 4 cut(s) | 312, 511, 895, 1277 |
| BslFI | GGGAC | 2 cut(s) | 1081, 1323 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 821 |
| BsmAI | GTCTC | 3 cut(s) | 169, 1242, 1247 |
| BsmFI | GGGAC | 2 cut(s) | 1081, 1323 |
| BsnI | GGCC | 2 cut(s) | 915, 1412 |
| Bso31I | GGTCTC | 2 cut(s) | 169, 1242 |
| Bsp119I | TTCGAA | 1 cut(s) | 249 |
| Bsp1286I | GDGCHC | 3 cut(s) | 319, 334, 360 |
| Bsp143I | GATC | 3 cut(s) | 622, 1060, 1138 |
| Bsp19I | CCATGG | 1 cut(s) | 845 |
| BspACI | CCGC | 3 cut(s) | 916, 927, 1126 |
| BspANI | GGCC | 2 cut(s) | 915, 1412 |
| BspCNI | CTCAG | 2 cut(s) | 269, 1195 |
| BspLI | GGNNCC | 2 cut(s) | 813, 1155 |
| BspMAI | CTGCAG | 1 cut(s) | 1090 |
| BspMI | ACCTGC | 1 cut(s) | 58 |
| BspOI | GCTAGC | 1 cut(s) | 348 |
| BspPI | GGATC | 1 cut(s) | 1055 |
| BspT104I | TTCGAA | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 1 cut(s) | 1153 |
| BspTNI | GGTCTC | 2 cut(s) | 169, 1242 |
| BsrDI | GCAATG | 3 cut(s) | 222, 890, 1068 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BsrI | ACTGG | 4 cut(s) | 67, 600, 1373, 1382 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssECI | CCNNGG | 3 cut(s) | 159, 789, 845 |
| BssMI | GATC | 3 cut(s) | 622, 1060, 1138 |
| BssSI | CACGAG | 1 cut(s) | 1289 |
| BssT1I | CCWWGG | 3 cut(s) | 159, 789, 845 |
| Bst2BI | CACGAG | 1 cut(s) | 1289 |
| Bst2UI | CCWGG | 2 cut(s) | 341, 816 |
| Bst4CI | ACNGT | 7 cut(s) | 200, 235, 426, 1168, 1258, 1270, 1337 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1085 |
| BstBI | TTCGAA | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 2 cut(s) | 346, 1124 |
| BstDEI | CTNAG | 2 cut(s) | 256, 1203 |
| BstDSI | CCRYGG | 1 cut(s) | 845 |
| BstF5I | GGATG | 2 cut(s) | 520, 841 |
| BstKTI | GATC | 3 cut(s) | 625, 1063, 1141 |
| BstMAI | GTCTC | 3 cut(s) | 169, 1242, 1247 |
| BstMBI | GATC | 3 cut(s) | 622, 1060, 1138 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 221, 800, 1013, 1085, 1169 |
| BstNI | CCWGG | 2 cut(s) | 341, 816 |
| BstNSI | RCATGY | 1 cut(s) | 579 |
| BstSCI | CCNGG | 3 cut(s) | 339, 510, 814 |
| BstSFI | CTRYAG | 1 cut(s) | 1086 |
| BstSLI | GKGCMC | 1 cut(s) | 360 |
| BstV1I | GCAGC | 5 cut(s) | 391, 628, 1072, 1100, 1172 |
| BstV2I | GAAGAC | 3 cut(s) | 238, 385, 1137 |
| BstX2I | RGATCY | 1 cut(s) | 622 |
| BstYI | RGATCY | 1 cut(s) | 622 |
| BsuI | GTATCC | 1 cut(s) | 598 |
| BsuRI | GGCC | 2 cut(s) | 915, 1412 |
| BtgI | CCRYGG | 1 cut(s) | 845 |
| BtsCI | GGATG | 2 cut(s) | 520, 841 |
| BtsIMutI | CAGTG | 2 cut(s) | 1200, 1266 |
| BveI | ACCTGC | 1 cut(s) | 58 |
| Cac8I | GCNNGC | 2 cut(s) | 346, 1124 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 1 cut(s) | 1411 |
| CseI | GACGC | 1 cut(s) | 859 |
| Csp6I | GTAC | 2 cut(s) | 32, 1154 |
| CviAII | CATG | 6 cut(s) | 576, 821, 846, 911, 975, 1343 |
| CviQI | GTAC | 2 cut(s) | 32, 1154 |
| DdeI | CTNAG | 2 cut(s) | 256, 1203 |
| DpnI | GATC | 3 cut(s) | 624, 1062, 1140 |
| DpnII | GATC | 3 cut(s) | 622, 1060, 1138 |
| DraI | TTTAAA | 1 cut(s) | 285 |
| EaeI | YGGCCR | 1 cut(s) | 913 |
| Ecl136II | GAGCTC | 1 cut(s) | 332 |
| Eco130I | CCWWGG | 3 cut(s) | 159, 789, 845 |
| Eco24I | GRGCYC | 1 cut(s) | 334 |
| Eco31I | GGTCTC | 2 cut(s) | 169, 1242 |
| Eco32I | GATATC | 2 cut(s) | 495, 549 |
| Eco53kI | GAGCTC | 1 cut(s) | 332 |
| EcoICRI | GAGCTC | 1 cut(s) | 332 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1411 |
| EcoRI | GAATTC | 1 cut(s) | 251 |
| EcoRII | CCWGG | 2 cut(s) | 339, 814 |
| EcoRV | GATATC | 2 cut(s) | 495, 549 |
| EcoT14I | CCWWGG | 3 cut(s) | 159, 789, 845 |
| EcoT38I | GRGCYC | 1 cut(s) | 334 |
| ErhI | CCWWGG | 3 cut(s) | 159, 789, 845 |
| FaeI | CATG | 6 cut(s) | 579, 824, 849, 914, 978, 1346 |
| FaqI | GGGAC | 2 cut(s) | 1081, 1323 |
| FatI | CATG | 6 cut(s) | 575, 820, 845, 910, 974, 1342 |
| FauI | CCCGC | 1 cut(s) | 1119 |
| Fnu4HI | GCNGC | 6 cut(s) | 405, 642, 916, 1086, 1089, 1161 |
| FokI | GGATG | 2 cut(s) | 527, 828 |
| FriOI | GRGCYC | 1 cut(s) | 334 |
| Fsp4HI | GCNGC | 6 cut(s) | 405, 642, 916, 1086, 1089, 1161 |
| FspBI | CTAG | 9 cut(s) | 42, 117, 305, 320, 345, 380, 659, 746, 1019 |
| GluI | GCNGC | 6 cut(s) | 405, 642, 916, 1086, 1089, 1161 |
| HaeIII | GGCC | 2 cut(s) | 915, 1412 |
| HapII | CCGG | 4 cut(s) | 312, 511, 895, 1277 |
| HgaI | GACGC | 1 cut(s) | 859 |
| Hin1II | CATG | 6 cut(s) | 579, 824, 849, 914, 978, 1346 |
| HincII | GTYRAC | 3 cut(s) | 60, 1195, 1406 |
| HindII | GTYRAC | 3 cut(s) | 60, 1195, 1406 |
| HindIII | AAGCTT | 1 cut(s) | 98 |
| HinfI | GANTC | 7 cut(s) | 719, 785, 971, 995, 1217, 1364, 1402 |
| HpaII | CCGG | 4 cut(s) | 312, 511, 895, 1277 |
| HphI | GGTGA | 8 cut(s) | 148, 329, 377, 629, 698, 1041, 1266, 1359 |
| Hpy166II | GTNNAC | 5 cut(s) | 47, 60, 368, 1195, 1406 |
| Hpy188I | TCNGA | 3 cut(s) | 869, 1027, 1326 |
| Hpy188III | TCNNGA | 2 cut(s) | 433, 1033 |
| Hpy8I | GTNNAC | 5 cut(s) | 47, 60, 368, 1195, 1406 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyAV | CCTTC | 1 cut(s) | 668 |
| HpyCH4III | ACNGT | 7 cut(s) | 200, 235, 426, 1168, 1258, 1270, 1337 |
| HpyCH4IV | ACGT | 3 cut(s) | 416, 701, 933 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 221, 800, 1013, 1085, 1169 |
| HpyF3I | CTNAG | 2 cut(s) | 256, 1203 |
| HpySE526I | ACGT | 3 cut(s) | 416, 701, 933 |
| Hsp92II | CATG | 6 cut(s) | 579, 824, 849, 914, 978, 1346 |
| KpnI | GGTACC | 1 cut(s) | 1157 |
| Kzo9I | GATC | 3 cut(s) | 622, 1060, 1138 |
| LmnI | GCTCC | 5 cut(s) | 263, 329, 811, 869, 893 |
| Lsp1109I | GCAGC | 5 cut(s) | 391, 628, 1072, 1100, 1172 |
| LweI | GCATC | 2 cut(s) | 393, 1031 |
| MaeI | CTAG | 9 cut(s) | 42, 117, 305, 320, 345, 380, 659, 746, 1019 |
| MaeII | ACGT | 3 cut(s) | 416, 701, 933 |
| MaeIII | GTNAC | 4 cut(s) | 229, 956, 1272, 1365 |
| MalI | GATC | 3 cut(s) | 624, 1062, 1140 |
| MboI | GATC | 3 cut(s) | 622, 1060, 1138 |
| MflI | RGATCY | 1 cut(s) | 622 |
| MhlI | GDGCHC | 3 cut(s) | 319, 334, 360 |
| MlyI | GAGTC | 4 cut(s) | 728, 1226, 1373, 1411 |
| MmeI | TCCRAC | 4 cut(s) | 241, 507, 684, 847 |
| MnlI | CCTC | 7 cut(s) | 284, 514, 644, 700, 1063, 1109, 1183 |
| MroXI | GAANNNNTTC | 2 cut(s) | 624, 906 |
| MseI | TTAA | 6 cut(s) | 138, 284, 441, 861, 875, 1113 |
| MslI | CAYNNNNRTG | 1 cut(s) | 363 |
| MspA1I | CMGCKG | 1 cut(s) | 929 |
| MspI | CCGG | 4 cut(s) | 312, 511, 895, 1277 |
| MspR9I | CCNGG | 3 cut(s) | 341, 512, 816 |
| MvaI | CCWGG | 2 cut(s) | 341, 816 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 221, 800, 1013, 1085, 1169 |
| NciI | CCSGG | 1 cut(s) | 512 |
| NcoI | CCATGG | 1 cut(s) | 845 |
| NdeII | GATC | 3 cut(s) | 622, 1060, 1138 |
| NheI | GCTAGC | 1 cut(s) | 344 |
| NlaIII | CATG | 6 cut(s) | 579, 824, 849, 914, 978, 1346 |
| NlaIV | GGNNCC | 2 cut(s) | 813, 1155 |
| NmuCI | GTSAC | 3 cut(s) | 229, 1272, 1365 |
| NspI | RCATGY | 1 cut(s) | 579 |
| NspV | TTCGAA | 1 cut(s) | 249 |
| OliI | CACNNNNGTG | 1 cut(s) | 363 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 246 |
| PdmI | GAANNNNTTC | 2 cut(s) | 624, 906 |
| PfeI | GAWTC | 3 cut(s) | 785, 971, 995 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 821 |
| PfoI | TCCNGGA | 1 cut(s) | 510 |
| PkrI | GCNGC | 6 cut(s) | 406, 643, 917, 1087, 1090, 1162 |
| PleI | GAGTC | 4 cut(s) | 727, 1225, 1372, 1410 |
| PpsI | GAGTC | 4 cut(s) | 727, 1225, 1372, 1410 |
| Psp124BI | GAGCTC | 1 cut(s) | 334 |
| Psp1406I | AACGTT | 2 cut(s) | 416, 701 |
| Psp6I | CCWGG | 2 cut(s) | 339, 814 |
| PspGI | CCWGG | 2 cut(s) | 339, 814 |
| PspN4I | GGNNCC | 2 cut(s) | 813, 1155 |
| PspPI | GGNCC | 1 cut(s) | 1411 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 360, 392 |
| PstI | CTGCAG | 1 cut(s) | 1090 |
| PsuI | RGATCY | 1 cut(s) | 622 |
| RsaI | GTAC | 2 cut(s) | 33, 1155 |
| RsaNI | GTAC | 2 cut(s) | 32, 1154 |
| RseI | CAYNNNNRTG | 1 cut(s) | 363 |
| SacI | GAGCTC | 1 cut(s) | 334 |
| SaqAI | TTAA | 6 cut(s) | 138, 284, 441, 861, 875, 1113 |
| SatI | GCNGC | 6 cut(s) | 405, 642, 916, 1086, 1089, 1161 |
| Sau3AI | GATC | 3 cut(s) | 622, 1060, 1138 |
| Sau96I | GGNCC | 1 cut(s) | 1411 |
| SchI | GAGTC | 4 cut(s) | 728, 1226, 1373, 1411 |
| ScrFI | CCNGG | 3 cut(s) | 341, 512, 816 |
| SduI | GDGCHC | 3 cut(s) | 319, 334, 360 |
| SfaNI | GCATC | 2 cut(s) | 393, 1031 |
| SfcI | CTRYAG | 1 cut(s) | 1086 |
| SfuI | TTCGAA | 1 cut(s) | 249 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 2 cut(s) | 1010, 1100 |
| SmoI | CTYRAG | 2 cut(s) | 1010, 1100 |
| SsiI | CCGC | 3 cut(s) | 916, 927, 1126 |
| SspI | AATATT | 1 cut(s) | 1390 |
| SspMI | CTAG | 9 cut(s) | 42, 117, 305, 320, 345, 380, 659, 746, 1019 |
| SstI | GAGCTC | 1 cut(s) | 334 |
| StyD4I | CCNGG | 3 cut(s) | 339, 510, 814 |
| StyI | CCWWGG | 3 cut(s) | 159, 789, 845 |
| TaaI | ACNGT | 7 cut(s) | 200, 235, 426, 1168, 1258, 1270, 1337 |
| TaiI | ACGT | 3 cut(s) | 419, 704, 936 |
| TaqI | TCGA | 2 cut(s) | 249, 1215 |
| TauI | GCSGC | 1 cut(s) | 918 |
| TfiI | GAWTC | 3 cut(s) | 785, 971, 995 |
| Tru1I | TTAA | 6 cut(s) | 138, 284, 441, 861, 875, 1113 |
| Tru9I | TTAA | 6 cut(s) | 138, 284, 441, 861, 875, 1113 |
| TscAI | CASTG | 2 cut(s) | 1207, 1273 |
| TseFI | GTSAC | 3 cut(s) | 229, 1272, 1365 |
| TseI | GCWGC | 5 cut(s) | 404, 641, 1085, 1088, 1160 |
| Tsp45I | GTSAC | 3 cut(s) | 229, 1272, 1365 |
| TspDTI | ATGAA | 5 cut(s) | 409, 550, 617, 899, 1242 |
| TspGWI | ACGGA | 1 cut(s) | 1376 |
| TspRI | CASTG | 2 cut(s) | 1207, 1273 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 821 |
| XapI | RAATTY | 5 cut(s) | 251, 664, 951, 1246, 1302 |
| XceI | RCATGY | 1 cut(s) | 579 |
| XmnI | GAANNNNTTC | 2 cut(s) | 624, 906 |
| XspI | CTAG | 9 cut(s) | 42, 117, 305, 320, 345, 380, 659, 746, 1019 |