Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

25283096 .. 25284252

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAACTATAATGAAGTTCCTCTACATTGCCGTCCTTTGCAATCTCATTATGGGAGGCAATTGTGAACTTTGTTCTGTAAAGAGTTTGATTATTAAACAGTCAGCAACGGGAAAGTTGGTCCACGGTAAGCCAGAATGGAATGTAAAGATCATTAACGACTGCGCATGTTCTCAAATGAGTGTTAACCTAGATTGTGATGGCTTTCAAACTGTGGAAGAGATTGATCCTACAATCTTGAGAAAATCTGGTATCCAGTGTCTCGTCAATGGTGGCGGACCTATCTATGGGCATAGCAATTTCAGTTTCACCTATGCATGGAGCAATTCATTTCCTTTCAGAATAGTCTTCTCTCGAGTTGCTTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

123

Amino Acids

13.49

Weight (kDa)

8.13

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	28 - 122	1.3e-30	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	287, 318
AgsI	TTSAA	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	121, 278
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	2 cut(s)	121, 278
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbsI	GAAGAC	1 cut(s)	340
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	121, 278
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	121, 278
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 318
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	287, 318
BseMI	GCAATG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	287, 318
BsmAI	GTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	150, 226
BspACI	CCGC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	150, 226
Bst4CI	ACNGT	3 cut(s)	102, 128, 214
Bst6I	CTCTTC	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	153, 229
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	2 cut(s)	150, 226
BstNSI	RCATGY	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	121, 278
CviAII	CATG	2 cut(s)	168, 318
CviJI	RGCY	2 cut(s)	133, 204
CviKI_1	RGCY	2 cut(s)	133, 204
DpnI	GATC	2 cut(s)	152, 228
DpnII	GATC	2 cut(s)	150, 226
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	121, 278
Eco88I	CYCGRG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	319
FaeI	CATG	2 cut(s)	171, 321
FaiI	YATR	7 cut(s)	11, 53, 169, 288, 294, 315, 319
FatI	CATG	2 cut(s)	167, 317
FspBI	CTAG	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	171, 321
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaI	GTTAAC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	68, 124, 187
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	2 cut(s)	238, 354
Hpy8I	GTNNAC	3 cut(s)	68, 124, 187
HpyCH4III	ACNGT	3 cut(s)	102, 128, 214
HpyCH4V	TGCA	2 cut(s)	42, 317
Hsp92II	CATG	2 cut(s)	171, 321
HspAI	GCGC	1 cut(s)	165
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	150, 226
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	3 cut(s)	147, 234, 269
MaeI	CTAG	1 cut(s)	191
MalI	GATC	2 cut(s)	152, 228
MboI	GATC	2 cut(s)	150, 226
MboII	GAAGA	2 cut(s)	230, 340
MfeI	CAATTG	1 cut(s)	61
MluCI	AATT	3 cut(s)	61, 298, 325
MnlI	CCTC	2 cut(s)	32, 50
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	3 cut(s)	96, 156, 186
MunI	CAATTG	1 cut(s)	61
NdeII	GATC	2 cut(s)	150, 226
NlaIII	CATG	2 cut(s)	171, 321
NsbI	TGCGCA	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	319
NspI	RCATGY	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	121, 278
SaqAI	TTAA	3 cut(s)	96, 156, 186
Sau3AI	GATC	2 cut(s)	150, 226
Sau96I	GGNCC	2 cut(s)	121, 278
SetI	ASST	3 cut(s)	192, 283, 314
Sfr274I	CTCGAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	121, 278
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	238, 354
SmoI	CTYRAG	2 cut(s)	238, 354
Sse9I	AATT	3 cut(s)	61, 298, 325
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	102, 128, 214
TaqI	TCGA	1 cut(s)	355
TasI	AATT	3 cut(s)	61, 298, 325
Tru1I	TTAA	3 cut(s)	96, 156, 186
Tru9I	TTAA	3 cut(s)	96, 156, 186
TscAI	CASTG	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	29, 318
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	121, 278
XceI	RCATGY	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	354
XspI	CTAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.