Rorug04G0419800
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000231
Physical Location & Seq
Reverse (-)
58035158 .. 58038671
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0419800.1

Sequence Viewer

Length: 819 bp
ATGATAACAGTGCCAAACTTGAACTTGGAATTTGAGAGTGATAATTTAGAAGTCACAAGCCAAGTAACTTCCAACAACATAGCTCAGCAAGACGAAACCCCTGATCCCTCCAAGGACAGCACTACTTCTTCCTGTATCACAAATCAGACAAACCTTGAACAAAATCCTGGGCCTATGTTCCTTGACTTATCACTCCAATTTAGCTCCAATGACCTCGAATTGAAGGGCATGGCAGGGGAGACTAACAGTGAAATAGAAGCAGCGCCTGATTCAGAAGCAGCAATTCCAAGGGTATTCTCGTGCAACTACTGTAAGCGCAAGTTCTTTAGCTCTCAAGCATTGGGCGGACATCAGAATGCTCATAAGAGGGAGAGGACAATGGCAAAGCGTGCATTGCGGATGGGAATGTTTCCTGATCACAGGTATACTAGCTTGGCATCTCTTCCCCTACACGGTTCTTCTGCTTCTGCCTTCCGGTCTCTTGGGATCGAAGCTCACGCTGCAATGCACCAAAACATGTTGATACAGCCAGACCAGAGGCTACCTGTTCCTGACACAAGAGGTGTAGCAAGGTTTCAGCAGCAAGGCTACTATGGAGTGCCGATGCCGATGCCGCCAATGCCAATGTTCATGGAAGATGATGATGTGGGTATGTTTTGGCCCGGGAGCTTTCGACAGGTGGGTGAGGGAATCCGAGGTCATTTCAATGTGGATCAATATGCCCAAAATTCACGAATGATCAATTCAGGAAGGACCATGCCACCAAAAAGTAGTACAAGTTCATCATCTTCTTCACCTGATCTTACTTTAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

272

Amino Acids

30.07

Weight (kDa)

5.64

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 425
AciI CCGC 3 cut(s) 345, 397, 614
AclWI GGATC 3 cut(s) 98, 494, 720
AcsI RAATTY 2 cut(s) 29, 727
AfaI GTAC 1 cut(s) 775
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 4 cut(s) 22, 158, 223, 706
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 7 cut(s) 83, 204, 330, 432, 494, 669, 814
AluI AGCT 7 cut(s) 83, 204, 330, 432, 494, 669, 814
Alw26I GTCTC 2 cut(s) 233, 483
AlwI GGATC 3 cut(s) 98, 494, 720
AlwNI CAGNNNCTG 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 2 cut(s) 170, 659
ApeKI GCWGC 4 cut(s) 260, 278, 500, 580
ApoI RAATTY 2 cut(s) 29, 727
AspLEI GCGC 2 cut(s) 265, 318
AspS9I GGNCC 3 cut(s) 170, 660, 753
AsuC2I CCSGG 2 cut(s) 663, 664
AsuHPI GGTGA 2 cut(s) 695, 786
AvaI CYCGRG 1 cut(s) 662
AvaII GGWCC 1 cut(s) 753
BauI CACGAG 1 cut(s) 298
BbvI GCAGC 4 cut(s) 272, 290, 487, 592
BccI CCATC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 2 cut(s) 415, 738
BcnI CCSGG 2 cut(s) 663, 664
BcoDI GTCTC 2 cut(s) 233, 483
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 5 cut(s) 261, 279, 501, 581, 614
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 5 cut(s) 262, 280, 502, 582, 615
Bme1390I CCNGG 3 cut(s) 168, 663, 664
Bme18I GGWCC 1 cut(s) 753
BmeT110I CYCGRG 1 cut(s) 662
BmgT120I GGNCC 3 cut(s) 170, 660, 753
BmrFI CCNGG 3 cut(s) 168, 663, 664
BmsI GCATC 3 cut(s) 446, 594, 600
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 318
BpuMI CCSGG 2 cut(s) 663, 664
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 5 cut(s) 111, 167, 287, 662, 694
BsaWI WCCGGW 1 cut(s) 474
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse3DI GCAATG 2 cut(s) 392, 510
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 5 cut(s) 111, 167, 287, 662, 694
BseGI GGATG 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 2 cut(s) 392, 510
BseMII CTCAG 1 cut(s) 98
BseXI GCAGC 4 cut(s) 272, 290, 487, 592
BshFI GGCC 2 cut(s) 172, 661
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 2 cut(s) 475, 663
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 233, 483
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 2 cut(s) 172, 661
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 662
Bsp143I GATC 6 cut(s) 103, 415, 486, 712, 738, 799
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 3 cut(s) 345, 397, 614
BspANI GGCC 2 cut(s) 172, 661
BspCNI CTCAG 1 cut(s) 97
BspPI GGATC 3 cut(s) 98, 494, 720
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 2 cut(s) 392, 510
BssECI CCNNGG 5 cut(s) 111, 167, 287, 662, 694
BssMI GATC 6 cut(s) 103, 415, 486, 712, 738, 799
BssNAI GTATAC 1 cut(s) 426
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 111, 287
Bst1107I GTATAC 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 4 cut(s) 10, 248, 311, 455
Bst6I CTCTTC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 405
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 318
BstKTI GATC 6 cut(s) 106, 418, 489, 715, 741, 802
BstMAI GTCTC 2 cut(s) 233, 483
BstMBI GATC 6 cut(s) 103, 415, 486, 712, 738, 799
BstMWI GCNNNNNNNGC 5 cut(s) 389, 394, 500, 613, 619
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 166, 661, 662
BstV1I GCAGC 4 cut(s) 272, 290, 487, 592
BstZ17I GTATAC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 172, 661
BtsCI GGATG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 15, 253
Cac8I GCNNGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 2 cut(s) 265, 318
Cfr13I GGNCC 3 cut(s) 170, 660, 753
Cfr9I CCCGGG 1 cut(s) 662
Csp6I GTAC 1 cut(s) 774
CviAII CATG 4 cut(s) 229, 517, 631, 757
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 1 cut(s) 84
DpnI GATC 6 cut(s) 105, 417, 488, 714, 740, 801
DpnII GATC 6 cut(s) 103, 415, 486, 712, 738, 799
DraI TTTAAA 1 cut(s) 810
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 111, 287
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 662
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 111, 287
ErhI CCWWGG 2 cut(s) 111, 287
FaeI CATG 4 cut(s) 232, 520, 634, 760
FatI CATG 4 cut(s) 228, 516, 630, 756
FbaI TGATCA 2 cut(s) 415, 738
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 5 cut(s) 261, 279, 501, 581, 614
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 5 cut(s) 261, 279, 501, 581, 614
FspBI CTAG 1 cut(s) 429
GlaI GCGC 2 cut(s) 264, 317
GluI GCNGC 5 cut(s) 261, 279, 501, 581, 614
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 2 cut(s) 172, 661
HapII CCGG 2 cut(s) 475, 663
HhaI GCGC 2 cut(s) 265, 318
Hin1II CATG 4 cut(s) 232, 520, 634, 760
Hin6I GCGC 2 cut(s) 263, 316
HinP1I GCGC 2 cut(s) 263, 316
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 2 cut(s) 269, 690
HpaII CCGG 2 cut(s) 475, 663
HphI GGTGA 2 cut(s) 695, 786
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 4 cut(s) 147, 274, 354, 695
Hpy188III TCNNGA 4 cut(s) 413, 551, 732, 747
Hpy8I GTNNAC 1 cut(s) 426
HpyAV CCTTC 3 cut(s) 217, 481, 744
HpyCH4III ACNGT 4 cut(s) 10, 248, 311, 455
HpyCH4V TGCA 4 cut(s) 303, 392, 503, 508
HpyF10VI GCNNNNNNNGC 5 cut(s) 389, 394, 500, 613, 619
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 4 cut(s) 232, 520, 634, 760
HspAI GCGC 2 cut(s) 263, 316
Ksp22I TGATCA 2 cut(s) 415, 738
Kzo9I GATC 6 cut(s) 103, 415, 486, 712, 738, 799
LmnI GCTCC 2 cut(s) 209, 666
Lsp1109I GCAGC 4 cut(s) 272, 290, 487, 592
LweI GCATC 3 cut(s) 446, 594, 600
MaeI CTAG 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 52, 64
MalI GATC 6 cut(s) 105, 417, 488, 714, 740, 801
MboI GATC 6 cut(s) 103, 415, 486, 712, 738, 799
MboII GAAGA 6 cut(s) 120, 434, 450, 647, 780, 783
MluCI AATT 7 cut(s) 29, 43, 197, 218, 282, 727, 742
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 8 cut(s) 118, 224, 360, 366, 531, 554, 679, 689
MseI TTAA 1 cut(s) 809
MslI CAYNNNNRTG 2 cut(s) 354, 705
MspI CCGG 2 cut(s) 475, 663
MspR9I CCNGG 3 cut(s) 168, 663, 664
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 389, 394, 500, 613, 619
NciI CCSGG 2 cut(s) 663, 664
NdeII GATC 6 cut(s) 103, 415, 486, 712, 738, 799
NlaIII CATG 4 cut(s) 232, 520, 634, 760
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 1 cut(s) 520
PciI ACATGT 1 cut(s) 516
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 269, 690
PkrI GCNGC 5 cut(s) 262, 280, 502, 582, 615
PscI ACATGT 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 3 cut(s) 170, 660, 753
PsrI GAACNNNNNNTAC 2 cut(s) 763, 795
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
RseI CAYNNNNRTG 2 cut(s) 354, 705
SaqAI TTAA 1 cut(s) 809
SatI GCNGC 5 cut(s) 261, 279, 501, 581, 614
Sau3AI GATC 6 cut(s) 103, 415, 486, 712, 738, 799
Sau96I GGNCC 3 cut(s) 170, 660, 753
ScrFI CCNGG 3 cut(s) 168, 663, 664
SfaNI GCATC 3 cut(s) 446, 594, 600
SinI GGWCC 1 cut(s) 753
SmaI CCCGGG 1 cut(s) 664
SmiMI CAYNNNNRTG 2 cut(s) 354, 705
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 7 cut(s) 29, 43, 197, 218, 282, 727, 742
SsiI CCGC 3 cut(s) 345, 397, 614
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 3 cut(s) 166, 661, 662
StyI CCWWGG 2 cut(s) 111, 287
TaaI ACNGT 4 cut(s) 10, 248, 311, 455
TaqI TCGA 3 cut(s) 216, 489, 673
TasI AATT 7 cut(s) 29, 43, 197, 218, 282, 727, 742
TatI WGTACW 1 cut(s) 773
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 2 cut(s) 269, 690
Tru1I TTAA 1 cut(s) 809
Tru9I TTAA 1 cut(s) 809
TscAI CASTG 2 cut(s) 15, 253
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 4 cut(s) 260, 278, 500, 580
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 619, 771
TspMI CCCGGG 1 cut(s) 662
TspRI CASTG 2 cut(s) 15, 253
VpaK11BI GGWCC 1 cut(s) 753
XapI RAATTY 2 cut(s) 29, 727
XceI RCATGY 1 cut(s) 520
XmaI CCCGGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.