Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

9778496 .. 9779293

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTGTTTACTGGATCTGGTGACTGATTCACTGGTCAGGTATGAGTTCAATCTATTGGACTTTCGGCTTGTGGAGTTGCGAAAGTCATATGTTCTTAAAGATACCGAGTATGTCTGTTTTCCTGTTGATTCCGTGCAAAAAGTGGTGGTTATGACTGATGAGCATTTGAACATTGATAATGTGTATGCGGTATTTATGATTTTTAAGAGAGGGAATCTGGGTTTTGTGAGGGTTGGAGATGAGAAGTTGATCAATGTCGATGAACAAAACTCGGATTATCATGATATCATCATTGACGAGGGTCAATATTATTGGGGGATAATTTCATGGGTCAATTCAGCTTTGGAGGTGATTCAGTTTTCGCCTCCGATATGTGGGTCTGGTGGGCAGAAGCATTTGGTGGAATCTTGTGGTGATCTTTACGTGGTTGTTCAGTACGGTGCAACGTTGACTTGCCAGGGCAATAGGAGAGTTAGGTACTCACACCAAGAGGATGAATATCCTGAAGCAATTGGTTTTAAAGTTTGTAAGCTGGATCAAGAATGGGGTAATTATAAATGGGTCAATGTGAAAGACTTGGGAGATCGAGTGTTTATTTTAAGCAATGATGGGTCTTTCTCTGTCTCCACCAGAGAGTTTGCTGGAGTGAAAGGAAATTGCATTTTCTTCATTGCACAAGCATCAGCAAGGTGTTACAGTTGTGTGTTCAGTTTGGAGGATGGTAGGATTAGGAACCTAGCATCTTCGGAGTGTTCTCAGATGGTTCAGCCACCTTCAAATTTGCTCAACCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

265

Amino Acids

30.16

Weight (kDa)

4.84

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	43 - 225	4.4e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	446
AclWI	GGATC	2 cut(s)	21, 543
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	437, 479
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	49, 169, 777
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	2 cut(s)	341, 532
AluI	AGCT	2 cut(s)	341, 532
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	21, 543
ApoI	RAATTY	1 cut(s)	778
AsuHPI	GGTGA	3 cut(s)	31, 361, 425
BccI	CCATC	3 cut(s)	602, 713, 754
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	1 cut(s)	737
Bme1390I	CCNGG	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	734
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	2 cut(s)	689, 749
BoxI	GACNNNNGTC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	15, 36
Bse3DI	GCAATG	2 cut(s)	610, 669
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	2 cut(s)	499, 724
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	2 cut(s)	610, 669
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	2 cut(s)	15, 36
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	13, 249, 415, 535, 583
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	769
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	21, 543
BsrDI	GCAATG	2 cut(s)	610, 669
BsrI	ACTGG	2 cut(s)	15, 36
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	5 cut(s)	13, 249, 415, 535, 583
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	440, 698
BstBAI	YACGTR	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	756
BstF5I	GGATG	2 cut(s)	499, 724
BstKTI	GATC	5 cut(s)	16, 252, 418, 538, 586
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	5 cut(s)	13, 249, 415, 535, 583
BstNI	CCWGG	1 cut(s)	458
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	499, 724
BtsIMutI	CAGTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	436, 478
CviAII	CATG	2 cut(s)	281, 327
CviJI	RGCY	4 cut(s)	67, 341, 532, 769
CviKI_1	RGCY	4 cut(s)	67, 341, 532, 769
CviQI	GTAC	2 cut(s)	436, 478
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	5 cut(s)	15, 251, 417, 537, 585
DpnII	GATC	5 cut(s)	13, 249, 415, 535, 583
DraI	TTTAAA	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	456
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	2 cut(s)	284, 330
FatI	CATG	2 cut(s)	280, 326
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	249
FokI	GGATG	2 cut(s)	506, 731
FspBI	CTAG	1 cut(s)	737
GsuI	CTGGAG	1 cut(s)	663
Hin1II	CATG	2 cut(s)	284, 330
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	5 cut(s)	26, 128, 214, 352, 404
HphI	GGTGA	3 cut(s)	31, 361, 425
Hpy166II	GTNNAC	2 cut(s)	8, 450
Hpy188I	TCNGA	4 cut(s)	274, 369, 748, 759
Hpy188III	TCNNGA	3 cut(s)	281, 503, 539
Hpy8I	GTNNAC	2 cut(s)	8, 450
HpyAV	CCTTC	1 cut(s)	783
HpyCH4III	ACNGT	2 cut(s)	440, 698
HpyCH4IV	ACGT	2 cut(s)	423, 446
HpyCH4V	TGCA	4 cut(s)	136, 443, 660, 674
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	2 cut(s)	423, 446
Hsp92II	CATG	2 cut(s)	284, 330
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	13, 249, 415, 535, 583
LweI	GCATC	2 cut(s)	689, 749
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	2 cut(s)	423, 446
MaeIII	GTNAC	2 cut(s)	19, 692
MalI	GATC	5 cut(s)	15, 251, 417, 537, 585
MboI	GATC	5 cut(s)	13, 249, 415, 535, 583
MboII	GAAGA	2 cut(s)	658, 735
MfeI	CAATTG	2 cut(s)	510, 793
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	7 cut(s)	321, 334, 510, 550, 655, 778, 793
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	203, 222, 292, 340, 375, 484, 709
MseI	TTAA	4 cut(s)	96, 204, 519, 599
MspR9I	CCNGG	1 cut(s)	458
MunI	CAATTG	2 cut(s)	510, 793
MvaI	CCWGG	1 cut(s)	458
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	5 cut(s)	13, 249, 415, 535, 583
NlaIII	CATG	2 cut(s)	284, 330
NlaIV	GGNNCC	1 cut(s)	734
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	5 cut(s)	26, 128, 214, 352, 404
Ppu21I	YACGTR	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	734
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	437, 479
RsaNI	GTAC	2 cut(s)	436, 478
SaqAI	TTAA	4 cut(s)	96, 204, 519, 599
Sau3AI	GATC	5 cut(s)	13, 249, 415, 535, 583
ScrFI	CCNGG	1 cut(s)	458
SfaNI	GCATC	2 cut(s)	689, 749
Sse9I	AATT	7 cut(s)	321, 334, 510, 550, 655, 778, 793
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	440, 698
TaiI	ACGT	2 cut(s)	426, 449
TaqI	TCGA	2 cut(s)	258, 586
TasI	AATT	7 cut(s)	321, 334, 510, 550, 655, 778, 793
TfiI	GAWTC	5 cut(s)	26, 128, 214, 352, 404
Tru1I	TTAA	4 cut(s)	96, 204, 519, 599
Tru9I	TTAA	4 cut(s)	96, 204, 519, 599
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	276, 315, 510, 658
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	778
XspI	CTAG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.