Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

25810039 .. 25811136

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTTATAAAACTATACGAAGGGCCCCAAATTGATCAGGGCCCCAAAGTGCCACCGGAGATCAAAACAGAGGTGATAGCATGGATAAAGAGAAAAGATTCTATTAAGCAAGAAAAGGCAGCTGTTCAAGATGATATTAGAGAAGAACTCCGCAATGATTATCTTGGAAATCAAACAAGTCTGTATAATGACGATGACGACAATGATGATGATGATGATGGATTTCAGTATCCACCAGACATGCACCCTGCAAAACGACAAGATTATCGTGCTGTAGTAAGACGATCAACCGTAGATCGTGATAAGAACTCTCAGTTTAGTAGAAGTGCAAGATTTCAATTTCCAAAACAATCGAGAGGCGGTAGTAGCAGTCAACAACTGCAACAAGTTGATCGATCAAAAACCTATCGGTACTCATTTCCTGAGCCTCCAGTAGCAATGCCATCAAAAGATAGTCAATCAAAACAAAGCACAATTAAATCATTACTAAAAGGTGGTAGAGAACTATTGGCAACAATGGTGTCCAAATACCACATATATGATGCTGGCCCTTTTAACAAAGCTGATTCTCCACATTTCCAAAACATGTTGACTACAGCTGGAAGCGGAACAGGTGGTGGAGGTGAAAGATATGAATATGGACAATCTTCTGTGGATGGAGGATTCCAATTTACCTGTGAAGGTAATTTTGATCATGCCACCCAAGATGAAGACCACGGAGTGAGAACAGCTGGTCATGGTGCTCAAGAGAAGACCCGATATGGGAGGAGGACTAGAGGTGCAACTGATGATCAAAGTACCCCATCTGATGTTTCTTCAATTGCCTTAAGTTTTGACCCTATCAGTTTAGGCACAGAGCGCAGTGGGATCTCAAATGAATCTCATGAAGGCAACAATCAATTTGGTTATGATGCTTATGGATATAATCAATATGGAGAAGTATATGATCAGTCATCTAGTTGGGTTCATCCTTATTATCCCCTTATAGGGGAAACAGTCGGCAGCTCTAAAGAGATCTATAATTATCATGTTCATCACTACAATTCGCACTATATGGGTCATATGTCTTGGTCTGATTATTGCATTTTCATAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

365

Amino Acids

41.27

Weight (kDa)

5.46

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	8
AciI	CCGC	3 cut(s)	151, 360, 606
AclWI	GGATC	1 cut(s)	875
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	413, 799
AfiI	CCNNNNNNNGG	4 cut(s)	762, 986, 987, 988
AflII	CTTAAG	1 cut(s)	826
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	3 cut(s)	128, 338, 819
AluBI	AGCT	5 cut(s)	122, 563, 599, 731, 1005
AluI	AGCT	5 cut(s)	122, 563, 599, 731, 1005
Alw21I	GWGCWC	1 cut(s)	745
AlwI	GGATC	1 cut(s)	875
AoxI	GGCC	3 cut(s)	23, 40, 547
ApaI	GGGCCC	2 cut(s)	27, 44
ApeKI	GCWGC	2 cut(s)	119, 1002
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	5 cut(s)	23, 24, 40, 41, 548
AsuHPI	GGTGA	2 cut(s)	85, 635
BaeGI	GKGCMC	2 cut(s)	27, 44
BanII	GRGCYC	2 cut(s)	27, 44
BbsI	GAAGAC	2 cut(s)	717, 758
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	131, 1014
BccI	CCATC	4 cut(s)	212, 451, 650, 811
BciVI	GTATCC	1 cut(s)	240
BclI	TGATCA	4 cut(s)	34, 691, 790, 946
BfaI	CTAG	3 cut(s)	774, 957, 1096
BfmI	CTRYAG	2 cut(s)	273, 594
BfrI	CTTAAG	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	1014
BisI	GCNGC	2 cut(s)	120, 1003
BlsI	GCNGC	2 cut(s)	121, 1004
BmgT120I	GGNCC	5 cut(s)	23, 24, 40, 41, 548
BmiI	GGNNCC	4 cut(s)	25, 26, 42, 43
BmsI	GCATC	2 cut(s)	532, 901
BpiI	GAAGAC	2 cut(s)	717, 758
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	729
Bsa29I	ATCGAT	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	715
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	4 cut(s)	762, 986, 987, 988
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	160, 444
BseCI	ATCGAT	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	2 cut(s)	661, 967
BseLI	CCNNNNNNNGG	4 cut(s)	762, 986, 987, 988
BseMI	GCAATG	2 cut(s)	160, 444
BseMII	CTCAG	2 cut(s)	326, 414
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	781
BseSI	GKGCMC	2 cut(s)	27, 44
BseXI	GCAGC	2 cut(s)	131, 1014
BshFI	GGCC	3 cut(s)	25, 42, 549
BshVI	ATCGAT	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	4 cut(s)	762, 986, 987, 988
BsnI	GGCC	3 cut(s)	25, 42, 549
Bsp120I	GGGCCC	2 cut(s)	23, 40
Bsp1286I	GDGCHC	3 cut(s)	27, 44, 745
BspACI	CCGC	3 cut(s)	151, 360, 606
BspANI	GGCC	3 cut(s)	25, 42, 549
BspCNI	CTCAG	2 cut(s)	325, 415
BspDI	ATCGAT	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	4 cut(s)	25, 26, 42, 43
BspPI	GGATC	1 cut(s)	875
BspTI	CTTAAG	1 cut(s)	826
BsrDI	GCAATG	2 cut(s)	160, 444
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	715
Bst4CI	ACNGT	2 cut(s)	292, 997
BstAFI	CTTAAG	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	312, 423
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	2 cut(s)	661, 967
BstHHI	GCGC	1 cut(s)	861
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 858
BstNSI	RCATGY	2 cut(s)	244, 589
BstSFI	CTRYAG	2 cut(s)	273, 594
BstSLI	GKGCMC	2 cut(s)	27, 44
BstV1I	GCAGC	2 cut(s)	131, 1014
BstV2I	GAAGAC	2 cut(s)	717, 758
BstX2I	RGATCY	2 cut(s)	867, 1014
BstYI	RGATCY	2 cut(s)	867, 1014
Bsu15I	ATCGAT	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	25, 42, 549
BsuTUI	ATCGAT	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	661, 967
BtsI	GCAGTG	1 cut(s)	868
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	1 cut(s)	547
CciI	TCATGA	1 cut(s)	883
CfoI	GCGC	1 cut(s)	861
Cfr13I	GGNCC	5 cut(s)	23, 24, 40, 41, 548
ClaI	ATCGAT	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	412, 798
CviAII	CATG	7 cut(s)	81, 241, 586, 695, 737, 884, 1028
CviJI	RGCY	9 cut(s)	25, 42, 122, 427, 549, 563, 599, 731, 1005
CviKI_1	RGCY	9 cut(s)	25, 42, 122, 427, 549, 563, 599, 731, 1005
CviQI	GTAC	2 cut(s)	412, 798
DdeI	CTNAG	2 cut(s)	312, 423
DraIII	CACNNNGTG	1 cut(s)	721
Eco24I	GRGCYC	2 cut(s)	27, 44
EcoO109I	RGGNCCY	4 cut(s)	23, 24, 40, 41
EcoT38I	GRGCYC	2 cut(s)	27, 44
FaeI	CATG	7 cut(s)	84, 244, 589, 698, 740, 887, 1031
FatI	CATG	7 cut(s)	80, 240, 585, 694, 736, 883, 1027
FauNDI	CATATG	1 cut(s)	1062
FbaI	TGATCA	4 cut(s)	34, 691, 790, 946
Fnu4HI	GCNGC	2 cut(s)	120, 1003
FokI	GGATG	2 cut(s)	668, 954
FriOI	GRGCYC	2 cut(s)	27, 44
Fsp4HI	GCNGC	2 cut(s)	120, 1003
FspBI	CTAG	3 cut(s)	774, 957, 1096
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	2 cut(s)	120, 1003
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	25, 42, 549
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	7 cut(s)	84, 244, 589, 698, 740, 887, 1031
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HincII	GTYRAC	2 cut(s)	374, 591
HindII	GTYRAC	2 cut(s)	374, 591
HinfI	GANTC	4 cut(s)	98, 566, 663, 878
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	85, 635
Hpy166II	GTNNAC	2 cut(s)	374, 591
Hpy188I	TCNGA	2 cut(s)	808, 1075
Hpy188III	TCNNGA	6 cut(s)	128, 299, 354, 422, 746, 884
Hpy8I	GTNNAC	2 cut(s)	374, 591
HpyAV	CCTTC	3 cut(s)	14, 674, 881
HpyCH4III	ACNGT	2 cut(s)	292, 997
HpyCH4V	TGCA	6 cut(s)	244, 251, 329, 382, 782, 1083
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 858
HpyF3I	CTNAG	2 cut(s)	312, 423
Hsp92II	CATG	7 cut(s)	84, 244, 589, 698, 740, 887, 1031
HspAI	GCGC	1 cut(s)	859
Ksp22I	TGATCA	4 cut(s)	34, 691, 790, 946
Lsp1109I	GCAGC	2 cut(s)	131, 1014
LweI	GCATC	2 cut(s)	532, 901
MaeI	CTAG	3 cut(s)	774, 957, 1096
MboII	GAAGA	5 cut(s)	155, 639, 722, 763, 807
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	867, 1014
MhlI	GDGCHC	3 cut(s)	27, 44, 745
MluCI	AATT	9 cut(s)	30, 338, 474, 668, 685, 819, 899, 1021, 1042
MnlI	CCTC	8 cut(s)	64, 350, 438, 614, 653, 759, 762, 770
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	4 cut(s)	105, 477, 555, 827
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	3 cut(s)	122, 599, 731
MspCI	CTTAAG	1 cut(s)	826
MspI	CCGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	819
MwoI	GCNNNNNNNGC	2 cut(s)	366, 858
NdeI	CATATG	1 cut(s)	1062
NlaIII	CATG	7 cut(s)	84, 244, 589, 698, 740, 887, 1031
NlaIV	GGNNCC	4 cut(s)	25, 26, 42, 43
NspI	RCATGY	2 cut(s)	244, 589
PagI	TCATGA	1 cut(s)	883
PciI	ACATGT	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	98, 566, 663, 878
PkrI	GCNGC	2 cut(s)	121, 1004
PscI	ACATGT	1 cut(s)	585
PsiI	TTATAA	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	25, 26, 42, 43
PspOMI	GGGCCC	2 cut(s)	23, 40
PspPI	GGNCC	5 cut(s)	23, 24, 40, 41, 548
PsuI	RGATCY	2 cut(s)	867, 1014
PvuII	CAGCTG	3 cut(s)	122, 599, 731
RsaI	GTAC	2 cut(s)	413, 799
RsaNI	GTAC	2 cut(s)	412, 798
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	105, 477, 555, 827
SatI	GCNGC	2 cut(s)	120, 1003
Sau96I	GGNCC	5 cut(s)	23, 24, 40, 41, 548
SduI	GDGCHC	3 cut(s)	27, 44, 745
SfaNI	GCATC	2 cut(s)	532, 901
SfcI	CTRYAG	2 cut(s)	273, 594
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	744, 826
SmoI	CTYRAG	2 cut(s)	744, 826
Sse9I	AATT	9 cut(s)	30, 338, 474, 668, 685, 819, 899, 1021, 1042
SsiI	CCGC	3 cut(s)	151, 360, 606
SspMI	CTAG	3 cut(s)	774, 957, 1096
TaaI	ACNGT	2 cut(s)	292, 997
TaqI	TCGA	2 cut(s)	353, 394
TasI	AATT	9 cut(s)	30, 338, 474, 668, 685, 819, 899, 1021, 1042
TfiI	GAWTC	4 cut(s)	98, 566, 663, 878
Tru1I	TTAA	4 cut(s)	105, 477, 555, 827
Tru9I	TTAA	4 cut(s)	105, 477, 555, 827
TscAI	CASTG	1 cut(s)	868
TseI	GCWGC	2 cut(s)	119, 1002
TspDTI	ATGAA	7 cut(s)	648, 723, 891, 900, 956, 1022, 1078
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	1 cut(s)	868
Vha464I	CTTAAG	1 cut(s)	826
XceI	RCATGY	2 cut(s)	244, 589
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	3 cut(s)	774, 957, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.