Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

44211074 .. 44212080

Gene Structure 1007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAACCACGAACTCTGCAACTAATGGAGTTACAAACCCAGCAACAAATGGAATTACAAGCCCATCAACCAACCGAGGAGGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGTTCTACTAGTAATGACAGATCCACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGTCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

204

Amino Acids

23.03

Weight (kDa)

5.27

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 98	1.3e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AciI	CCGC	3 cut(s)	131, 543, 552
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	4 cut(s)	337, 363, 375, 436
AcsI	RAATTY	1 cut(s)	305
AcvI	CACGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	326, 494
AflIII	ACRYGT	1 cut(s)	406
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	203, 301, 470
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	1 cut(s)	577
AluI	AGCT	1 cut(s)	577
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	4 cut(s)	337, 363, 375, 436
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	305
AsiGI	ACCGGT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	449, 509
BanII	GRGCYC	2 cut(s)	124, 579
BauI	CACGAG	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	407
BbsI	GAAGAC	2 cut(s)	247, 527
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	72, 419
BciT130I	CCWGG	1 cut(s)	461
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	587
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	592
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	2 cut(s)	103, 461
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	3 cut(s)	6, 123, 266
BmrFI	CCNGG	2 cut(s)	103, 461
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	2 cut(s)	247, 527
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	3 cut(s)	134, 260, 593
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	75, 531
BsaWI	WCCGGW	2 cut(s)	114, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 494
Bse118I	RCCGGY	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	75, 531
BseLI	CCNNNNNNNGG	2 cut(s)	326, 494
BseMII	CTCAG	1 cut(s)	592
BseRI	GAGGAG	2 cut(s)	92, 462
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	156
BshTI	ACCGGT	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	3 cut(s)	102, 115, 320
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	326, 494
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	124, 579
Bsp143I	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
BspACI	CCGC	3 cut(s)	131, 543, 552
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	591
BspDI	ATCGAT	1 cut(s)	431
BspLI	GGNNCC	3 cut(s)	6, 123, 266
BspPI	GGATC	4 cut(s)	337, 363, 375, 436
BsrFI	RCCGGY	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	75, 531
BssMI	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	407
BstDEI	CTNAG	3 cut(s)	140, 578, 612
BstKTI	GATC	9 cut(s)	210, 240, 332, 340, 371, 383, 391, 431, 435
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	549, 608
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	2 cut(s)	101, 459
BstSFI	CTRYAG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	247, 527
BstX2I	RGATCY	4 cut(s)	207, 329, 368, 380
BstYI	RGATCY	4 cut(s)	207, 329, 368, 380
Bsu15I	ATCGAT	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	181
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	5 cut(s)	436, 490, 494, 517, 607
CviJI	RGCY	9 cut(s)	62, 101, 122, 156, 281, 414, 558, 577, 611
CviKI_1	RGCY	9 cut(s)	62, 101, 122, 156, 281, 414, 558, 577, 611
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	140, 578, 612
DpnI	GATC	9 cut(s)	209, 239, 331, 339, 370, 382, 390, 430, 434
DpnII	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	124, 579
Eco53kI	GAGCTC	1 cut(s)	577
Eco72I	CACGTG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	459
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	124, 579
FaeI	CATG	5 cut(s)	439, 493, 497, 520, 610
FaiI	YATR	9 cut(s)	165, 231, 417, 437, 491, 495, 518, 549, 608
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	5 cut(s)	435, 489, 493, 516, 606
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	2 cut(s)	124, 579
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	3 cut(s)	102, 115, 320
Hin1II	CATG	5 cut(s)	439, 493, 497, 520, 610
HinfI	GANTC	2 cut(s)	144, 199
HpaII	CCGG	3 cut(s)	102, 115, 320
HphI	GGTGA	2 cut(s)	449, 509
Hpy188I	TCNGA	3 cut(s)	222, 312, 532
Hpy188III	TCNNGA	5 cut(s)	191, 203, 268, 284, 335
HpyAV	CCTTC	3 cut(s)	224, 295, 485
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	3 cut(s)	252, 315, 406
HpyCH4V	TGCA	3 cut(s)	19, 493, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	549, 608
HpyF3I	CTNAG	3 cut(s)	140, 578, 612
HpySE526I	ACGT	3 cut(s)	252, 315, 406
Hsp92II	CATG	5 cut(s)	439, 493, 497, 520, 610
Kzo9I	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	53, 115, 128, 204, 281, 333, 446, 473
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	3 cut(s)	252, 315, 406
MaeIII	GTNAC	2 cut(s)	30, 402
MalI	GATC	9 cut(s)	209, 239, 331, 339, 370, 382, 390, 430, 434
MboI	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
MboII	GAAGA	2 cut(s)	247, 532
MflI	RGATCY	4 cut(s)	207, 329, 368, 380
MhlI	GDGCHC	2 cut(s)	124, 579
MluCI	AATT	3 cut(s)	53, 305, 343
Mph1103I	ATGCAT	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	1 cut(s)	177
MspI	CCGG	3 cut(s)	102, 115, 320
MspR9I	CCNGG	2 cut(s)	103, 461
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	549, 608
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
NlaIII	CATG	5 cut(s)	439, 493, 497, 520, 610
NlaIV	GGNNCC	3 cut(s)	6, 123, 266
NmuCI	GTSAC	1 cut(s)	402
NsiI	ATGCAT	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	144, 199
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
Ppu21I	YACGTR	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	579
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	459
PspCI	CACGTG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	3 cut(s)	6, 123, 266
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	4 cut(s)	207, 329, 368, 380
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	9 cut(s)	207, 237, 329, 337, 368, 380, 388, 428, 432
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	103, 461
SduI	GDGCHC	2 cut(s)	124, 579
SetI	ASST	6 cut(s)	255, 276, 318, 409, 541, 579
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	592
SmlI	CTYRAG	3 cut(s)	149, 275, 572
SmoI	CTYRAG	3 cut(s)	149, 275, 572
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	3 cut(s)	53, 305, 343
SsiI	CCGC	3 cut(s)	131, 543, 552
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	101, 459
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	3 cut(s)	255, 318, 409
TaqI	TCGA	3 cut(s)	240, 336, 431
TasI	AATT	3 cut(s)	53, 305, 343
TfiI	GAWTC	2 cut(s)	144, 199
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	2 cut(s)	206, 533
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.