Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

13053913 .. 13054167

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0158300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAGAAAATTGCCTGGCTGATATTGGTGTTCTTGATTGGCAAATGTTACATCAACTCATCAGAGATAAAAGTTTTGCAGGTTCAAGTCCACCAAATGAAGGAGGATACGATTTCGAAGCTGATGGAGAATCTTAAGCAAAATCAGCTTGATATGGAAAAGAGAATCAACGAGAAATGTGATCCTGTTAAGTTGATCCGGAGTCAATTGGATGTAGCCAAGGCGCTTAACGGAATCGCCAATGGTTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

84

Amino Acids

9.63

Weight (kDa)

8.98

Isoelectric Point (pI)

29.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccIII	TCCGGA	1 cut(s)	198
AclWI	GGATC	2 cut(s)	176, 190
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	2 cut(s)	121, 148
AluI	AGCT	2 cut(s)	121, 148
AlwI	GGATC	2 cut(s)	176, 190
Aor13HI	TCCGGA	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	116
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	16
BciVI	GTATCC	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	181, 195
BspEI	TCCGGA	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	176, 190
BspT104I	TTCGAA	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	181, 195
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	184, 198
BstMBI	GATC	2 cut(s)	181, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	226
CviJI	RGCY	4 cut(s)	19, 121, 148, 218
CviKI_1	RGCY	4 cut(s)	19, 121, 148, 218
DpnI	GATC	2 cut(s)	183, 197
DpnII	GATC	2 cut(s)	181, 195
Eco130I	CCWWGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaiI	YATR	1 cut(s)	155
FokI	GGATG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	4 cut(s)	130, 165, 202, 234
HpaII	CCGG	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	34, 199
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HspAI	GCGC	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	181, 195
LpnPI	CCDG	4 cut(s)	28, 65, 198, 212
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	183, 197
MboI	GATC	2 cut(s)	181, 195
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	2 cut(s)	9, 206
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	198
MseI	TTAA	3 cut(s)	135, 189, 228
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	181, 195
NspV	TTCGAA	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	130, 165, 234
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	135, 189, 228
Sau3AI	GATC	2 cut(s)	181, 195
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	3 cut(s)	84, 123, 150
SfuI	TTCGAA	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	9, 206
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	9, 206
TfiI	GAWTC	3 cut(s)	130, 165, 234
Tru1I	TTAA	3 cut(s)	135, 189, 228
Tru9I	TTAA	3 cut(s)	135, 189, 228
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.