Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC1 | PF03109 | 253 - 500 | 8.7e-85 | ABC1 atypical kinase-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1941 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1996 |
| AccBSI | CCGCTC | 2 cut(s) | 149, 2242 |
| AccI | GTMKAC | 1 cut(s) | 717 |
| AccII | CGCG | 3 cut(s) | 49, 248, 425 |
| AccIII | TCCGGA | 1 cut(s) | 80 |
| AclWI | GGATC | 8 cut(s) | 771, 960, 1229, 1257, 1334, 1472, 1485, 1805 |
| AcoI | YGGCCR | 2 cut(s) | 478, 694 |
| AcsI | RAATTY | 4 cut(s) | 98, 581, 1311, 1865 |
| AcuI | CTGAAG | 5 cut(s) | 743, 986, 1478, 1723, 2033 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 476 |
| AfaI | GTAC | 4 cut(s) | 260, 933, 1173, 1286 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 559, 886, 1349, 1996 |
| AflII | CTTAAG | 2 cut(s) | 622, 971 |
| AflIII | ACRYGT | 1 cut(s) | 423 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 748, 1018 |
| AjnI | CCWGG | 4 cut(s) | 472, 940, 1216, 1348 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 287, 319, 801, 833 |
| AleI | CACNNNNGTG | 1 cut(s) | 347 |
| Alw21I | GWGCWC | 2 cut(s) | 33, 826 |
| Alw26I | GTCTC | 1 cut(s) | 1323 |
| AlwI | GGATC | 8 cut(s) | 771, 960, 1229, 1257, 1334, 1472, 1485, 1805 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1198, 1276, 2258 |
| Aor13HI | TCCGGA | 1 cut(s) | 80 |
| AoxI | GGCC | 5 cut(s) | 127, 339, 478, 694, 938 |
| ApeKI | GCWGC | 7 cut(s) | 445, 869, 872, 1595, 1694, 1724, 2096 |
| ApoI | RAATTY | 4 cut(s) | 98, 581, 1311, 1865 |
| AseI | ATTAAT | 1 cut(s) | 2136 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 999, 1311 |
| AspLEI | GCGC | 3 cut(s) | 66, 248, 637 |
| AspS9I | GGNCC | 3 cut(s) | 519, 674, 1489 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 319, 884, 2018 |
| AsuII | TTCGAA | 1 cut(s) | 239 |
| AsuNHI | GCTAGC | 1 cut(s) | 875 |
| AvaII | GGWCC | 3 cut(s) | 519, 674, 1489 |
| AxyI | CCTNAGG | 2 cut(s) | 980, 1571 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 780, 813 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BamHI | GGATCC | 1 cut(s) | 1477 |
| BanII | GRGCYC | 2 cut(s) | 33, 826 |
| BbsI | GAAGAC | 1 cut(s) | 2081 |
| Bbv12I | GWGCWC | 2 cut(s) | 33, 826 |
| BbvI | GCAGC | 7 cut(s) | 432, 856, 859, 1582, 1681, 1736, 2083 |
| BccI | CCATC | 5 cut(s) | 790, 1019, 1405, 1784, 1908 |
| BceAI | ACGGC | 1 cut(s) | 465 |
| BciT130I | CCWGG | 4 cut(s) | 474, 942, 1218, 1350 |
| BclI | TGATCA | 2 cut(s) | 198, 2109 |
| BcoDI | GTCTC | 1 cut(s) | 1323 |
| BfaI | CTAG | 1 cut(s) | 876 |
| BfoI | RGCGCY | 2 cut(s) | 67, 638 |
| BfrI | CTTAAG | 2 cut(s) | 622, 971 |
| BmcAI | AGTACT | 1 cut(s) | 260 |
| Bme1390I | CCNGG | 4 cut(s) | 474, 942, 1218, 1350 |
| Bme18I | GGWCC | 3 cut(s) | 519, 674, 1489 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 748, 1018 |
| BmgT120I | GGNCC | 3 cut(s) | 519, 674, 1489 |
| BmiI | GGNNCC | 2 cut(s) | 675, 1479 |
| BmrFI | CCNGG | 4 cut(s) | 474, 942, 1218, 1350 |
| BmsI | GCATC | 2 cut(s) | 1428, 2217 |
| BmtI | GCTAGC | 1 cut(s) | 879 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1544 |
| BpiI | GAAGAC | 1 cut(s) | 2081 |
| BpmI | CTGGAG | 2 cut(s) | 1551, 1899 |
| Bpu14I | TTCGAA | 1 cut(s) | 239 |
| BpuEI | CTTGAG | 2 cut(s) | 714, 932 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1344 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 7 cut(s) | 47, 342, 375, 522, 880, 1216, 1217 |
| BsaWI | WCCGGW | 2 cut(s) | 25, 80 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 179, 209, 410, 440, 813, 843, 1872, 1902 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 559, 886, 1349, 1996 |
| Bse118I | RCCGGY | 2 cut(s) | 66, 1266 |
| Bse1I | ACTGG | 3 cut(s) | 745, 1534, 1857 |
| Bse21I | CCTNAGG | 2 cut(s) | 980, 1571 |
| Bse3DI | GCAATG | 2 cut(s) | 1506, 1719 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1344 |
| BseAI | TCCGGA | 1 cut(s) | 80 |
| BseBI | CCWGG | 4 cut(s) | 474, 942, 1218, 1350 |
| BseDI | CCNNGG | 7 cut(s) | 47, 342, 375, 522, 880, 1216, 1217 |
| BseGI | GGATG | 3 cut(s) | 1345, 1372, 1795 |
| BseJI | GATNNNNATC | 1 cut(s) | 1344 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 559, 886, 1349, 1996 |
| BseMI | GCAATG | 2 cut(s) | 1506, 1719 |
| BseMII | CTCAG | 6 cut(s) | 656, 971, 1643, 1821, 1943, 2031 |
| BseNI | ACTGG | 3 cut(s) | 745, 1534, 1857 |
| BseXI | GCAGC | 7 cut(s) | 432, 856, 859, 1582, 1681, 1736, 2083 |
| BseYI | CCCAGC | 2 cut(s) | 1276, 1747 |
| BsgI | GTGCAG | 1 cut(s) | 1581 |
| Bsh1236I | CGCG | 3 cut(s) | 49, 248, 425 |
| Bsh1285I | CGRYCG | 1 cut(s) | 137 |
| BshFI | GGCC | 5 cut(s) | 129, 341, 480, 696, 940 |
| BsiEI | CGRYCG | 1 cut(s) | 137 |
| BsiHKAI | GWGCWC | 2 cut(s) | 33, 826 |
| BsiSI | CCGG | 4 cut(s) | 26, 67, 81, 1267 |
| BslFI | GGGAC | 5 cut(s) | 924, 1145, 1199, 1293, 1931 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 559, 886, 1349, 1996 |
| BsmAI | GTCTC | 1 cut(s) | 1323 |
| BsmFI | GGGAC | 5 cut(s) | 924, 1145, 1199, 1293, 1931 |
| BsmI | GAATGC | 2 cut(s) | 838, 2048 |
| BsnI | GGCC | 5 cut(s) | 129, 341, 480, 696, 940 |
| Bsp119I | TTCGAA | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 2 cut(s) | 33, 826 |
| Bsp13I | TCCGGA | 1 cut(s) | 80 |
| BspANI | GGCC | 5 cut(s) | 129, 341, 480, 696, 940 |
| BspCNI | CTCAG | 6 cut(s) | 657, 972, 1644, 1822, 1942, 2032 |
| BspEI | TCCGGA | 1 cut(s) | 80 |
| BspFNI | CGCG | 3 cut(s) | 49, 248, 425 |
| BspLI | GGNNCC | 2 cut(s) | 675, 1479 |
| BspOI | GCTAGC | 1 cut(s) | 879 |
| BspPI | GGATC | 8 cut(s) | 771, 960, 1229, 1257, 1334, 1472, 1485, 1805 |
| BspQI | GCTCTTC | 2 cut(s) | 807, 1578 |
| BspT104I | TTCGAA | 1 cut(s) | 239 |
| BspTI | CTTAAG | 2 cut(s) | 622, 971 |
| BsrBI | CCGCTC | 2 cut(s) | 149, 2242 |
| BsrDI | GCAATG | 2 cut(s) | 1506, 1719 |
| BsrFI | RCCGGY | 2 cut(s) | 66, 1266 |
| BsrI | ACTGG | 3 cut(s) | 745, 1534, 1857 |
| BssAI | RCCGGY | 2 cut(s) | 66, 1266 |
| BssECI | CCNNGG | 7 cut(s) | 47, 342, 375, 522, 880, 1216, 1217 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 3 cut(s) | 375, 522, 880 |
| Bst2UI | CCWGG | 4 cut(s) | 474, 942, 1218, 1350 |
| Bst4CI | ACNGT | 8 cut(s) | 21, 346, 896, 1284, 1563, 1845, 2068, 2080 |
| Bst6I | CTCTTC | 5 cut(s) | 174, 348, 807, 1028, 1578 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 2 cut(s) | 622, 971 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2171 |
| BstBI | TTCGAA | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 8 cut(s) | 68, 443, 639, 698, 877, 1692, 1977, 2154 |
| BstDEI | CTNAG | 9 cut(s) | 60, 665, 980, 1571, 1652, 1830, 1929, 2018, 2040 |
| BstDSI | CCRYGG | 2 cut(s) | 47, 342 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 557, 884 |
| BstF5I | GGATG | 3 cut(s) | 1345, 1372, 1795 |
| BstFNI | CGCG | 3 cut(s) | 49, 248, 425 |
| BstH2I | RGCGCY | 2 cut(s) | 67, 638 |
| BstHHI | GCGC | 3 cut(s) | 66, 248, 637 |
| BstMAI | GTCTC | 1 cut(s) | 1323 |
| BstMCI | CGRYCG | 1 cut(s) | 137 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 222, 338, 442, 634, 1112, 1724, 2096, 2162, 2171 |
| BstNI | CCWGG | 4 cut(s) | 474, 942, 1218, 1350 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1544 |
| BstSCI | CCNGG | 4 cut(s) | 472, 940, 1216, 1348 |
| BstUI | CGCG | 3 cut(s) | 49, 248, 425 |
| BstV1I | GCAGC | 7 cut(s) | 432, 856, 859, 1582, 1681, 1736, 2083 |
| BstV2I | GAAGAC | 1 cut(s) | 2081 |
| BstX2I | RGATCY | 2 cut(s) | 952, 1477 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 349 |
| BstYI | RGATCY | 2 cut(s) | 952, 1477 |
| Bsu36I | CCTNAGG | 2 cut(s) | 980, 1571 |
| BsuRI | GGCC | 5 cut(s) | 129, 341, 480, 696, 940 |
| BtgI | CCRYGG | 2 cut(s) | 47, 342 |
| BtgZI | GCGATG | 1 cut(s) | 1927 |
| BtsCI | GGATG | 3 cut(s) | 1345, 1372, 1795 |
| BtsI | GCAGTG | 1 cut(s) | 232 |
| BtsIMutI | CAGTG | 5 cut(s) | 232, 1649, 1788, 1827, 1850 |
| Cac8I | GCNNGC | 8 cut(s) | 68, 443, 639, 698, 877, 1692, 1977, 2154 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1198, 1276, 2258 |
| CfoI | GCGC | 3 cut(s) | 66, 248, 637 |
| Cfr10I | RCCGGY | 2 cut(s) | 66, 1266 |
| Cfr13I | GGNCC | 3 cut(s) | 519, 674, 1489 |
| Cfr42I | CCGCGG | 1 cut(s) | 50 |
| CseI | GACGC | 2 cut(s) | 431, 1577 |
| CsiI | ACCWGGT | 1 cut(s) | 472 |
| Csp6I | GTAC | 4 cut(s) | 259, 932, 1172, 1285 |
| CviAII | CATG | 2 cut(s) | 1322, 1334 |
| CviQI | GTAC | 4 cut(s) | 259, 932, 1172, 1285 |
| DdeI | CTNAG | 9 cut(s) | 60, 665, 980, 1571, 1652, 1830, 1929, 2018, 2040 |
| DraI | TTTAAA | 1 cut(s) | 1642 |
| DraIII | CACNNNGTG | 1 cut(s) | 476 |
| DriI | GACNNNNNGTC | 2 cut(s) | 748, 1018 |
| EaeI | YGGCCR | 2 cut(s) | 478, 694 |
| Eam1104I | CTCTTC | 5 cut(s) | 174, 348, 807, 1028, 1578 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 748, 1018 |
| EarI | CTCTTC | 5 cut(s) | 174, 348, 807, 1028, 1578 |
| EciI | GGCGGA | 2 cut(s) | 206, 350 |
| Ecl136II | GAGCTC | 2 cut(s) | 31, 824 |
| Eco130I | CCWWGG | 3 cut(s) | 375, 522, 880 |
| Eco147I | AGGCCT | 1 cut(s) | 940 |
| Eco24I | GRGCYC | 2 cut(s) | 33, 826 |
| Eco32I | GATATC | 1 cut(s) | 1825 |
| Eco47I | GGWCC | 3 cut(s) | 519, 674, 1489 |
| Eco53kI | GAGCTC | 2 cut(s) | 31, 824 |
| Eco57I | CTGAAG | 5 cut(s) | 743, 986, 1478, 1723, 2033 |
| Eco81I | CCTNAGG | 2 cut(s) | 980, 1571 |
| EcoICRI | GAGCTC | 2 cut(s) | 31, 824 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 557, 884 |
| EcoO109I | RGGNCCY | 2 cut(s) | 519, 1489 |
| EcoRII | CCWGG | 4 cut(s) | 472, 940, 1216, 1348 |
| EcoRV | GATATC | 1 cut(s) | 1825 |
| EcoT14I | CCWWGG | 3 cut(s) | 375, 522, 880 |
| EcoT38I | GRGCYC | 2 cut(s) | 33, 826 |
| ErhI | CCWWGG | 3 cut(s) | 375, 522, 880 |
| FaeI | CATG | 2 cut(s) | 1325, 1337 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 605, 637, 801, 833, 1575, 1607 |
| FaqI | GGGAC | 5 cut(s) | 924, 1145, 1199, 1293, 1931 |
| FatI | CATG | 2 cut(s) | 1321, 1333 |
| FauI | CCCGC | 1 cut(s) | 434 |
| FbaI | TGATCA | 2 cut(s) | 198, 2109 |
| FblI | GTMKAC | 1 cut(s) | 717 |
| FokI | GGATG | 3 cut(s) | 1332, 1379, 1802 |
| FriOI | GRGCYC | 2 cut(s) | 33, 826 |
| FspBI | CTAG | 1 cut(s) | 876 |
| GlaI | GCGC | 3 cut(s) | 65, 247, 636 |
| GsaI | CCCAGC | 2 cut(s) | 1280, 1751 |
| GsuI | CTGGAG | 2 cut(s) | 1551, 1899 |
| HaeII | RGCGCY | 2 cut(s) | 67, 638 |
| HaeIII | GGCC | 5 cut(s) | 129, 341, 480, 696, 940 |
| HapII | CCGG | 4 cut(s) | 26, 67, 81, 1267 |
| HgaI | GACGC | 2 cut(s) | 431, 1577 |
| HhaI | GCGC | 3 cut(s) | 66, 248, 637 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 1325, 1337 |
| Hin6I | GCGC | 3 cut(s) | 64, 246, 635 |
| HinP1I | GCGC | 3 cut(s) | 64, 246, 635 |
| HincII | GTYRAC | 3 cut(s) | 718, 742, 1264 |
| HindII | GTYRAC | 3 cut(s) | 718, 742, 1264 |
| HindIII | AAGCTT | 3 cut(s) | 1242, 1973, 2015 |
| HinfI | GANTC | 8 cut(s) | 141, 492, 945, 1295, 1504, 1743, 1794, 2036 |
| HpaII | CCGG | 4 cut(s) | 26, 67, 81, 1267 |
| HphI | GGTGA | 4 cut(s) | 25, 319, 884, 2018 |
| Hpy166II | GTNNAC | 4 cut(s) | 718, 742, 892, 1264 |
| Hpy8I | GTNNAC | 4 cut(s) | 718, 742, 892, 1264 |
| HpyCH4III | ACNGT | 8 cut(s) | 21, 346, 896, 1284, 1563, 1845, 2068, 2080 |
| HpyCH4V | TGCA | 9 cut(s) | 470, 899, 992, 1127, 1598, 1697, 1724, 1850, 2180 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 222, 338, 442, 634, 1112, 1724, 2096, 2162, 2171 |
| HpyF3I | CTNAG | 9 cut(s) | 60, 665, 980, 1571, 1652, 1830, 1929, 2018, 2040 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 2 cut(s) | 1325, 1337 |
| HspAI | GCGC | 3 cut(s) | 64, 246, 635 |
| Kpn2I | TCCGGA | 1 cut(s) | 80 |
| KroI | GCCGGC | 1 cut(s) | 66 |
| KroNI | GCCGGC | 1 cut(s) | 68 |
| Ksp22I | TGATCA | 2 cut(s) | 198, 2109 |
| KspI | CCGCGG | 1 cut(s) | 50 |
| LguI | GCTCTTC | 2 cut(s) | 807, 1578 |
| LmnI | GCTCC | 6 cut(s) | 28, 300, 821, 829, 1999, 2239 |
| Lsp1109I | GCAGC | 7 cut(s) | 432, 856, 859, 1582, 1681, 1736, 2083 |
| LweI | GCATC | 2 cut(s) | 1428, 2217 |
| MabI | ACCWGGT | 1 cut(s) | 472 |
| MaeI | CTAG | 1 cut(s) | 876 |
| MaeIII | GTNAC | 3 cut(s) | 15, 21, 1130 |
| MbiI | CCGCTC | 2 cut(s) | 149, 2242 |
| MfeI | CAATTG | 2 cut(s) | 1253, 1698 |
| MflI | RGATCY | 2 cut(s) | 952, 1477 |
| MhlI | GDGCHC | 2 cut(s) | 33, 826 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluI | ACGCGT | 1 cut(s) | 423 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 1 cut(s) | 939 |
| MmeI | TCCRAC | 4 cut(s) | 464, 701, 1767, 2062 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| MroI | TCCGGA | 1 cut(s) | 80 |
| MroNI | GCCGGC | 1 cut(s) | 66 |
| MroXI | GAANNNNTTC | 2 cut(s) | 999, 1311 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 8 cut(s) | 432, 558, 623, 927, 972, 1641, 2136, 2263 |
| MslI | CAYNNNNRTG | 2 cut(s) | 347, 2147 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspA1I | CMGCKG | 3 cut(s) | 49, 794, 1544 |
| MspCI | CTTAAG | 2 cut(s) | 622, 971 |
| MspI | CCGG | 4 cut(s) | 26, 67, 81, 1267 |
| MspR9I | CCNGG | 4 cut(s) | 474, 942, 1218, 1350 |
| MunI | CAATTG | 2 cut(s) | 1253, 1698 |
| Mva1269I | GAATGC | 2 cut(s) | 838, 2048 |
| MvaI | CCWGG | 4 cut(s) | 474, 942, 1218, 1350 |
| MvnI | CGCG | 3 cut(s) | 49, 248, 425 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 222, 338, 442, 634, 1112, 1724, 2096, 2162, 2171 |
| NaeI | GCCGGC | 1 cut(s) | 68 |
| NgoMIV | GCCGGC | 1 cut(s) | 66 |
| NheI | GCTAGC | 1 cut(s) | 875 |
| NlaIII | CATG | 2 cut(s) | 1325, 1337 |
| NlaIV | GGNNCC | 2 cut(s) | 675, 1479 |
| NspV | TTCGAA | 1 cut(s) | 239 |
| OliI | CACNNNNGTG | 1 cut(s) | 347 |
| PasI | CCCWGGG | 1 cut(s) | 1217 |
| PceI | AGGCCT | 1 cut(s) | 940 |
| PciSI | GCTCTTC | 2 cut(s) | 807, 1578 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 50 |
| PctI | GAATGC | 2 cut(s) | 838, 2048 |
| PdiI | GCCGGC | 1 cut(s) | 68 |
| PdmI | GAANNNNTTC | 2 cut(s) | 999, 1311 |
| PfeI | GAWTC | 7 cut(s) | 141, 492, 1295, 1504, 1743, 1794, 2036 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1996 |
| PfoI | TCCNGGA | 1 cut(s) | 1348 |
| Ple19I | CGATCG | 1 cut(s) | 137 |
| PleI | GAGTC | 1 cut(s) | 939 |
| PpsI | GAGTC | 1 cut(s) | 939 |
| PpuMI | RGGWCCY | 2 cut(s) | 519, 1489 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1544 |
| PshBI | ATTAAT | 1 cut(s) | 2136 |
| PsiI | TTATAA | 1 cut(s) | 1941 |
| Psp124BI | GAGCTC | 2 cut(s) | 33, 826 |
| Psp5II | RGGWCCY | 2 cut(s) | 519, 1489 |
| Psp6I | CCWGG | 4 cut(s) | 472, 940, 1216, 1348 |
| PspFI | CCCAGC | 2 cut(s) | 1276, 1747 |
| PspGI | CCWGG | 4 cut(s) | 472, 940, 1216, 1348 |
| PspN4I | GGNNCC | 2 cut(s) | 675, 1479 |
| PspPI | GGNCC | 3 cut(s) | 519, 674, 1489 |
| PspPPI | RGGWCCY | 2 cut(s) | 519, 1489 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1198, 1276, 2258 |
| PsuI | RGATCY | 2 cut(s) | 952, 1477 |
| PvuI | CGATCG | 1 cut(s) | 137 |
| PvuII | CAGCTG | 2 cut(s) | 794, 1544 |
| RsaI | GTAC | 4 cut(s) | 260, 933, 1173, 1286 |
| RsaNI | GTAC | 4 cut(s) | 259, 932, 1172, 1285 |
| RseI | CAYNNNNRTG | 2 cut(s) | 347, 2147 |
| SacI | GAGCTC | 2 cut(s) | 33, 826 |
| SacII | CCGCGG | 1 cut(s) | 50 |
| SalI | GTCGAC | 1 cut(s) | 716 |
| SapI | GCTCTTC | 2 cut(s) | 807, 1578 |
| SaqAI | TTAA | 8 cut(s) | 432, 558, 623, 927, 972, 1641, 2136, 2263 |
| Sau96I | GGNCC | 3 cut(s) | 519, 674, 1489 |
| ScaI | AGTACT | 1 cut(s) | 260 |
| SchI | GAGTC | 1 cut(s) | 939 |
| ScrFI | CCNGG | 4 cut(s) | 474, 942, 1218, 1350 |
| SduI | GDGCHC | 2 cut(s) | 33, 826 |
| SexAI | ACCWGGT | 1 cut(s) | 472 |
| SfaNI | GCATC | 2 cut(s) | 1428, 2217 |
| Sfr303I | CCGCGG | 1 cut(s) | 50 |
| SfuI | TTCGAA | 1 cut(s) | 239 |
| SgrBI | CCGCGG | 1 cut(s) | 50 |
| SinI | GGWCC | 3 cut(s) | 519, 674, 1489 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 347, 2147 |
| SmlI | CTYRAG | 4 cut(s) | 622, 729, 947, 971 |
| SmoI | CTYRAG | 4 cut(s) | 622, 729, 947, 971 |
| SseBI | AGGCCT | 1 cut(s) | 940 |
| SspI | AATATT | 3 cut(s) | 661, 964, 1357 |
| SspMI | CTAG | 1 cut(s) | 876 |
| SstI | GAGCTC | 2 cut(s) | 33, 826 |
| StuI | AGGCCT | 1 cut(s) | 940 |
| StyD4I | CCNGG | 4 cut(s) | 472, 940, 1216, 1348 |
| StyI | CCWWGG | 3 cut(s) | 375, 522, 880 |
| TaaI | ACNGT | 8 cut(s) | 21, 346, 896, 1284, 1563, 1845, 2068, 2080 |
| TaqI | TCGA | 8 cut(s) | 137, 239, 263, 506, 592, 717, 1816, 2146 |
| TatI | WGTACW | 2 cut(s) | 258, 931 |
| TauI | GCSGC | 5 cut(s) | 49, 129, 152, 251, 335 |
| TfiI | GAWTC | 7 cut(s) | 141, 492, 1295, 1504, 1743, 1794, 2036 |
| Tru1I | TTAA | 8 cut(s) | 432, 558, 623, 927, 972, 1641, 2136, 2263 |
| Tru9I | TTAA | 8 cut(s) | 432, 558, 623, 927, 972, 1641, 2136, 2263 |
| TscAI | CASTG | 5 cut(s) | 232, 1656, 1788, 1834, 1857 |
| TseI | GCWGC | 7 cut(s) | 445, 869, 872, 1595, 1694, 1724, 2096 |
| TspDTI | ATGAA | 4 cut(s) | 673, 873, 1688, 2247 |
| TspRI | CASTG | 5 cut(s) | 232, 1656, 1788, 1834, 1857 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1996 |
| Vha464I | CTTAAG | 2 cut(s) | 622, 971 |
| VpaK11BI | GGWCC | 3 cut(s) | 519, 674, 1489 |
| VspI | ATTAAT | 1 cut(s) | 2136 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 557, 884 |
| XapI | RAATTY | 4 cut(s) | 98, 581, 1311, 1865 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2078 |
| XmiI | GTMKAC | 1 cut(s) | 717 |
| XmnI | GAANNNNTTC | 2 cut(s) | 999, 1311 |
| XspI | CTAG | 1 cut(s) | 876 |
| ZrmI | AGTACT | 1 cut(s) | 260 |