Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 912 |
| AciI | CCGC | 1 cut(s) | 757 |
| AclWI | GGATC | 4 cut(s) | 95, 316, 585, 814 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AcyI | GRCGYC | 1 cut(s) | 909 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AgsI | TTSAA | 6 cut(s) | 241, 276, 332, 356, 491, 644 |
| AjnI | CCWGG | 2 cut(s) | 295, 802 |
| AluBI | AGCT | 8 cut(s) | 302, 389, 409, 530, 575, 638, 952, 963 |
| AluI | AGCT | 8 cut(s) | 302, 389, 409, 530, 575, 638, 952, 963 |
| Alw21I | GWGCWC | 1 cut(s) | 25 |
| Alw26I | GTCTC | 2 cut(s) | 531, 916 |
| AlwI | GGATC | 4 cut(s) | 95, 316, 585, 814 |
| AoxI | GGCC | 1 cut(s) | 693 |
| ApeKI | GCWGC | 3 cut(s) | 518, 521, 581 |
| AspLEI | GCGC | 1 cut(s) | 858 |
| AsuHPI | GGTGA | 1 cut(s) | 614 |
| AsuNHI | GCTAGC | 1 cut(s) | 145 |
| Bbv12I | GWGCWC | 1 cut(s) | 25 |
| BbvI | GCAGC | 3 cut(s) | 505, 508, 568 |
| BccI | CCATC | 6 cut(s) | 11, 271, 371, 439, 642, 807 |
| BceAI | ACGGC | 1 cut(s) | 843 |
| BciT130I | CCWGG | 2 cut(s) | 297, 804 |
| BclI | TGATCA | 1 cut(s) | 616 |
| BcoDI | GTCTC | 2 cut(s) | 531, 916 |
| BfaI | CTAG | 2 cut(s) | 146, 527 |
| BisI | GCNGC | 3 cut(s) | 519, 522, 582 |
| BlsI | GCNGC | 3 cut(s) | 520, 523, 583 |
| Bme1390I | CCNGG | 2 cut(s) | 297, 804 |
| BmrFI | CCNGG | 2 cut(s) | 297, 804 |
| BmsI | GCATC | 2 cut(s) | 223, 568 |
| BmtI | GCTAGC | 1 cut(s) | 149 |
| BpmI | CTGGAG | 1 cut(s) | 318 |
| BpuEI | CTTGAG | 1 cut(s) | 898 |
| BsaBI | GATNNNNATC | 1 cut(s) | 798 |
| BsaHI | GRCGYC | 1 cut(s) | 909 |
| BsaI | GGTCTC | 1 cut(s) | 531 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| Bse3DI | GCAATG | 2 cut(s) | 156, 447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 798 |
| BseBI | CCWGG | 2 cut(s) | 297, 804 |
| BseGI | GGATG | 3 cut(s) | 55, 653, 799 |
| BseJI | GATNNNNATC | 1 cut(s) | 798 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMI | GCAATG | 2 cut(s) | 156, 447 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseRI | GAGGAG | 2 cut(s) | 419, 729 |
| BseXI | GCAGC | 3 cut(s) | 505, 508, 568 |
| BseYI | CCCAGC | 1 cut(s) | 45 |
| BshFI | GGCC | 1 cut(s) | 695 |
| BsiHKAI | GWGCWC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 2 cut(s) | 531, 916 |
| BsmBI | CGTCTC | 1 cut(s) | 916 |
| BsmI | GAATGC | 1 cut(s) | 764 |
| BsnI | GGCC | 1 cut(s) | 695 |
| Bso31I | GGTCTC | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 1 cut(s) | 25 |
| Bsp143I | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| BspACI | CCGC | 1 cut(s) | 757 |
| BspANI | GGCC | 1 cut(s) | 695 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspOI | GCTAGC | 1 cut(s) | 149 |
| BspPI | GGATC | 4 cut(s) | 95, 316, 585, 814 |
| BspQI | GCTCTTC | 1 cut(s) | 126 |
| BspTNI | GGTCTC | 1 cut(s) | 531 |
| BsrDI | GCAATG | 2 cut(s) | 156, 447 |
| BssMI | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| BssNI | GRCGYC | 1 cut(s) | 909 |
| Bst2UI | CCWGG | 2 cut(s) | 297, 804 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| Bst6I | CTCTTC | 2 cut(s) | 126, 742 |
| BstACI | GRCGYC | 1 cut(s) | 909 |
| BstC8I | GCNNGC | 3 cut(s) | 147, 820, 900 |
| BstDEI | CTNAG | 1 cut(s) | 105 |
| BstF5I | GGATG | 3 cut(s) | 55, 653, 799 |
| BstHHI | GCGC | 1 cut(s) | 858 |
| BstKTI | GATC | 5 cut(s) | 103, 311, 593, 619, 809 |
| BstMAI | GTCTC | 2 cut(s) | 531, 916 |
| BstMBI | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 415, 436, 527, 581 |
| BstNI | CCWGG | 2 cut(s) | 297, 804 |
| BstSCI | CCNGG | 2 cut(s) | 295, 802 |
| BstV1I | GCAGC | 3 cut(s) | 505, 508, 568 |
| BstX2I | RGATCY | 2 cut(s) | 100, 590 |
| BstYI | RGATCY | 2 cut(s) | 100, 590 |
| BsuRI | GGCC | 1 cut(s) | 695 |
| BtsCI | GGATG | 3 cut(s) | 55, 653, 799 |
| Cac8I | GCNNGC | 3 cut(s) | 147, 820, 900 |
| CfoI | GCGC | 1 cut(s) | 858 |
| CviAII | CATG | 4 cut(s) | 115, 131, 267, 847 |
| DdeI | CTNAG | 1 cut(s) | 105 |
| DpnI | GATC | 5 cut(s) | 102, 310, 592, 618, 808 |
| DpnII | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| DraI | TTTAAA | 1 cut(s) | 879 |
| Eam1104I | CTCTTC | 2 cut(s) | 126, 742 |
| EarI | CTCTTC | 2 cut(s) | 126, 742 |
| Eco31I | GGTCTC | 1 cut(s) | 531 |
| Eco32I | GATATC | 1 cut(s) | 796 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoRII | CCWGG | 2 cut(s) | 295, 802 |
| EcoRV | GATATC | 1 cut(s) | 796 |
| Esp3I | CGTCTC | 1 cut(s) | 916 |
| FaeI | CATG | 4 cut(s) | 118, 134, 270, 850 |
| FatI | CATG | 4 cut(s) | 114, 130, 266, 846 |
| FauNDI | CATATG | 1 cut(s) | 737 |
| FbaI | TGATCA | 1 cut(s) | 616 |
| Fnu4HI | GCNGC | 3 cut(s) | 519, 522, 582 |
| FokI | GGATG | 3 cut(s) | 62, 660, 786 |
| Fsp4HI | GCNGC | 3 cut(s) | 519, 522, 582 |
| FspBI | CTAG | 2 cut(s) | 146, 527 |
| GlaI | GCGC | 1 cut(s) | 857 |
| GluI | GCNGC | 3 cut(s) | 519, 522, 582 |
| GsaI | CCCAGC | 1 cut(s) | 49 |
| GsuI | CTGGAG | 1 cut(s) | 318 |
| HaeIII | GGCC | 1 cut(s) | 695 |
| HhaI | GCGC | 1 cut(s) | 858 |
| Hin1I | GRCGYC | 1 cut(s) | 909 |
| Hin1II | CATG | 4 cut(s) | 118, 134, 270, 850 |
| Hin6I | GCGC | 1 cut(s) | 856 |
| HinP1I | GCGC | 1 cut(s) | 856 |
| HincII | GTYRAC | 2 cut(s) | 510, 814 |
| HindII | GTYRAC | 2 cut(s) | 510, 814 |
| HindIII | AAGCTT | 1 cut(s) | 636 |
| HinfI | GANTC | 3 cut(s) | 90, 341, 605 |
| HpaI | GTTAAC | 1 cut(s) | 510 |
| HphI | GGTGA | 1 cut(s) | 614 |
| Hpy166II | GTNNAC | 4 cut(s) | 510, 814, 863, 973 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 536 |
| Hpy8I | GTNNAC | 4 cut(s) | 510, 814, 863, 973 |
| HpyAV | CCTTC | 2 cut(s) | 638, 681 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4IV | ACGT | 1 cut(s) | 909 |
| HpyCH4V | TGCA | 7 cut(s) | 130, 161, 350, 439, 452, 584, 958 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 415, 436, 527, 581 |
| HpyF3I | CTNAG | 1 cut(s) | 105 |
| HpySE526I | ACGT | 1 cut(s) | 909 |
| Hsp92I | GRCGYC | 1 cut(s) | 909 |
| Hsp92II | CATG | 4 cut(s) | 118, 134, 270, 850 |
| HspAI | GCGC | 1 cut(s) | 856 |
| Ksp22I | TGATCA | 1 cut(s) | 616 |
| KspAI | GTTAAC | 1 cut(s) | 510 |
| Kzo9I | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| LguI | GCTCTTC | 1 cut(s) | 126 |
| LmnI | GCTCC | 3 cut(s) | 20, 299, 406 |
| Lsp1109I | GCAGC | 3 cut(s) | 505, 508, 568 |
| LweI | GCATC | 2 cut(s) | 223, 568 |
| MaeI | CTAG | 2 cut(s) | 146, 527 |
| MaeII | ACGT | 1 cut(s) | 909 |
| MaeIII | GTNAC | 1 cut(s) | 63 |
| MalI | GATC | 5 cut(s) | 102, 310, 592, 618, 808 |
| MboI | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| MboII | GAAGA | 3 cut(s) | 113, 759, 898 |
| MfeI | CAATTG | 1 cut(s) | 513 |
| MflI | RGATCY | 2 cut(s) | 100, 590 |
| MhlI | GDGCHC | 1 cut(s) | 25 |
| MluCI | AATT | 3 cut(s) | 75, 138, 513 |
| MmeI | TCCRAC | 2 cut(s) | 76, 286 |
| MnlI | CCTC | 6 cut(s) | 397, 562, 707, 710, 743, 913 |
| MseI | TTAA | 5 cut(s) | 78, 498, 509, 633, 878 |
| MspR9I | CCNGG | 2 cut(s) | 297, 804 |
| MunI | CAATTG | 1 cut(s) | 513 |
| Mva1269I | GAATGC | 1 cut(s) | 764 |
| MvaI | CCWGG | 2 cut(s) | 297, 804 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 415, 436, 527, 581 |
| NdeI | CATATG | 1 cut(s) | 737 |
| NdeII | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| NheI | GCTAGC | 1 cut(s) | 145 |
| NlaIII | CATG | 4 cut(s) | 118, 134, 270, 850 |
| PciSI | GCTCTTC | 1 cut(s) | 126 |
| PctI | GAATGC | 1 cut(s) | 764 |
| PfeI | GAWTC | 3 cut(s) | 90, 341, 605 |
| PfoI | TCCNGGA | 1 cut(s) | 802 |
| PkrI | GCNGC | 3 cut(s) | 520, 523, 583 |
| Psp6I | CCWGG | 2 cut(s) | 295, 802 |
| PspFI | CCCAGC | 1 cut(s) | 45 |
| PspGI | CCWGG | 2 cut(s) | 295, 802 |
| PsuI | RGATCY | 2 cut(s) | 100, 590 |
| SapI | GCTCTTC | 1 cut(s) | 126 |
| SaqAI | TTAA | 5 cut(s) | 78, 498, 509, 633, 878 |
| SatI | GCNGC | 3 cut(s) | 519, 522, 582 |
| Sau3AI | GATC | 5 cut(s) | 100, 308, 590, 616, 806 |
| ScrFI | CCNGG | 2 cut(s) | 297, 804 |
| SduI | GDGCHC | 1 cut(s) | 25 |
| SetI | ASST | 9 cut(s) | 304, 391, 411, 532, 577, 640, 912, 954, 965 |
| SfaNI | GCATC | 2 cut(s) | 223, 568 |
| SmlI | CTYRAG | 1 cut(s) | 913 |
| SmoI | CTYRAG | 1 cut(s) | 913 |
| Sse9I | AATT | 3 cut(s) | 75, 138, 513 |
| SsiI | CCGC | 1 cut(s) | 757 |
| SspMI | CTAG | 2 cut(s) | 146, 527 |
| StyD4I | CCNGG | 2 cut(s) | 295, 802 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaiI | ACGT | 1 cut(s) | 912 |
| TaqI | TCGA | 2 cut(s) | 366, 535 |
| TasI | AATT | 3 cut(s) | 75, 138, 513 |
| TfiI | GAWTC | 3 cut(s) | 90, 341, 605 |
| Tru1I | TTAA | 5 cut(s) | 78, 498, 509, 633, 878 |
| Tru9I | TTAA | 5 cut(s) | 78, 498, 509, 633, 878 |
| TseI | GCWGC | 3 cut(s) | 518, 521, 581 |
| TspDTI | ATGAA | 2 cut(s) | 103, 815 |
| XspI | CTAG | 2 cut(s) | 146, 527 |
| ZraI | GACGTC | 1 cut(s) | 910 |