Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

10199940 .. 10202043

Gene Structure 2104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACATGCAAGAAATACACAACGCTGCTTTAGCTTATTACCAGAACTTATCAGATGAGCTAAAGCAGAAGGCATCTGAAAAATTTAAAGAAATGGATTCTAATGATAATGGCACAATAAGCATCAAGGAGTTCAGCCAGAGTTTGGGCAGCTCCGAGATCAAGCGCTGCTTCAAGTTGCTGGACAAAACCGGAGACGGCAAGTTGGATTTCAACGAATTCATCACTCTTTACTACCTCGTGGAGAGTGGGAGAGGGGTTTTCTGTGACGGCCATGGATGTAAGGCCTCCCCTTTTCTCAACGGACTGTATTTTACTTGCGTTGAGTGTTTCCATAACAACGAAGCTGCAACGTTCGATCTCTGCACCTCCTGCTACCGCGATGGAAAGTATGATCACAACCATGCCAGCTTTTTGGATAATTACGTCTTGCTGCGTTCCAAGGCTGCTTGTGAATCCACAACACCAACGGAAGATGATCATCATGAGGTAAACGCTGCAGAATCTGCTCAACTAATTAGTCGTGGATTTAAAACTGTTTCCAATCAATTTAGTCGATCTGGGCCGTCTGAAATGCCAAGCTCTCCTAAGAGCGATTCTGAGTCTGAGTCTGAGTTCGATGCTGAGTCTAATCAAGTTAGCCAATCTGGGTCTAAAAGGAGGGCAGTATTTGAAGCAATAAAATCACTCAAGTCCCAAGTTAGCATTGGAGATGCTGCTGCTGCTGCTGATGAGTCTGGTTCCTGCAGCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

252

Amino Acids

27.74

Weight (kDa)

4.91

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	23 - 79	2.4e-10	EF-hand domain pair
EF-hand_1	PF00036	53 - 77	4.4e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	379
AclI	AACGTT	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	83, 218
AfeI	AGCGCT	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	175, 214, 674
AluBI	AGCT	6 cut(s)	35, 61, 153, 347, 411, 582
AluI	AGCT	6 cut(s)	35, 61, 153, 347, 411, 582
Alw26I	GTCTC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	506
Aor51HI	AGCGCT	1 cut(s)	167
AoxI	GGCC	3 cut(s)	271, 285, 563
ApoI	RAATTY	2 cut(s)	83, 218
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	239
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	3 cut(s)	214, 286, 550
BclI	TGATCA	2 cut(s)	394, 478
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	2 cut(s)	498, 745
BfoI	RGCGCY	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	742
BmsI	GCATC	4 cut(s)	83, 132, 610, 703
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	274, 441
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	274, 441
BseGI	GGATG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	4 cut(s)	591, 597, 603, 615
BsgI	GTGCAG	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	273, 287, 565
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	679
BsnI	GGCC	3 cut(s)	273, 287, 565
Bsp143I	GATC	5 cut(s)	159, 358, 394, 478, 557
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	3 cut(s)	273, 287, 565
BspCNI	CTCAG	4 cut(s)	592, 598, 604, 616
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	742
BspMAI	CTGCAG	2 cut(s)	502, 749
BssECI	CCNNGG	2 cut(s)	274, 441
BssMI	GATC	5 cut(s)	159, 358, 394, 478, 557
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	274, 441
Bst2BI	CACGAG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	309, 538
BstAPI	GCANNNNNTGC	2 cut(s)	372, 506
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	588, 600, 606, 612, 624
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	5 cut(s)	162, 361, 397, 481, 560
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	5 cut(s)	159, 358, 394, 478, 557
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 120, 372, 506, 722, 725
BstNSI	RCATGY	1 cut(s)	10
BstSFI	CTRYAG	2 cut(s)	498, 745
BstUI	CGCG	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	273, 287, 565
BtgI	CCRYGG	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	563
CviAII	CATG	4 cut(s)	7, 275, 404, 485
DdeI	CTNAG	5 cut(s)	588, 600, 606, 612, 624
DpnI	GATC	5 cut(s)	161, 360, 396, 480, 559
DpnII	GATC	5 cut(s)	159, 358, 394, 478, 557
DraI	TTTAAA	2 cut(s)	88, 532
EaeI	YGGCCR	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	274, 441
Eco147I	AGGCCT	1 cut(s)	287
Eco47III	AGCGCT	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	274, 441
ErhI	CCWWGG	2 cut(s)	274, 441
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	10, 278, 407, 488
FaiI	YATR	7 cut(s)	8, 276, 336, 393, 405, 486, 755
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	4 cut(s)	6, 274, 403, 484
FbaI	TGATCA	2 cut(s)	394, 478
FokI	GGATG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	273, 287, 565
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	10, 278, 407, 488
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	8 cut(s)	98, 455, 503, 596, 602, 608, 626, 734
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	7 cut(s)	55, 79, 157, 571, 601, 607, 613
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	309, 538
HpyCH4IV	ACGT	2 cut(s)	353, 426
HpyCH4V	TGCA	5 cut(s)	10, 350, 366, 500, 747
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 120, 372, 506, 722, 725
HpyF3I	CTNAG	5 cut(s)	588, 600, 606, 612, 624
HpySE526I	ACGT	2 cut(s)	353, 426
Hsp92II	CATG	4 cut(s)	10, 278, 407, 488
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	394, 478
Kzo9I	GATC	5 cut(s)	159, 358, 394, 478, 557
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	9 cut(s)	56, 152, 167, 205, 385, 421, 546, 633, 723
LweI	GCATC	4 cut(s)	83, 132, 610, 703
MaeII	ACGT	2 cut(s)	353, 426
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	5 cut(s)	161, 360, 396, 480, 559
MboI	GATC	5 cut(s)	159, 358, 394, 478, 557
MboII	GAAGA	1 cut(s)	485
MluCI	AATT	5 cut(s)	83, 218, 421, 516, 548
MlyI	GAGTC	4 cut(s)	611, 617, 635, 743
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	248, 248, 298, 379, 481, 654
MseI	TTAA	2 cut(s)	87, 531
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	6 cut(s)	32, 120, 372, 506, 722, 725
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	5 cut(s)	159, 358, 394, 478, 557
NlaIII	CATG	4 cut(s)	10, 278, 407, 488
NlaIV	GGNNCC	1 cut(s)	742
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	10
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	287
PfeI	GAWTC	4 cut(s)	98, 455, 503, 596
PflMI	CCANNNNNTGG	1 cut(s)	145
PleI	GAGTC	4 cut(s)	610, 616, 634, 742
PpsI	GAGTC	4 cut(s)	610, 616, 634, 742
Psp1406I	AACGTT	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	2 cut(s)	502, 749
PstNI	CAGNNNCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	87, 531
Sau3AI	GATC	5 cut(s)	159, 358, 394, 478, 557
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	4 cut(s)	611, 617, 635, 743
SfaNI	GCATC	4 cut(s)	83, 132, 610, 703
SfcI	CTRYAG	2 cut(s)	498, 745
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	5 cut(s)	83, 218, 421, 516, 548
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	379
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	274, 441
TaaI	ACNGT	2 cut(s)	309, 538
TaiI	ACGT	2 cut(s)	356, 429
TaqI	TCGA	3 cut(s)	357, 556, 618
TasI	AATT	5 cut(s)	83, 218, 421, 516, 548
TfiI	GAWTC	4 cut(s)	98, 455, 503, 596
Tru1I	TTAA	2 cut(s)	87, 531
Tru9I	TTAA	2 cut(s)	87, 531
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	2 cut(s)	318, 485
Van91I	CCANNNNNTGG	1 cut(s)	145
XapI	RAATTY	2 cut(s)	83, 218
XceI	RCATGY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.