Rorug03G0215200

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000231
Physical Location & Seq
Forward (+)
19478815 .. 19484619
5805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0215200.1

Sequence Viewer

Length: 2364 bp
ATGGCCGGAGACGGACAAGCGTCGACGTCGAACGCGTTCTCGTTCATATCGAAGGGGTGGAGGGAAGTGAAGGACTCGGCGGACGCGGATCTACAATTGATGAAGGACCGAGCCAACTCGTTCAAGAACTTGGCGACTTCCTTCGACCGCGAGCTCGAGAACTTGTTCAACTCGGCGACCGCAATCCGGTCGTCTTCGTCGCTGTCGCGGCCGACGGAGATTGACTTCGTGAAGAAGCTGCAGCCGAAGCTGGTGGAGATTCGGAGGGCGTACTCGTCGCCGGATTTCAGCAAGAAGGTGCTGGAGAAATGGACCCCGAGGTCGACGATTCGGATTGATTTGTCGGCGATAAAGAATGCTATAGTGTCGGAGGTGGAGGGCAGGGAAGGGATGGCGGAGTTTGATAGGATTAGGAGGAGGAGGAGTTTGAAGTTTAGTGAGTTTTGGGGAGAGTGGAAGAGAGATGGTGATGATGAGGAGAAACAGTCCAGTAGGGATTGGGAGCCAATTCGAGTGTTGAAGACGAGATTGAAAGAGTTTGAGAAGCGTGAATTTCTCGGTGGGTTTAAGAACAGTGAGTTTGTGGAGAAGGTCAAGTCCAGCTTGAAATCAGTTTACAAGGATTCTCAGGAGTCACAGGCTGTACCTCCACTGGATGCAGCGGAACTTTTGGCAAGTTTGGTTAGGCAATCTGAGCCATTTCTGGATCAACTTGGCATTAGAAAAGATGTATGTGAGAAATTAGTGGAAAGCTTGTATAGTAAACGCAAGAATTACTTTCTGTTGAACTCCCCTTCTTCCGGAGAGTCATCTGTTCTAGAGGGTGAAAACGTTAATGATGAATTAGATTTAAGGATAGCTTCTGTCCTGCAAAGTACAGGGCATTCTTACGATGGTGGATTTTGGACAGACCATGCAAAGCATGACCCATCAGACCAGAAACGGCATGTTGCTATAGTCACAACTGCTAGTCTTCCTTGGATGACAGGAACAGCAGTGAATCCACTTTTTCGAGCTGCGTATCTTGCTCAGACTGCAAAACAAAATGTTACCCTGTTAGTTCCATGGCTTTGCGCATCAGATCAAGAACTTGTGTATCCTAGCAATATCACTTTTACTTCACCAGAAGAGCAGGAAATTTATATCCGTAACTGGCTTGAGGAAAGGATTGGCTTTAAGGCTGACTTTAAGATCTCCTTTTATCCAGGGAAGTTTTCCAAAGAAAGGCGAAGCATTTTACCTGCTGGAGACACTTCTCAGTTCATTCCGTCCAAAGAGGCTGACATTGCTATCCTGGAAGAACCAGAACACCTGAATTGGTACCATCATGGCAGGCGATGGACCGATAAGTTTAACCATGTTGTTGGTGTTGTTCATACAAATTACTTGGAATATATCAAGAGAGAGAAGAATGGAGCTCTTCAAGCATTCTTTGTGAAGCACATAAACAATTGGGTTACAAGAGCATATTGCGACAAGGTTCTTCGCCTTTCAGCTGCCACACAGGATTTACCTAAGTCTGTGATCTGCAATGTTCATGGCGTGAATCCTAAGTTCTTAAAAATTGGAGAGAAGGTGGCTGCAGAAAAGGAAACTGGGGAGAAAGCATTCTCAAAAGGAGCATATTTCTTGGGAAAGATGGTCTGGGCGAAGGGATACCGCGAATTGATAGATTTGTTGGCAAAGCACAAGAGTGACCTTGATGGCTTCAAAGTGGATGTGTATGGGAATGGAGAGGATGCCAATGAAGTCCAGAGTACAGCTAAGAGTTTGGATTTGAATCTGAACTTTCTAAAAGGGAGGGACCATGCTGATGATTCTCTTCACGGGTACAAAGTCTTCATAAATCCCAGTGTTAGTGATGTGCTGTGCACGGCTACTGCTGAGGCGCTTGCCATGGGAAAATTTGTTATTTGTGCGGACCATCCATCAAATCAGTTTTTCAGATCATTTCCTAATTGCTTGACTTATGAAACATCTGAGGACTTTGTTGCCAAAGTAAAGGAAGCAATGGAAAATGACCCTCAGCCCCTTACTCCAGAGCAAAGATTTAATCTTTCATGGGAAGCAGCTACACAGAGATTCATGGAGTATTCTGAGATGGATAAAGTCCTGGATACGGAAAAGAATGGTGCAAGATCAAGCAGAGGTAAGGGAAAGGGGGTCTCAAAGTCTGCATCTATGCCTAGCTTATCAGGTATGGTTGATGGAGGATTGGCATTTGCCCATTATTGTCTCACCGGGAATGAATTCCTTAGATTATGCACTGGGGCAACCCCTGGAACCCGTGACTACGACAAGCAACATTGTAAAGATCTCCGTCTCTTGCCTCCTCAGGTTGAAAACCCTATTTATGGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

787

Amino Acids

89.07

Weight (kDa)

6.82

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_1 PF00534 541 - 675 2.6e-11 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 542 - 673 6.9e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
AatII GACGTC 1 cut(s) 29
Acc16I TGCGCA 1 cut(s) 1075
Acc36I ACCTGC 1 cut(s) 1249
Acc65I GGTACC 1 cut(s) 1320
AccB1I GGYRCC 1 cut(s) 1320
AccI GTMKAC 2 cut(s) 23, 323
AccII CGCG 5 cut(s) 35, 86, 150, 208, 1662
AccIII TCCGGA 1 cut(s) 800
AciI CCGC 9 cut(s) 80, 86, 148, 180, 208, 395, 662, 1660, 1919
AclI AACGTT 1 cut(s) 831
AclWI GGATC 2 cut(s) 96, 714
AcoI YGGCCR 2 cut(s) 3, 209
AcsI RAATTY 4 cut(s) 551, 1137, 1904, 2249
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 6 cut(s) 272, 645, 877, 1322, 1759, 1832
AfiI CCNNNNNNNGG 5 cut(s) 186, 800, 1224, 2119, 2354
AflIII ACRYGT 1 cut(s) 33
AjnI CCWGG 4 cut(s) 1204, 1293, 2112, 2278
AleI CACNNNNGTG 1 cut(s) 1692
Alw21I GWGCWC 3 cut(s) 156, 1420, 1874
Alw26I GTCTC 5 cut(s) 3, 1242, 2170, 2240, 2327
Alw44I GTGCAC 1 cut(s) 1870
AlwI GGATC 2 cut(s) 96, 714
Ama87I CYCGRG 2 cut(s) 155, 316
Aor13HI TCCGGA 1 cut(s) 800
AoxI GGCC 2 cut(s) 3, 209
ApaLI GTGCAC 1 cut(s) 1870
ApeKI GCWGC 7 cut(s) 238, 241, 659, 1016, 1496, 1580, 2069
ApoI RAATTY 4 cut(s) 551, 1137, 1904, 2249
Asp700I GAANNNNTTC 4 cut(s) 35, 164, 1607, 2249
Asp718I GGTACC 1 cut(s) 1320
AspLEI GCGC 2 cut(s) 1076, 1891
AspS9I GGNCC 5 cut(s) 106, 312, 1341, 1804, 1921
AsuC2I CCSGG 1 cut(s) 2242
AsuHPI GGTGA 4 cut(s) 479, 836, 1113, 2230
AvaI CYCGRG 2 cut(s) 155, 316
AvaII GGWCC 5 cut(s) 106, 312, 1341, 1804, 1921
AxyI CCTNAGG 1 cut(s) 2334
BaeGI GKGCMC 1 cut(s) 1874
BaeI ACNNNNGTAYC 2 cut(s) 1079, 1112
BanI GGYRCC 1 cut(s) 1320
BanII GRGCYC 2 cut(s) 156, 1420
BarI GAAGNNNNNNTAC 2 cut(s) 1823, 1855
BbsI GAAGAC 4 cut(s) 186, 527, 965, 1831
Bbv12I GWGCWC 3 cut(s) 156, 1420, 1874
BbvCI CCTCAGC 2 cut(s) 1884, 2025
BbvI GCAGC 7 cut(s) 225, 253, 671, 1003, 1483, 1567, 2081
BceAI ACGGC 2 cut(s) 959, 1890
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 4 cut(s) 1206, 1295, 2114, 2280
BciVI GTATCC 3 cut(s) 1107, 1649, 2110
BcnI CCSGG 1 cut(s) 2242
BcoDI GTCTC 5 cut(s) 3, 1242, 2170, 2240, 2327
BfaI CTAG 4 cut(s) 818, 969, 1101, 2187
BfmI CTRYAG 4 cut(s) 239, 360, 954, 1581
BfoI RGCGCY 1 cut(s) 1892
BfuAI ACCTGC 1 cut(s) 1249
BfuI GTATCC 3 cut(s) 1107, 1649, 2110
BglII AGATCT 2 cut(s) 1191, 2314
BisI GCNGC 8 cut(s) 209, 239, 242, 660, 1017, 1497, 1581, 2070
BlsI GCNGC 8 cut(s) 210, 240, 243, 661, 1018, 1498, 1582, 2071
Bme1390I CCNGG 5 cut(s) 1206, 1295, 2114, 2242, 2280
Bme18I GGWCC 5 cut(s) 106, 312, 1341, 1804, 1921
BmeT110I CYCGRG 2 cut(s) 155, 316
BmgT120I GGNCC 5 cut(s) 106, 312, 1341, 1804, 1921
BmiI GGNNCC 5 cut(s) 314, 504, 1322, 1805, 2284
BmrFI CCNGG 5 cut(s) 1206, 1295, 2114, 2242, 2280
BmrI ACTGGG 3 cut(s) 1605, 1845, 2277
BmsI GCATC 4 cut(s) 646, 1085, 1729, 2186
BmuI ACTGGG 3 cut(s) 1605, 1845, 2277
BoxI GACNNNNGTC 1 cut(s) 19
BpiI GAAGAC 4 cut(s) 186, 527, 965, 1831
BpmI CTGGAG 3 cut(s) 323, 1266, 2022
Bpu10I CCTNAGC 2 cut(s) 1884, 2025
BpuEI CTTGAG 1 cut(s) 1178
BpuMI CCSGG 1 cut(s) 2242
BsaBI GATNNNNATC 1 cut(s) 1779
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 2170
BsaJI CCNNGG 6 cut(s) 317, 977, 1064, 1205, 1896, 2278
BsaWI WCCGGW 2 cut(s) 186, 800
BsaXI ACNNNNNCTCC 6 cut(s) 409, 439, 470, 500, 1560, 1590
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 800, 1224, 2119, 2354
Bse1I ACTGG 6 cut(s) 489, 657, 1157, 1600, 1851, 2272
Bse21I CCTNAGG 1 cut(s) 2334
Bse3DI GCAATG 3 cut(s) 1284, 1537, 2016
Bse8I GATNNNNATC 1 cut(s) 1779
BseAI TCCGGA 1 cut(s) 800
BseBI CCWGG 4 cut(s) 1206, 1295, 2114, 2280
BseDI CCNNGG 6 cut(s) 317, 977, 1064, 1205, 1896, 2278
BseGI GGATG 6 cut(s) 396, 661, 987, 1723, 1744, 1924
BseJI GATNNNNATC 1 cut(s) 1779
BseLI CCNNNNNNNGG 5 cut(s) 186, 800, 1224, 2119, 2354
BseMI GCAATG 3 cut(s) 1284, 1537, 2016
BseMII CTCAG 9 cut(s) 641, 684, 1043, 1271, 1875, 1971, 2039, 2088, 2348
BseNI ACTGG 6 cut(s) 489, 657, 1157, 1600, 1851, 2272
BseRI GAGGAG 5 cut(s) 430, 433, 436, 491, 2322
BseSI GKGCMC 1 cut(s) 1874
BseX3I CGGCCG 1 cut(s) 209
BseXI GCAGC 7 cut(s) 225, 253, 671, 1003, 1483, 1567, 2081
Bsh1236I CGCG 5 cut(s) 35, 86, 150, 208, 1662
Bsh1285I CGRYCG 4 cut(s) 148, 180, 191, 212
BshFI GGCC 2 cut(s) 5, 211
BshNI GGYRCC 1 cut(s) 1320
BsiEI CGRYCG 4 cut(s) 148, 180, 191, 212
BsiHKAI GWGCWC 3 cut(s) 156, 1420, 1874
BsiHKCI CYCGRG 2 cut(s) 155, 316
BsiSI CCGG 5 cut(s) 6, 187, 281, 801, 2241
BslFI GGGAC 1 cut(s) 1817
BslI CCNNNNNNNGG 5 cut(s) 186, 800, 1224, 2119, 2354
BsmAI GTCTC 5 cut(s) 3, 1242, 2170, 2240, 2327
BsmBI CGTCTC 2 cut(s) 3, 2327
BsmFI GGGAC 1 cut(s) 1817
BsmI GAATGC 4 cut(s) 361, 883, 1427, 1607
BsnI GGCC 2 cut(s) 5, 211
Bso31I GGTCTC 1 cut(s) 2170
BsoBI CYCGRG 2 cut(s) 155, 316
Bsp1286I GDGCHC 3 cut(s) 156, 1420, 1874
Bsp13I TCCGGA 1 cut(s) 800
Bsp143I GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
Bsp19I CCATGG 2 cut(s) 1064, 1896
BspACI CCGC 9 cut(s) 80, 86, 148, 180, 208, 395, 662, 1660, 1919
BspANI GGCC 2 cut(s) 5, 211
BspCNI CTCAG 9 cut(s) 640, 685, 1042, 1270, 1876, 1972, 2038, 2089, 2347
BspEI TCCGGA 1 cut(s) 800
BspFNI CGCG 5 cut(s) 35, 86, 150, 208, 1662
BspLI GGNNCC 5 cut(s) 314, 504, 1322, 1805, 2284
BspMAI CTGCAG 2 cut(s) 243, 1585
BspMI ACCTGC 1 cut(s) 1249
BspPI GGATC 2 cut(s) 96, 714
BspQI GCTCTTC 2 cut(s) 1122, 1425
BspT107I GGYRCC 1 cut(s) 1320
BspTNI GGTCTC 1 cut(s) 2170
BsrDI GCAATG 3 cut(s) 1284, 1537, 2016
BsrI ACTGG 6 cut(s) 489, 657, 1157, 1600, 1851, 2272
BssECI CCNNGG 6 cut(s) 317, 977, 1064, 1205, 1896, 2278
BssMI GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 3 cut(s) 977, 1064, 1896
Bst2UI CCWGG 4 cut(s) 1206, 1295, 2114, 2280
Bst4CI ACNGT 2 cut(s) 486, 575
Bst6I CTCTTC 4 cut(s) 452, 1122, 1425, 1827
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 152, 1334, 1893
BstDSI CCRYGG 2 cut(s) 1064, 1896
BstF5I GGATG 6 cut(s) 396, 661, 987, 1723, 1744, 1924
BstFNI CGCG 5 cut(s) 35, 86, 150, 208, 1662
BstH2I RGCGCY 1 cut(s) 1892
BstHHI GCGC 2 cut(s) 1076, 1891
BstKTI GATC 8 cut(s) 91, 709, 1084, 1194, 1527, 1949, 2141, 2317
BstMAI GTCTC 5 cut(s) 3, 1242, 2170, 2240, 2327
BstMBI GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
BstMCI CGRYCG 4 cut(s) 148, 180, 191, 212
BstMWI GCNNNNNNNGC 7 cut(s) 208, 247, 694, 1025, 1034, 1286, 1424
BstNI CCWGG 4 cut(s) 1206, 1295, 2114, 2280
BstNSI RCATGY 1 cut(s) 950
BstPAI GACNNNNGTC 1 cut(s) 19
BstSCI CCNGG 5 cut(s) 1204, 1293, 2112, 2240, 2278
BstSFI CTRYAG 4 cut(s) 239, 360, 954, 1581
BstSLI GKGCMC 1 cut(s) 1874
BstUI CGCG 5 cut(s) 35, 86, 150, 208, 1662
BstV1I GCAGC 7 cut(s) 225, 253, 671, 1003, 1483, 1567, 2081
BstV2I GAAGAC 4 cut(s) 186, 527, 965, 1831
BstX2I RGATCY 3 cut(s) 88, 1191, 2314
BstXI CCANNNNNNTGG 1 cut(s) 1364
BstYI RGATCY 3 cut(s) 88, 1191, 2314
BstZI CGGCCG 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 2334
BsuI GTATCC 3 cut(s) 1107, 1649, 2110
BsuRI GGCC 2 cut(s) 5, 211
BtgI CCRYGG 2 cut(s) 1064, 1896
BtgZI GCGATG 1 cut(s) 1351
BtsCI GGATG 6 cut(s) 396, 661, 987, 1723, 1744, 1924
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 5 cut(s) 580, 650, 1002, 1858, 2265
BveI ACCTGC 1 cut(s) 1249
Cac8I GCNNGC 3 cut(s) 152, 1334, 1893
CfoI GCGC 2 cut(s) 1076, 1891
Cfr13I GGNCC 5 cut(s) 106, 312, 1341, 1804, 1921
CseI GACGC 2 cut(s) 9, 92
Csp6I GTAC 6 cut(s) 271, 644, 876, 1321, 1758, 1831
CviQI GTAC 6 cut(s) 271, 644, 876, 1321, 1758, 1831
DpnI GATC 8 cut(s) 90, 708, 1083, 1193, 1526, 1948, 2140, 2316
DpnII GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 3, 209
EagI CGGCCG 1 cut(s) 209
Eam1104I CTCTTC 4 cut(s) 452, 1122, 1425, 1827
EarI CTCTTC 4 cut(s) 452, 1122, 1425, 1827
EciI GGCGGA 2 cut(s) 95, 410
Ecl136II GAGCTC 2 cut(s) 154, 1418
EclXI CGGCCG 1 cut(s) 209
Eco130I CCWWGG 3 cut(s) 977, 1064, 1896
Eco24I GRGCYC 2 cut(s) 156, 1420
Eco31I GGTCTC 1 cut(s) 2170
Eco47I GGWCC 5 cut(s) 106, 312, 1341, 1804, 1921
Eco52I CGGCCG 1 cut(s) 209
Eco53kI GAGCTC 2 cut(s) 154, 1418
Eco81I CCTNAGG 1 cut(s) 2334
Eco88I CYCGRG 2 cut(s) 155, 316
EcoICRI GAGCTC 2 cut(s) 154, 1418
EcoRI GAATTC 1 cut(s) 2249
EcoRII CCWGG 4 cut(s) 1204, 1293, 2112, 2278
EcoT14I CCWWGG 3 cut(s) 977, 1064, 1896
EcoT38I GRGCYC 2 cut(s) 156, 1420
ErhI CCWWGG 3 cut(s) 977, 1064, 1896
Esp3I CGTCTC 2 cut(s) 3, 2327
FaqI GGGAC 1 cut(s) 1817
FblI GTMKAC 2 cut(s) 23, 323
Fnu4HI GCNGC 8 cut(s) 209, 239, 242, 660, 1017, 1497, 1581, 2070
FokI GGATG 6 cut(s) 403, 668, 994, 1730, 1751, 1911
FriOI GRGCYC 2 cut(s) 156, 1420
Fsp4HI GCNGC 8 cut(s) 209, 239, 242, 660, 1017, 1497, 1581, 2070
FspBI CTAG 4 cut(s) 818, 969, 1101, 2187
FspI TGCGCA 1 cut(s) 1075
GlaI GCGC 2 cut(s) 1075, 1890
GluI GCNGC 8 cut(s) 209, 239, 242, 660, 1017, 1497, 1581, 2070
GsuI CTGGAG 3 cut(s) 323, 1266, 2022
HaeII RGCGCY 1 cut(s) 1892
HaeIII GGCC 2 cut(s) 5, 211
HapII CCGG 5 cut(s) 6, 187, 281, 801, 2241
HgaI GACGC 2 cut(s) 9, 92
HhaI GCGC 2 cut(s) 1076, 1891
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 2 cut(s) 1074, 1889
HinP1I GCGC 2 cut(s) 1074, 1889
HincII GTYRAC 2 cut(s) 24, 324
HindII GTYRAC 2 cut(s) 24, 324
HindIII AAGCTT 1 cut(s) 751
HpaII CCGG 5 cut(s) 6, 187, 281, 801, 2241
HphI GGTGA 4 cut(s) 479, 836, 1113, 2230
Hpy166II GTNNAC 5 cut(s) 24, 324, 616, 764, 1872
Hpy8I GTNNAC 5 cut(s) 24, 324, 616, 764, 1872
Hpy99I CGWCG 7 cut(s) 25, 28, 31, 202, 217, 280, 328
HpyCH4III ACNGT 2 cut(s) 486, 575
HpyCH4IV ACGT 2 cut(s) 26, 831
HpyF10VI GCNNNNNNNGC 7 cut(s) 208, 247, 694, 1025, 1034, 1286, 1424
HpySE526I ACGT 2 cut(s) 26, 831
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 2 cut(s) 1074, 1889
Kpn2I TCCGGA 1 cut(s) 800
KpnI GGTACC 1 cut(s) 1324
Kzo9I GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
LguI GCTCTTC 2 cut(s) 1122, 1425
LmnI GCTCC 3 cut(s) 502, 1415, 1619
Lsp1109I GCAGC 7 cut(s) 225, 253, 671, 1003, 1483, 1567, 2081
LweI GCATC 4 cut(s) 646, 1085, 1729, 2186
MaeI CTAG 4 cut(s) 818, 969, 1101, 2187
MaeII ACGT 2 cut(s) 26, 831
MaeIII GTNAC 7 cut(s) 633, 958, 1048, 1148, 1456, 1694, 2288
MalI GATC 8 cut(s) 90, 708, 1083, 1193, 1526, 1948, 2140, 2316
MboI GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
MfeI CAATTG 2 cut(s) 95, 1450
MflI RGATCY 3 cut(s) 88, 1191, 2314
MhlI GDGCHC 3 cut(s) 156, 1420, 1874
MluI ACGCGT 1 cut(s) 33
MlyI GAGTC 3 cut(s) 68, 641, 815
MmeI TCCRAC 1 cut(s) 348
MroI TCCGGA 1 cut(s) 800
MroXI GAANNNNTTC 4 cut(s) 35, 164, 1607, 2249
MseI TTAA 8 cut(s) 567, 834, 851, 1176, 1188, 1353, 1559, 2052
MslI CAYNNNNRTG 2 cut(s) 1692, 1812
MspA1I CMGCKG 2 cut(s) 662, 1496
MspI CCGG 5 cut(s) 6, 187, 281, 801, 2241
MspR9I CCNGG 5 cut(s) 1206, 1295, 2114, 2242, 2280
MunI CAATTG 2 cut(s) 95, 1450
Mva1269I GAATGC 4 cut(s) 361, 883, 1427, 1607
MvaI CCWGG 4 cut(s) 1206, 1295, 2114, 2280
MvnI CGCG 5 cut(s) 35, 86, 150, 208, 1662
MwoI GCNNNNNNNGC 7 cut(s) 208, 247, 694, 1025, 1034, 1286, 1424
NciI CCSGG 1 cut(s) 2242
NcoI CCATGG 2 cut(s) 1064, 1896
NdeII GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
NlaIV GGNNCC 5 cut(s) 314, 504, 1322, 1805, 2284
NmeAIII GCCGAG 2 cut(s) 56, 152
NmuCI GTSAC 4 cut(s) 633, 958, 1694, 2288
NsbI TGCGCA 1 cut(s) 1075
NspI RCATGY 1 cut(s) 950
OliI CACNNNNGTG 1 cut(s) 1692
PaeR7I CTCGAG 1 cut(s) 155
PciSI GCTCTTC 2 cut(s) 1122, 1425
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 47
PctI GAATGC 4 cut(s) 361, 883, 1427, 1607
PdmI GAANNNNTTC 4 cut(s) 35, 164, 1607, 2249
PfeI GAWTC 8 cut(s) 259, 328, 623, 1000, 1546, 1780, 1817, 2082
PfoI TCCNGGA 2 cut(s) 1293, 2112
PkrI GCNGC 8 cut(s) 210, 240, 243, 661, 1018, 1498, 1582, 2071
PleI GAGTC 3 cut(s) 68, 640, 814
PpsI GAGTC 3 cut(s) 68, 640, 814
PshAI GACNNNNGTC 1 cut(s) 19
Psp124BI GAGCTC 2 cut(s) 156, 1420
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 4 cut(s) 1204, 1293, 2112, 2278
PspGI CCWGG 4 cut(s) 1204, 1293, 2112, 2278
PspN4I GGNNCC 5 cut(s) 314, 504, 1322, 1805, 2284
PspPI GGNCC 5 cut(s) 106, 312, 1341, 1804, 1921
PstI CTGCAG 2 cut(s) 243, 1585
PsuI RGATCY 3 cut(s) 88, 1191, 2314
PvuII CAGCTG 1 cut(s) 1496
RsaI GTAC 6 cut(s) 272, 645, 877, 1322, 1759, 1832
RsaNI GTAC 6 cut(s) 271, 644, 876, 1321, 1758, 1831
RseI CAYNNNNRTG 2 cut(s) 1692, 1812
SacI GAGCTC 2 cut(s) 156, 1420
SalI GTCGAC 2 cut(s) 22, 322
SapI GCTCTTC 2 cut(s) 1122, 1425
SaqAI TTAA 8 cut(s) 567, 834, 851, 1176, 1188, 1353, 1559, 2052
SatI GCNGC 8 cut(s) 209, 239, 242, 660, 1017, 1497, 1581, 2070
Sau3AI GATC 8 cut(s) 88, 706, 1081, 1191, 1524, 1946, 2138, 2314
Sau96I GGNCC 5 cut(s) 106, 312, 1341, 1804, 1921
SchI GAGTC 3 cut(s) 68, 641, 815
ScrFI CCNGG 5 cut(s) 1206, 1295, 2114, 2242, 2280
SduI GDGCHC 3 cut(s) 156, 1420, 1874
SfaNI GCATC 4 cut(s) 646, 1085, 1729, 2186
SfcI CTRYAG 4 cut(s) 239, 360, 954, 1581
Sfr274I CTCGAG 1 cut(s) 155
SgrDI CGTCGACG 1 cut(s) 22
SinI GGWCC 5 cut(s) 106, 312, 1341, 1804, 1921
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 1692, 1812
SmlI CTYRAG 2 cut(s) 155, 1157
SmoI CTYRAG 2 cut(s) 155, 1157
SsiI CCGC 9 cut(s) 80, 86, 148, 180, 208, 395, 662, 1660, 1919
SspMI CTAG 4 cut(s) 818, 969, 1101, 2187
SstI GAGCTC 2 cut(s) 156, 1420
StyD4I CCNGG 5 cut(s) 1204, 1293, 2112, 2240, 2278
StyI CCWWGG 3 cut(s) 977, 1064, 1896
TaaI ACNGT 2 cut(s) 486, 575
TaiI ACGT 2 cut(s) 29, 834
TaqI TCGA 8 cut(s) 23, 29, 50, 144, 156, 323, 511, 1012
TaqII GACCGA 2 cut(s) 123, 1358
TatI WGTACW 2 cut(s) 875, 1757
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 8 cut(s) 259, 328, 623, 1000, 1546, 1780, 1817, 2082
Tru1I TTAA 8 cut(s) 567, 834, 851, 1176, 1188, 1353, 1559, 2052
Tru9I TTAA 8 cut(s) 567, 834, 851, 1176, 1188, 1353, 1559, 2052
TscAI CASTG 5 cut(s) 580, 657, 1002, 1858, 2272
TseFI GTSAC 4 cut(s) 633, 958, 1694, 2288
TseI GCWGC 7 cut(s) 238, 241, 659, 1016, 1496, 1580, 2069
Tsp45I GTSAC 4 cut(s) 633, 958, 1694, 2288
TspGWI ACGGA 6 cut(s) 27, 230, 1136, 1257, 2135, 2309
TspRI CASTG 5 cut(s) 580, 657, 1002, 1858, 2272
VneI GTGCAC 1 cut(s) 1870
VpaK11BI GGWCC 5 cut(s) 106, 312, 1341, 1804, 1921
XapI RAATTY 4 cut(s) 551, 1137, 1904, 2249
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 1 cut(s) 950
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 2 cut(s) 23, 323
XmnI GAANNNNTTC 4 cut(s) 35, 164, 1607, 2249
XspI CTAG 4 cut(s) 818, 969, 1101, 2187
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.