Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

33192684 .. 33202103

Gene Structure 9420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0298500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGACGATGATGGCGAACTTGAATTCGAAATTAGGGTTGTTCCGATTAGGGACACGGTGGCTGAGCAGTACTGGGAGTGGACCACGGAAGAGGGTCGCGGCGGTTTGGGGCAATGGTGACTACGGGAGGCTCGGATTAGGGAGCTTGGACTCTCAGTGGAGCCCTACCCTTCTGCTCTGCTCTGCATTTCAGGACCAAAGCCTTGAAGCCGTTGCTTGCGGCGGAGCTCACACTCTGTTCTTGACCCAAGCTGGCCGGGTTTTCGCCACCGGCCTAAATGATTTCGGACAGCTTGGGGCCTCCACTGATGTGCATTATGCTACTGAGCCGGTGGAGGTATCGGGAATCAACAAGCCAGTTGTGCAAATTTCCGCTGGATATTATCATTCTTGTGCTGTTACAGAAGATGGAGAGTTATACATGTGGGGGAAGAACTCATATGGGCAGCTTGGCCTTGGAAAGAGAGGAGCAAAAACAGTTCATGTACCAACAAAAGTTGAATGCTTGGCTGGAATCACCATTAGGATGGTAGCTTTGGGATCAGAGCACTCAGTGGCTGTTACTGATGGAGGTGAGTCCTTAAGTTGGGGAGGAGGTTCTGGAAGACTTGGTCATGGTCCTGAATCAGGCATTTTAGGAATTTTCAAAAGTACCAGTGAATATACACCAAGGCTTATCAAGAAACTTGAGGGGACCAAAGTCAAAAAAGTTGCTGCTGGATTGCTGCATTCAGCATGCGTTGACGAAAATGGATCTGTATTCGTATTTGGTGAAAGAGCAGTAGATAGAATGGGGAGTTTAAAGGGGAAGAATGGAACTGCACCGTCCATGATCAGCAGACTGCCCTGCTCAGAAGAAGTTTCATGCGGTGGCTATCACACATGCATCATAACAAGTGGTGGAGAACTCTACAGTTGGGGTTCAAATGAAAATGGTTGCCTTGGTATTGGTACTACTGATGTACTTCATCTGCCGGAAAGAGTTCAAGGTCCATTCTTGAAATCTGCAGTTATCAAGGTATCTTGTGGTTGGAAGCATACAGCAGCAATTTCTGAAGGCAATATCTTCACATGGGGTTGGGGAGGTTCACATGGAACATTTTCTGAAGAAGGGCATTCTTCTGGAGGACAACTGGGTCAGGGAACTGATGTTGACTACATAAAACCTACGAGGGTCAAGTTTGGGGAGAATTTGAAAGCTTTACAGATATCATGTGGGTTCAATCACACTGGTGCCATACTAGAATACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

417

Amino Acids

43.94

Weight (kDa)

7.59

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	34 - 410	4.9e-86	RCC1-like domain
RCC1	PF00415	36 - 81	2e-09	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	70 - 97	9.5e-09	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	85 - 133	2e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	120 - 149	4.6e-15	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	136 - 187	6.4e-15	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	194 - 247	6.6e-07	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	287 - 313	8.2e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	301 - 350	1.7e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	372 - 413	1.8e-07	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1134
AccB1I	GGYRCC	1 cut(s)	1232
AccII	CGCG	1 cut(s)	98
AciI	CCGC	6 cut(s)	98, 101, 219, 222, 372, 867
AclWI	GGATC	2 cut(s)	547, 760
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	4 cut(s)	22, 366, 639, 1189
AcuI	CTGAAG	2 cut(s)	1074, 1125
AdeI	CACNNNGTG	1 cut(s)	553
AfaI	GTAC	5 cut(s)	70, 486, 652, 952, 963
AfiI	CCNNNNNNNGG	2 cut(s)	585, 626
AflII	CTTAAG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	9 cut(s)	22, 206, 500, 646, 924, 986, 1000, 1195, 1222
AleI	CACNNNNGTG	2 cut(s)	308, 1230
AluBI	AGCT	7 cut(s)	144, 227, 251, 292, 448, 533, 1199
AluI	AGCT	7 cut(s)	144, 227, 251, 292, 448, 533, 1199
Alw21I	GWGCWC	2 cut(s)	229, 549
AlwI	GGATC	2 cut(s)	547, 760
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	4 cut(s)	253, 271, 297, 451
ApeKI	GCWGC	4 cut(s)	445, 713, 724, 1043
ApoI	RAATTY	4 cut(s)	22, 366, 639, 1189
Asp700I	GAANNNNTTC	2 cut(s)	981, 1099
AspS9I	GGNCC	6 cut(s)	80, 193, 297, 617, 693, 989
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	128, 508, 584, 782
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	5 cut(s)	80, 193, 617, 693, 989
BanI	GGYRCC	1 cut(s)	1232
BanII	GRGCYC	2 cut(s)	164, 229
BbsI	GAAGAC	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	229, 549
BbvI	GCAGC	4 cut(s)	457, 700, 711, 1055
BccI	CCATC	4 cut(s)	4, 401, 520, 560
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	831
BcnI	CCSGG	1 cut(s)	257
BfaI	CTAG	1 cut(s)	1241
BfmI	CTRYAG	2 cut(s)	910, 1005
BfrI	CTTAAG	1 cut(s)	580
BisI	GCNGC	6 cut(s)	99, 220, 446, 714, 725, 1044
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	6 cut(s)	100, 221, 447, 715, 726, 1045
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	5 cut(s)	80, 193, 617, 693, 989
BmgT120I	GGNCC	6 cut(s)	80, 193, 297, 617, 693, 989
BmiI	GGNNCC	4 cut(s)	161, 298, 694, 1234
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	2 cut(s)	81, 1142
BmsI	GCATC	1 cut(s)	894
BmuI	ACTGGG	2 cut(s)	81, 1142
BoxI	GACNNNNGTC	1 cut(s)	698
BpiI	GAAGAC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	1143
Bpu1102I	GCTNAGC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	83, 454, 668, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	585, 626
Bse118I	RCCGGY	2 cut(s)	269, 328
Bse1I	ACTGG	5 cut(s)	76, 356, 654, 1137, 1234
Bse3DI	GCAATG	1 cut(s)	118
BseDI	CCNNGG	4 cut(s)	83, 454, 668, 940
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	585, 626
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	5 cut(s)	53, 167, 315, 564, 864
BseNI	ACTGG	5 cut(s)	76, 356, 654, 1137, 1234
BseRI	GAGGAG	2 cut(s)	480, 606
BseXI	GCAGC	4 cut(s)	457, 700, 711, 1055
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	4 cut(s)	255, 273, 299, 453
BshNI	GGYRCC	1 cut(s)	1232
BsiHKAI	GWGCWC	2 cut(s)	229, 549
BsiSI	CCGG	4 cut(s)	256, 270, 329, 974
BslFI	GGGAC	2 cut(s)	64, 706
BslI	CCNNNNNNNGG	2 cut(s)	585, 626
BsmFI	GGGAC	2 cut(s)	64, 706
BsmI	GAATGC	3 cut(s)	506, 727, 1114
BsnI	GGCC	4 cut(s)	255, 273, 299, 453
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	3 cut(s)	164, 229, 549
Bsp143I	GATC	3 cut(s)	539, 752, 831
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	6 cut(s)	98, 101, 219, 222, 372, 867
BspANI	GGCC	4 cut(s)	255, 273, 299, 453
BspCNI	CTCAG	5 cut(s)	54, 166, 316, 563, 863
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	161, 298, 694, 1234
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	2 cut(s)	547, 760
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	1232
BspTI	CTTAAG	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	118
BsrFI	RCCGGY	2 cut(s)	269, 328
BsrI	ACTGG	5 cut(s)	76, 356, 654, 1137, 1234
BssAI	RCCGGY	2 cut(s)	269, 328
BssECI	CCNNGG	4 cut(s)	83, 454, 668, 940
BssMI	GATC	3 cut(s)	539, 752, 831
BssT1I	CCWWGG	3 cut(s)	454, 668, 940
Bst4CI	ACNGT	4 cut(s)	57, 478, 825, 914
Bst6I	CTCTTC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	580
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	217, 253, 736
BstDEI	CTNAG	5 cut(s)	62, 153, 324, 550, 850
BstDSI	CCRYGG	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	542, 755, 834
BstMBI	GATC	3 cut(s)	539, 752, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	3 cut(s)	424, 738, 885
BstPAI	GACNNNNGTC	1 cut(s)	698
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	910, 1005
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	457, 700, 711, 1055
BstV2I	GAAGAC	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	752
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	4 cut(s)	255, 273, 299, 453
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	5 cut(s)	161, 303, 558, 661, 1227
Cac8I	GCNNGC	3 cut(s)	217, 253, 736
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr10I	RCCGGY	2 cut(s)	269, 328
Cfr13I	GGNCC	6 cut(s)	80, 193, 297, 617, 693, 989
Csp6I	GTAC	5 cut(s)	69, 485, 651, 951, 962
CviQI	GTAC	5 cut(s)	69, 485, 651, 951, 962
DdeI	CTNAG	5 cut(s)	62, 153, 324, 550, 850
DpnI	GATC	3 cut(s)	541, 754, 833
DpnII	GATC	3 cut(s)	539, 752, 831
DraI	TTTAAA	1 cut(s)	801
DraIII	CACNNNGTG	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	1134
DseDI	GACNNNNNNGTC	1 cut(s)	1134
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	3 cut(s)	454, 668, 940
Eco24I	GRGCYC	2 cut(s)	164, 229
Eco32I	GATATC	1 cut(s)	1209
Eco47I	GGWCC	5 cut(s)	80, 193, 617, 693, 989
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	1074, 1125
EcoICRI	GAGCTC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	1209
EcoT14I	CCWWGG	3 cut(s)	454, 668, 940
EcoT22I	ATGCAT	1 cut(s)	887
EcoT38I	GRGCYC	2 cut(s)	164, 229
ErhI	CCWWGG	3 cut(s)	454, 668, 940
FaqI	GGGAC	2 cut(s)	64, 706
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	831
Fnu4HI	GCNGC	6 cut(s)	99, 220, 446, 714, 725, 1044
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	2 cut(s)	164, 229
Fsp4HI	GCNGC	6 cut(s)	99, 220, 446, 714, 725, 1044
FspBI	CTAG	1 cut(s)	1241
GluI	GCNGC	6 cut(s)	99, 220, 446, 714, 725, 1044
GsuI	CTGGAG	1 cut(s)	1143
HaeIII	GGCC	4 cut(s)	255, 273, 299, 453
HapII	CCGG	4 cut(s)	256, 270, 329, 974
HincII	GTYRAC	2 cut(s)	742, 1153
HindII	GTYRAC	2 cut(s)	742, 1153
HindIII	AAGCTT	1 cut(s)	1197
HinfI	GANTC	5 cut(s)	149, 345, 513, 575, 623
HpaII	CCGG	4 cut(s)	256, 270, 329, 974
HphI	GGTGA	4 cut(s)	128, 508, 584, 782
Hpy166II	GTNNAC	4 cut(s)	80, 742, 1088, 1153
Hpy188I	TCNGA	7 cut(s)	44, 134, 287, 544, 853, 1054, 1105
Hpy188III	TCNNGA	8 cut(s)	191, 241, 342, 600, 620, 679, 997, 1122
Hpy8I	GTNNAC	4 cut(s)	80, 742, 1088, 1153
HpyAV	CCTTC	3 cut(s)	179, 1049, 1103
HpyCH4III	ACNGT	4 cut(s)	57, 478, 825, 914
HpyCH4V	TGCA	7 cut(s)	185, 313, 364, 727, 821, 885, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	5 cut(s)	62, 153, 324, 550, 850
Ksp22I	TGATCA	1 cut(s)	831
Kzo9I	GATC	3 cut(s)	539, 752, 831
LmnI	GCTCC	4 cut(s)	141, 159, 224, 467
Lsp1109I	GCAGC	4 cut(s)	457, 700, 711, 1055
LweI	GCATC	1 cut(s)	894
MaeI	CTAG	1 cut(s)	1241
MaeIII	GTNAC	3 cut(s)	116, 397, 559
MalI	GATC	3 cut(s)	541, 754, 833
MboI	GATC	3 cut(s)	539, 752, 831
MboII	GAAGA	9 cut(s)	100, 416, 442, 615, 820, 866, 1057, 1110, 1118
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	3 cut(s)	164, 229, 549
MluCI	AATT	6 cut(s)	22, 29, 366, 639, 1047, 1189
MlyI	GAGTC	2 cut(s)	143, 584
MmeI	TCCRAC	1 cut(s)	1010
Mph1103I	ATGCAT	1 cut(s)	887
MroXI	GAANNNNTTC	2 cut(s)	981, 1099
MseI	TTAA	2 cut(s)	581, 800
MslI	CAYNNNNRTG	4 cut(s)	308, 390, 524, 1230
MspA1I	CMGCKG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	580
MspI	CCGG	4 cut(s)	256, 270, 329, 974
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	3 cut(s)	506, 727, 1114
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	3 cut(s)	539, 752, 831
NlaIV	GGNNCC	4 cut(s)	161, 298, 694, 1234
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	887
NspI	RCATGY	3 cut(s)	424, 738, 885
NspV	TTCGAA	1 cut(s)	26
OliI	CACNNNNGTG	2 cut(s)	308, 1230
PaeI	GCATGC	1 cut(s)	738
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	3 cut(s)	506, 727, 1114
PdmI	GAANNNNTTC	2 cut(s)	981, 1099
PfeI	GAWTC	3 cut(s)	345, 513, 623
PflFI	GACNNNGTC	1 cut(s)	609
PkrI	GCNGC	6 cut(s)	100, 221, 447, 715, 726, 1045
PleI	GAGTC	2 cut(s)	143, 583
PpsI	GAGTC	2 cut(s)	143, 583
PscI	ACATGT	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	161, 298, 694, 1234
PspPI	GGNCC	6 cut(s)	80, 193, 297, 617, 693, 989
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	752
PsyI	GACNNNGTC	1 cut(s)	609
RsaI	GTAC	5 cut(s)	70, 486, 652, 952, 963
RsaNI	GTAC	5 cut(s)	69, 485, 651, 951, 962
RseI	CAYNNNNRTG	4 cut(s)	308, 390, 524, 1230
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	581, 800
SatI	GCNGC	6 cut(s)	99, 220, 446, 714, 725, 1044
Sau3AI	GATC	3 cut(s)	539, 752, 831
Sau96I	GGNCC	6 cut(s)	80, 193, 297, 617, 693, 989
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	2 cut(s)	143, 584
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	3 cut(s)	164, 229, 549
SfaNI	GCATC	1 cut(s)	894
SfcI	CTRYAG	2 cut(s)	910, 1005
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	5 cut(s)	80, 193, 617, 693, 989
SmiMI	CAYNNNNRTG	4 cut(s)	308, 390, 524, 1230
SmlI	CTYRAG	2 cut(s)	580, 686
SmoI	CTYRAG	2 cut(s)	580, 686
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	6 cut(s)	22, 29, 366, 639, 1047, 1189
SsiI	CCGC	6 cut(s)	98, 101, 219, 222, 372, 867
SspMI	CTAG	1 cut(s)	1241
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	3 cut(s)	454, 668, 940
TaaI	ACNGT	4 cut(s)	57, 478, 825, 914
TaqI	TCGA	1 cut(s)	26
TasI	AATT	6 cut(s)	22, 29, 366, 639, 1047, 1189
TatI	WGTACW	2 cut(s)	68, 961
TauI	GCSGC	2 cut(s)	101, 222
TfiI	GAWTC	3 cut(s)	345, 513, 623
Tru1I	TTAA	2 cut(s)	581, 800
Tru9I	TTAA	2 cut(s)	581, 800
TscAI	CASTG	5 cut(s)	161, 310, 558, 661, 1234
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	4 cut(s)	445, 713, 724, 1043
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	470, 852, 942, 956
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	5 cut(s)	161, 310, 558, 661, 1234
Tth111I	GACNNNGTC	1 cut(s)	609
Vha464I	CTTAAG	1 cut(s)	580
VpaK11BI	GGWCC	5 cut(s)	80, 193, 617, 693, 989
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	4 cut(s)	22, 366, 639, 1189
XceI	RCATGY	3 cut(s)	424, 738, 885
XmnI	GAANNNNTTC	2 cut(s)	981, 1099
XspI	CTAG	1 cut(s)	1241
ZrmI	AGTACT	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.