Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

9969307 .. 9969846

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42862

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTCCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTAAACTTTGGCTCACGTGTCGGCTATGGTGTTGATGGATCGATCATGGAACAACGAGTAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGACTCTCGCATTTCTCTTGAGCTCAGCCTCAACTCCTACGGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

179

Amino Acids

20.06

Weight (kDa)

4.98

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	14 - 74	1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AciI	CCGC	3 cut(s)	59, 468, 477
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	5 cut(s)	265, 273, 286, 300, 361
AcsI	RAATTY	1 cut(s)	233
AcvI	CACGTG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	254, 419
AflIII	ACRYGT	1 cut(s)	331
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	131, 229, 395
AhlI	ACTAGT	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw21I	GWGCWC	1 cut(s)	504
AlwI	GGATC	5 cut(s)	265, 273, 286, 300, 361
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	233
AsiGI	ACCGGT	1 cut(s)	42
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	374, 434, 491
BamHI	GGATCC	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	52, 504
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	175, 452
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	4 cut(s)	2, 153, 293, 344
BciT130I	CCWGG	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	2 cut(s)	27, 469
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	2 cut(s)	28, 470
Bme1390I	CCNGG	2 cut(s)	31, 386
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	51, 194, 280
BmrFI	CCNGG	2 cut(s)	31, 386
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	2 cut(s)	175, 452
BpmI	CTGGAG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuEI	CTTGAG	3 cut(s)	62, 188, 518
BpuMI	CCSGG	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	456
BsaWI	WCCGGW	2 cut(s)	42, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 419
Bse118I	RCCGGY	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	254, 419
BseMII	CTCAG	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	84
BshTI	ACCGGT	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	3 cut(s)	30, 43, 248
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	254, 419
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	52, 504
Bsp143I	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	3 cut(s)	59, 468, 477
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	516
BspDI	ATCGAT	1 cut(s)	356
BspLI	GGNNCC	3 cut(s)	51, 194, 280
BspPI	GGATC	5 cut(s)	265, 273, 286, 300, 361
BsrFI	RCCGGY	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	68, 503, 537
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	9 cut(s)	138, 168, 260, 268, 281, 308, 316, 356, 360
BstMBI	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 533
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	29, 384
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	2 cut(s)	175, 452
BstX2I	RGATCY	4 cut(s)	135, 257, 278, 305
BstYI	RGATCY	4 cut(s)	135, 257, 278, 305
Bsu15I	ATCGAT	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	109
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	5 cut(s)	361, 415, 419, 442, 532
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	3 cut(s)	68, 503, 537
DpnI	GATC	9 cut(s)	137, 167, 259, 267, 280, 307, 315, 355, 359
DpnII	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	2 cut(s)	52, 504
Eco53kI	GAGCTC	1 cut(s)	502
Eco72I	CACGTG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	420
EcoT38I	GRGCYC	2 cut(s)	52, 504
FaeI	CATG	5 cut(s)	364, 418, 422, 445, 535
FaiI	YATR	9 cut(s)	93, 159, 342, 362, 416, 420, 443, 474, 533
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	5 cut(s)	360, 414, 418, 441, 531
Fnu4HI	GCNGC	2 cut(s)	27, 469
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	2 cut(s)	52, 504
Fsp4HI	GCNGC	2 cut(s)	27, 469
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	27, 469
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	3 cut(s)	30, 43, 248
Hin1II	CATG	5 cut(s)	364, 418, 422, 445, 535
HinfI	GANTC	3 cut(s)	72, 127, 482
HpaII	CCGG	3 cut(s)	30, 43, 248
HphI	GGTGA	3 cut(s)	374, 434, 491
Hpy188I	TCNGA	3 cut(s)	150, 240, 457
Hpy188III	TCNNGA	6 cut(s)	119, 131, 196, 212, 263, 497
HpyAV	CCTTC	2 cut(s)	223, 410
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	3 cut(s)	180, 243, 331
HpyCH4V	TGCA	2 cut(s)	418, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 533
HpyF3I	CTNAG	3 cut(s)	68, 503, 537
HpySE526I	ACGT	3 cut(s)	180, 243, 331
Hsp92II	CATG	5 cut(s)	364, 418, 422, 445, 535
Kzo9I	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	43, 56, 132, 209, 261, 371, 398
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	3 cut(s)	180, 243, 331
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	9 cut(s)	137, 167, 259, 267, 280, 307, 315, 355, 359
MboI	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
MboII	GAAGA	2 cut(s)	175, 457
MflI	RGATCY	4 cut(s)	135, 257, 278, 305
MhlI	GDGCHC	2 cut(s)	52, 504
MluCI	AATT	2 cut(s)	233, 271
MlyI	GAGTC	1 cut(s)	476
Mph1103I	ATGCAT	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	105
MspI	CCGG	3 cut(s)	30, 43, 248
MspR9I	CCNGG	2 cut(s)	31, 386
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	474, 533
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
NlaIII	CATG	5 cut(s)	364, 418, 422, 445, 535
NlaIV	GGNNCC	3 cut(s)	51, 194, 280
NmuCI	GTSAC	1 cut(s)	479
NsiI	ATGCAT	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	72, 127
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	28, 470
PleI	GAGTC	1 cut(s)	476
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	504
Psp1406I	AACGTT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	51, 194, 280
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	4 cut(s)	135, 257, 278, 305
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	27, 469
Sau3AI	GATC	9 cut(s)	135, 165, 257, 265, 278, 305, 313, 353, 357
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	31, 386
SduI	GDGCHC	2 cut(s)	52, 504
SetI	ASST	6 cut(s)	183, 204, 246, 334, 466, 504
SfaNI	GCATC	1 cut(s)	514
SmlI	CTYRAG	3 cut(s)	77, 203, 497
SmoI	CTYRAG	3 cut(s)	77, 203, 497
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	2 cut(s)	233, 271
SsiI	CCGC	3 cut(s)	59, 468, 477
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	29, 384
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	3 cut(s)	183, 246, 334
TaqI	TCGA	3 cut(s)	168, 264, 356
TasI	AATT	2 cut(s)	233, 271
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	72, 127
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	534
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.