Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

22589452 .. 22589904

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGGCCGACTAATAACCGGTGGGCTCCTACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAAGCTCGAGAGAGGCAGCTGATGAGGCCAATTCGGAAAGTTCGGGTCGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGCTCCACTGATGATGGTAGGTCCATTGACCTAAACTTTGGTTCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTCACGTGTCGGCTATGGTGTTGATGGATCGATCATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

150

Amino Acids

16.82

Weight (kDa)

8.79

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 86	1.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	5 cut(s)	301, 309, 322, 384, 445
AcsI	RAATTY	1 cut(s)	403
AcvI	CACGTG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	415
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	377
AluBI	AGCT	3 cut(s)	245, 259, 324
AluI	AGCT	3 cut(s)	245, 259, 324
AlwI	GGATC	5 cut(s)	301, 309, 322, 384, 445
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	3 cut(s)	80, 133, 266
ApeKI	GCWGC	2 cut(s)	50, 256
ApoI	RAATTY	1 cut(s)	403
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	133, 342
AsuC2I	CCSGG	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	103
BbrPI	CACGTG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	62, 268
BccI	CCATC	3 cut(s)	26, 329, 428
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	321, 378
BglI	GCCNNNNNGGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	2 cut(s)	51, 257
BlsI	GCNGC	2 cut(s)	52, 258
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	133, 342
BmiI	GGNNCC	4 cut(s)	102, 230, 316, 364
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	440
BseGI	GGATG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	62, 268
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	3 cut(s)	82, 135, 268
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	54, 94
BsnI	GGCC	3 cut(s)	82, 135, 268
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	82, 135, 268
BspDI	ATCGAT	1 cut(s)	440
BspLI	GGNNCC	4 cut(s)	102, 230, 316, 364
BspPI	GGATC	5 cut(s)	301, 309, 322, 384, 445
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
Bst4CI	ACNGT	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	9 cut(s)	174, 204, 296, 304, 317, 392, 400, 440, 444
BstMBI	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 265
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	62, 268
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	4 cut(s)	171, 293, 314, 389
BstYI	RGATCY	4 cut(s)	171, 293, 314, 389
Bsu15I	ATCGAT	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	82, 135, 268
BsuTUI	ATCGAT	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	327, 366
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	133, 342
ClaI	ATCGAT	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	381
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	9 cut(s)	53, 82, 101, 135, 245, 259, 268, 324, 423
CviKI_1	RGCY	9 cut(s)	53, 82, 101, 135, 245, 259, 268, 324, 423
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	9 cut(s)	173, 203, 295, 303, 316, 391, 399, 439, 443
DpnII	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	342
Eco72I	CACGTG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	1 cut(s)	448
FaiI	YATR	4 cut(s)	144, 195, 426, 446
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	51, 257
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	51, 257
FspBI	CTAG	2 cut(s)	321, 378
GluI	GCNGC	2 cut(s)	51, 257
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	3 cut(s)	82, 135, 268
HapII	CCGG	2 cut(s)	54, 94
Hin1II	CATG	1 cut(s)	448
HinfI	GANTC	2 cut(s)	123, 163
HpaII	CCGG	2 cut(s)	54, 94
Hpy188I	TCNGA	2 cut(s)	186, 276
Hpy188III	TCNNGA	4 cut(s)	167, 232, 248, 299
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	2 cut(s)	216, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 265
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	2 cut(s)	216, 415
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
LmnI	GCTCC	3 cut(s)	4, 106, 329
LpnPI	CCDG	6 cut(s)	29, 64, 67, 107, 245, 354
Lsp1109I	GCAGC	2 cut(s)	62, 268
MaeI	CTAG	2 cut(s)	321, 378
MaeII	ACGT	2 cut(s)	216, 415
MaeIII	GTNAC	1 cut(s)	411
MalI	GATC	9 cut(s)	173, 203, 295, 303, 316, 391, 399, 439, 443
MboI	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	4 cut(s)	171, 293, 314, 389
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	270, 307, 403
MnlI	CCTC	8 cut(s)	22, 29, 123, 137, 199, 246, 248, 258
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	2 cut(s)	54, 94
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	79, 265
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	4 cut(s)	102, 230, 316, 364
NmuCI	GTSAC	1 cut(s)	411
PaeR7I	CTCGAG	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	123, 163
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	52, 258
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
PspCI	CACGTG	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	102, 230, 316, 364
PspPI	GGNCC	2 cut(s)	133, 342
PsuI	RGATCY	4 cut(s)	171, 293, 314, 389
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	51, 257
Sau3AI	GATC	9 cut(s)	171, 201, 293, 301, 314, 389, 397, 437, 441
Sau96I	GGNCC	2 cut(s)	133, 342
ScaI	AGTACT	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	8 cut(s)	219, 240, 247, 261, 326, 344, 354, 418
Sfr274I	CTCGAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	128, 246
SmoI	CTYRAG	2 cut(s)	128, 246
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	3 cut(s)	270, 307, 403
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	321, 378
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	2 cut(s)	219, 418
TaqI	TCGA	5 cut(s)	27, 204, 247, 300, 440
TasI	AATT	3 cut(s)	270, 307, 403
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	123, 163
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	334, 373
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	2 cut(s)	50, 256
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	334, 373
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	321, 378
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.