Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

78050018 .. 78052558

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0583400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCCGTGGTTTGATGTTAAAGATGAGTTCCTAGTCTTCACTGGTTTTGGGTATATCTCGGCCACCGACGACTACAAGGTTCTCATAGCCAACTCCAAACTTGAGAAGGGAGAGAAACCCAGGATCCGCATCTACTCGTCGAAATCCAACTCTTGGAAAAGAATTCAAGATTCCCAATATTCCGTCTTGTCAAGGACAGCCGTGGGCACTCTTTTAAATGAGGCATTTCATTGGCTGGAGAGGTTTTGTGTCGTTATAGTTGCTTTCGATTTAGCAGGTGAGGAGTTCCGCACAATGCCGCTGCCTGTTGTTGAGGATCACTTTGCTGGTGACTATTTCAGACATGTAGGGGACTTTGGAGGTTGCCTCTGTGTGTTTGGTCAGGCTGATACTAATGCTGGCTCTATGGATATGTGGGTCATGAGGGAATATGATGCGGGTAACTCCTGGACTAAGCTGTTTAACTTAAAGTTTTCCAATCAGCCTGAGGGGATTATTTCTGTCAAGCCAATCTGGGTTATGGAAACTAGTACATTTCTGGAGATACATTCTAACTCTGAAAGGAGGGTGAAGTTGGTAAGGAGTTATCATAACGAAGAGAAGATCGAAGAGATTCATATGGATAGACAGTCAATGATTGGATATGAAGAGAGTCTACTTTGGCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

223

Amino Acids

25.91

Weight (kDa)

5.23

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	11 - 209	1.8e-17	F-box associated beta propeller domain
FBA_3	PF08268	15 - 153	1.6e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	655
AciI	CCGC	4 cut(s)	127, 289, 299, 437
AclWI	GGATC	3 cut(s)	118, 131, 324
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	162
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	167
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	119, 446
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
AlwI	GGATC	3 cut(s)	118, 131, 324
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	612
AsuHPI	GGTGA	3 cut(s)	290, 341, 580
AxyI	CCTNAGG	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	121, 448
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	2 cut(s)	32, 528
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	299, 302
BlsI	GCNGC	2 cut(s)	300, 303
Bme1390I	CCNGG	2 cut(s)	121, 448
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	121, 448
BmsI	GCATC	2 cut(s)	138, 424
BpiI	GAAGAC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	351, 383
BpmI	CTGGAG	2 cut(s)	257, 560
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	5, 119, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	46
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	121, 448
BseDI	CCNNGG	3 cut(s)	5, 119, 201
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	288
BshFI	GGCC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	123, 316, 603
BspACI	CCGC	4 cut(s)	127, 289, 299, 437
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	118, 131, 324
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	5, 119, 201
BssMI	GATC	3 cut(s)	123, 316, 603
Bst2UI	CCWGG	2 cut(s)	121, 448
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	3 cut(s)	591, 603, 642
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	453, 486
BstDSI	CCRYGG	2 cut(s)	5, 201
BstKTI	GATC	3 cut(s)	126, 319, 606
BstMBI	GATC	3 cut(s)	123, 316, 603
BstNI	CCWGG	2 cut(s)	121, 448
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	119, 446
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	2 cut(s)	5, 201
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	400
CciI	TCATGA	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	2 cut(s)	344, 421
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	2 cut(s)	453, 486
DpnI	GATC	3 cut(s)	125, 318, 605
DpnII	GATC	3 cut(s)	123, 316, 603
DraI	TTTAAA	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	591, 603, 642
EarI	CTCTTC	3 cut(s)	591, 603, 642
Eco81I	CCTNAGG	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	119, 446
FaeI	CATG	2 cut(s)	347, 424
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	343, 420
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	618
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	299, 302
Fsp4HI	GCNGC	2 cut(s)	299, 302
FspBI	CTAG	2 cut(s)	32, 528
GluI	GCNGC	2 cut(s)	299, 302
GsuI	CTGGAG	2 cut(s)	257, 560
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	347, 424
HinfI	GANTC	3 cut(s)	170, 613, 652
HphI	GGTGA	3 cut(s)	290, 341, 580
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	2 cut(s)	341, 559
Hpy188III	TCNNGA	3 cut(s)	167, 421, 539
Hpy8I	GTNNAC	1 cut(s)	656
Hpy99I	CGWCG	2 cut(s)	71, 142
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	630
HpyF3I	CTNAG	2 cut(s)	453, 486
Hsp92II	CATG	2 cut(s)	347, 424
Kzo9I	GATC	3 cut(s)	123, 316, 603
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	138, 424
MaeI	CTAG	2 cut(s)	32, 528
MaeIII	GTNAC	2 cut(s)	329, 440
MalI	GATC	3 cut(s)	125, 318, 605
MboI	GATC	3 cut(s)	123, 316, 603
MboII	GAAGA	5 cut(s)	28, 608, 613, 620, 659
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	214, 234, 274, 307, 353, 377, 417, 481, 558
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	4 cut(s)	18, 215, 462, 467
MspA1I	CMGCKG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	121, 448
MvaI	CCWGG	2 cut(s)	121, 448
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	3 cut(s)	123, 316, 603
NlaIII	CATG	2 cut(s)	347, 424
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	1 cut(s)	347
PagI	TCATGA	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	266
PciI	ACATGT	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	170, 613
PflMI	CCANNNNNTGG	1 cut(s)	153
PfoI	TCCNGGA	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	300, 303
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PscI	ACATGT	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	119, 446
PspGI	CCWGG	2 cut(s)	119, 446
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	18, 215, 462, 467
SatI	GCNGC	2 cut(s)	299, 302
Sau3AI	GATC	3 cut(s)	123, 316, 603
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	2 cut(s)	121, 448
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	5 cut(s)	81, 245, 280, 364, 459
SfaNI	GCATC	2 cut(s)	138, 424
SmlI	CTYRAG	2 cut(s)	101, 665
SmoI	CTYRAG	2 cut(s)	101, 665
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	4 cut(s)	127, 289, 299, 437
SspI	AATATT	1 cut(s)	179
SspMI	CTAG	2 cut(s)	32, 528
StyD4I	CCNGG	2 cut(s)	119, 446
TaaI	ACNGT	1 cut(s)	630
TaqI	TCGA	3 cut(s)	140, 267, 606
TasI	AATT	1 cut(s)	162
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	170, 613
Tru1I	TTAA	4 cut(s)	18, 215, 462, 467
Tru9I	TTAA	4 cut(s)	18, 215, 462, 467
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	218, 605, 660
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	153
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	32, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.