Rorug03G0288500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000231
Physical Location & Seq
Forward (+)
29326361 .. 29327322
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0288500.1

Sequence Viewer

Length: 651 bp
ATGATATCACTGAACTGGAAGTACGGCAAAAGCCTCCGTGTCACTGATTTTATCCTTGCTGAGGGTGAGTTGCAAGCTATGAATTTTATAAGCAAGGATTGTTACAATGAGAGCGGCTATAATGTGGAGAGCAACGTTCCTTGGCTCCGTTGGAATCTTCCTTTCAGCATTTCCGGTTCCAAAAAAAGCTATGCCTTCCTTGTGCGAGATGGCTACTTTAACTTCAGCGGTAAGAGAAGTTTCAAAGAGCTCAAGAACATGGATCAGATGCCAATGATCGTTAATTGGCAGATTGGAAATGAGACATGCGAGGTAGCTAAAAAGAATGCTGTGGATTATGCATGCAAGGCAAATTCCAAATGTGTCAACCGGACCAAGGGCCCATACCCTGGTTACTATTGCCAGTGCTTACGAGGTTACGAAGGAAACCCATACATCGGTTGCCGAGGTGATCTCTTTGCCGATGCAGATATATTGACGAGTGTTTGGCTGAAATTAACCCATGCGGGAATGAAACGTGCCAAAATTCACCTGCAAGTTACTCTTGTCAATGTAATAATTAAAGGGTTCAAAAATGAAAGTCCTTTCAAGTGCATTGCTCATCCCACGGCAAACAACACTCCTCTGAAAATTTCATTGGGTATGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.52

Weight (kDa)

9.26

Isoelectric Point (pI)

25.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AarI CACCTGC 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 3 cut(s) 114, 228, 506
AclI AACGTT 1 cut(s) 135
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 4 cut(s) 82, 352, 525, 630
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 4 cut(s) 61, 376, 389, 437
AgsI TTSAA 3 cut(s) 244, 571, 589
AjnI CCWGG 1 cut(s) 388
AjuI GAANNNNNNNTTGG 1 cut(s) 620
AluBI AGCT 4 cut(s) 77, 189, 250, 317
AluI AGCT 4 cut(s) 77, 189, 250, 317
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 270
AoxI GGCC 1 cut(s) 379
ApaI GGGCCC 1 cut(s) 383
ApoI RAATTY 4 cut(s) 82, 352, 525, 630
AspS9I GGNCC 3 cut(s) 372, 379, 380
AsuHPI GGTGA 3 cut(s) 77, 461, 521
AvaII GGWCC 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 252, 383
Bbv12I GWGCWC 1 cut(s) 252
BbvCI CCTCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 203
BceAI ACGGC 2 cut(s) 40, 624
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 649
BfuAI ACCTGC 1 cut(s) 540
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 3 cut(s) 372, 379, 380
BmiI GGNNCC 3 cut(s) 146, 178, 381
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 2 cut(s) 258, 454
BplI GAGNNNNNCTC 2 cut(s) 438, 470
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 5 cut(s) 140, 375, 388, 445, 606
BsaWI WCCGGW 2 cut(s) 173, 369
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 376, 389, 437
Bse1I ACTGG 2 cut(s) 20, 403
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 5 cut(s) 140, 375, 388, 445, 606
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 4 cut(s) 61, 376, 389, 437
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 20, 403
BseRI GAGGAG 1 cut(s) 612
BseSI GKGCMC 1 cut(s) 383
BshFI GGCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 174, 370
BslI CCNNNNNNNGG 4 cut(s) 61, 376, 389, 437
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 1 cut(s) 381
Bsp120I GGGCCC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 252, 383
Bsp143I GATC 3 cut(s) 262, 276, 451
BspACI CCGC 3 cut(s) 114, 228, 506
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 3 cut(s) 146, 178, 381
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 2 cut(s) 20, 403
BssECI CCNNGG 5 cut(s) 140, 375, 388, 445, 606
BssMI GATC 3 cut(s) 262, 276, 451
BssT1I CCWWGG 2 cut(s) 140, 375
Bst2UI CCWGG 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 75, 343
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 3 cut(s) 265, 279, 454
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 262, 276, 451
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 2 cut(s) 309, 345
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 3 cut(s) 8, 42, 410
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 2 cut(s) 75, 343
Cfr13I GGNCC 3 cut(s) 372, 379, 380
Csp6I GTAC 1 cut(s) 22
CviAII CATG 4 cut(s) 259, 306, 342, 503
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 60
DpnI GATC 3 cut(s) 264, 278, 453
DpnII GATC 3 cut(s) 262, 276, 451
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 140, 375
Eco24I GRGCYC 2 cut(s) 252, 383
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 140, 375
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 252, 383
ErhI CCWWGG 2 cut(s) 140, 375
FaeI CATG 4 cut(s) 262, 309, 345, 506
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FatI CATG 4 cut(s) 258, 305, 341, 502
FauI CCCGC 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 2 cut(s) 252, 383
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 649
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 381
HapII CCGG 2 cut(s) 174, 370
Hin1II CATG 4 cut(s) 262, 309, 345, 506
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 154
HpaII CCGG 2 cut(s) 174, 370
HphI GGTGA 3 cut(s) 77, 461, 521
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 2 cut(s) 267, 627
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 205, 416
HpyCH4IV ACGT 2 cut(s) 135, 517
HpyCH4V TGCA 6 cut(s) 73, 341, 345, 467, 535, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 2 cut(s) 135, 517
Hsp92II CATG 4 cut(s) 262, 309, 345, 506
Kzo9I GATC 3 cut(s) 262, 276, 451
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 6 cut(s) 187, 375, 383, 402, 416, 545
LweI GCATC 2 cut(s) 258, 454
MaeI CTAG 1 cut(s) 649
MaeII ACGT 2 cut(s) 135, 517
MaeIII GTNAC 5 cut(s) 40, 101, 392, 416, 538
MalI GATC 3 cut(s) 264, 278, 453
MbiI CCGCTC 1 cut(s) 114
MboI GATC 3 cut(s) 262, 276, 451
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 252, 383
MluCI AATT 7 cut(s) 82, 283, 352, 494, 525, 558, 630
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 6 cut(s) 44, 55, 304, 407, 440, 633
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 4 cut(s) 219, 282, 497, 561
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 174, 370
MspR9I CCNGG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 3 cut(s) 262, 276, 451
NlaIII CATG 4 cut(s) 262, 309, 345, 506
NlaIV GGNNCC 3 cut(s) 146, 178, 381
NmeAIII GCCGAG 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 2 cut(s) 309, 345
PaeI GCATGC 1 cut(s) 345
PaqCI CACCTGC 1 cut(s) 540
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 146, 178, 381
PspOMI GGGCCC 1 cut(s) 379
PspPI GGNCC 3 cut(s) 372, 379, 380
PsrI GAACNNNNNNTAC 1 cut(s) 37
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 219, 282, 497, 561
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 3 cut(s) 262, 276, 451
Sau96I GGNCC 3 cut(s) 372, 379, 380
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 2 cut(s) 252, 383
SfaNI GCATC 2 cut(s) 258, 454
SinI GGWCC 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SphI GCATGC 1 cut(s) 345
Sse9I AATT 7 cut(s) 82, 283, 352, 494, 525, 558, 630
SsiI CCGC 3 cut(s) 114, 228, 506
SspMI CTAG 1 cut(s) 649
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 2 cut(s) 140, 375
TaiI ACGT 2 cut(s) 138, 520
TasI AATT 7 cut(s) 82, 283, 352, 494, 525, 558, 630
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 4 cut(s) 219, 282, 497, 561
Tru9I TTAA 4 cut(s) 219, 282, 497, 561
TscAI CASTG 3 cut(s) 15, 49, 410
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 95, 527, 591, 624
TspGWI ACGGA 2 cut(s) 26, 137
TspRI CASTG 3 cut(s) 15, 49, 410
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 4 cut(s) 82, 352, 525, 630
XceI RCATGY 2 cut(s) 309, 345
XspI CTAG 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.