Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

80296277 .. 80297101

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAACCACGAACTTTGCAACTAATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTACAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAATGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGGTCCATTGATCTGAACTTTGGTTCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTTACGTGTCGGCTATGGTGTTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

5.04

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	1.2e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	3 cut(s)	107, 564, 573
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	5 cut(s)	313, 321, 334, 396, 457
AcsI	RAATTY	2 cut(s)	281, 415
AfaI	GTAC	2 cut(s)	158, 394
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	427
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	179, 277, 491
AhlI	ACTAGT	2 cut(s)	332, 389
AjnI	CCWGG	1 cut(s)	480
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	1 cut(s)	598
AluI	AGCT	1 cut(s)	598
Alw21I	GWGCWC	1 cut(s)	600
AlwI	GGATC	5 cut(s)	313, 321, 334, 396, 457
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	281, 415
AsiGI	ACCGGT	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	230, 495
AspS9I	GGNCC	2 cut(s)	130, 354
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	470, 530
AvaII	GGWCC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	100, 600
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	2 cut(s)	223, 548
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	3 cut(s)	50, 341, 440
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	79
BcuI	ACTAGT	2 cut(s)	332, 389
BfaI	CTAG	2 cut(s)	333, 390
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	79, 482
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	130, 354
BmiI	GGNNCC	5 cut(s)	6, 99, 242, 328, 376
BmrFI	CCNGG	2 cut(s)	79, 482
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	2 cut(s)	223, 548
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	3 cut(s)	110, 236, 614
BpuMI	CCSGG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	78, 91
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	100, 600
Bsp1720I	GCTNAGC	1 cut(s)	599
BspACI	CCGC	3 cut(s)	107, 564, 573
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	612
BspDI	ATCGAT	1 cut(s)	452
BspLI	GGNNCC	5 cut(s)	6, 99, 242, 328, 376
BspPI	GGATC	5 cut(s)	313, 321, 334, 396, 457
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	552
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	116, 599, 633
BstF5I	GGATG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	570, 629
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	77, 480
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	223, 548
BstX2I	RGATCY	4 cut(s)	183, 305, 326, 401
BstYI	RGATCY	4 cut(s)	183, 305, 326, 401
Bsu15I	ATCGAT	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	452
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	130, 354
ClaI	ATCGAT	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	157, 393
CspAI	ACCGGT	1 cut(s)	90
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	5 cut(s)	457, 511, 515, 538, 628
CviJI	RGCY	9 cut(s)	77, 98, 132, 257, 435, 579, 598, 603, 632
CviKI_1	RGCY	9 cut(s)	77, 98, 132, 257, 435, 579, 598, 603, 632
CviQI	GTAC	2 cut(s)	157, 393
DdeI	CTNAG	3 cut(s)	116, 599, 633
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	100, 600
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	100, 600
FaeI	CATG	5 cut(s)	460, 514, 518, 541, 631
FaiI	YATR	9 cut(s)	141, 207, 438, 458, 512, 516, 539, 570, 629
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	5 cut(s)	456, 510, 514, 537, 627
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	100, 600
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	333, 390
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	78, 91
Hin1II	CATG	5 cut(s)	460, 514, 518, 541, 631
HinfI	GANTC	2 cut(s)	120, 175
HpaII	CCGG	2 cut(s)	78, 91
HphI	GGTGA	2 cut(s)	470, 530
Hpy188I	TCNGA	4 cut(s)	198, 288, 366, 553
Hpy188III	TCNNGA	4 cut(s)	179, 244, 260, 311
HpyAV	CCTTC	3 cut(s)	200, 271, 506
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	2 cut(s)	291, 427
HpyCH4V	TGCA	3 cut(s)	19, 514, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	570, 629
HpyF3I	CTNAG	3 cut(s)	116, 599, 633
HpySE526I	ACGT	2 cut(s)	291, 427
Hsp92II	CATG	5 cut(s)	460, 514, 518, 541, 631
LmnI	GCTCC	2 cut(s)	28, 103
LpnPI	CCDG	7 cut(s)	53, 91, 104, 257, 366, 467, 494
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	2 cut(s)	333, 390
MaeII	ACGT	2 cut(s)	291, 427
MaeIII	GTNAC	1 cut(s)	423
MboII	GAAGA	2 cut(s)	223, 553
MflI	RGATCY	4 cut(s)	183, 305, 326, 401
MhlI	GDGCHC	2 cut(s)	100, 600
MluCI	AATT	3 cut(s)	281, 319, 415
Mph1103I	ATGCAT	1 cut(s)	516
MroXI	GAANNNNTTC	2 cut(s)	230, 495
MseI	TTAA	1 cut(s)	153
MspI	CCGG	2 cut(s)	78, 91
MspR9I	CCNGG	2 cut(s)	79, 482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	570, 629
NciI	CCSGG	1 cut(s)	79
NlaIII	CATG	5 cut(s)	460, 514, 518, 541, 631
NlaIV	GGNNCC	5 cut(s)	6, 99, 242, 328, 376
NsiI	ATGCAT	1 cut(s)	516
PdmI	GAANNNNTTC	2 cut(s)	230, 495
PfeI	GAWTC	2 cut(s)	120, 175
PinAI	ACCGGT	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	5 cut(s)	6, 99, 242, 328, 376
PspPI	GGNCC	2 cut(s)	130, 354
PsuI	RGATCY	4 cut(s)	183, 305, 326, 401
RsaI	GTAC	2 cut(s)	158, 394
RsaNI	GTAC	2 cut(s)	157, 393
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	130, 354
ScaI	AGTACT	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	79, 482
SduI	GDGCHC	2 cut(s)	100, 600
SetI	ASST	6 cut(s)	252, 294, 356, 430, 562, 600
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	354
SmlI	CTYRAG	3 cut(s)	125, 251, 593
SmoI	CTYRAG	3 cut(s)	125, 251, 593
SpeI	ACTAGT	2 cut(s)	332, 389
Sse9I	AATT	3 cut(s)	281, 319, 415
SsiI	CCGC	3 cut(s)	107, 564, 573
SspMI	CTAG	2 cut(s)	333, 390
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	77, 480
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	2 cut(s)	294, 430
TaqI	TCGA	4 cut(s)	51, 216, 312, 452
TasI	AATT	3 cut(s)	281, 319, 415
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	120, 175
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	182, 554
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	354
XapI	RAATTY	2 cut(s)	281, 415
XmnI	GAANNNNTTC	2 cut(s)	230, 495
XspI	CTAG	2 cut(s)	333, 390
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.