Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

38806706 .. 38807128

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGTTCCACTGGTTCTACTAGTAATGACAGATCCACTAACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

140

Amino Acids

16.01

Weight (kDa)

7.84

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	5.8e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	4 cut(s)	289, 324, 336, 397
AcsI	RAATTY	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	367
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	155, 253
AhlI	ACTAGT	1 cut(s)	317
AlwI	GGATC	4 cut(s)	289, 324, 336, 397
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 380
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	318, 421
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	75, 218, 304
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	86, 212
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	368
BsaWI	WCCGGW	2 cut(s)	66, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	313
BseCI	ATCGAT	1 cut(s)	392
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	54, 67, 272
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	108
BspDI	ATCGAT	1 cut(s)	392
BspLI	GGNNCC	3 cut(s)	75, 218, 304
BspPI	GGATC	4 cut(s)	289, 324, 336, 397
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	9 cut(s)	162, 192, 284, 292, 332, 344, 352, 392, 396
BstMBI	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	4 cut(s)	159, 281, 329, 341
BstYI	RGATCY	4 cut(s)	159, 281, 329, 341
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	5 cut(s)	53, 74, 108, 233, 375
CviKI_1	RGCY	5 cut(s)	53, 74, 108, 233, 375
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	9 cut(s)	161, 191, 283, 291, 331, 343, 351, 391, 395
DpnII	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	400
FaiI	YATR	4 cut(s)	117, 183, 378, 398
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	318, 421
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	3 cut(s)	54, 67, 272
Hin1II	CATG	1 cut(s)	400
HinfI	GANTC	2 cut(s)	96, 151
HpaII	CCGG	3 cut(s)	54, 67, 272
Hpy188I	TCNGA	2 cut(s)	174, 264
Hpy188III	TCNNGA	5 cut(s)	143, 155, 220, 236, 287
HpyAV	CCTTC	2 cut(s)	176, 247
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	3 cut(s)	204, 267, 367
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	3 cut(s)	204, 267, 367
Hsp92II	CATG	1 cut(s)	400
Kzo9I	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
LmnI	GCTCC	2 cut(s)	4, 79
LpnPI	CCDG	7 cut(s)	29, 67, 80, 156, 233, 285, 294
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	318, 421
MaeII	ACGT	3 cut(s)	204, 267, 367
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	9 cut(s)	161, 191, 283, 291, 331, 343, 351, 391, 395
MboI	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	4 cut(s)	159, 281, 329, 341
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	257, 295
MnlI	CCTC	8 cut(s)	22, 29, 96, 110, 187, 234, 236, 401
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	54, 67, 272
MspR9I	CCNGG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	3 cut(s)	75, 218, 304
NmuCI	GTSAC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	96, 151
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	75, 218, 304
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	4 cut(s)	159, 281, 329, 341
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	9 cut(s)	159, 189, 281, 289, 329, 341, 349, 389, 393
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	4 cut(s)	207, 228, 270, 370
SmlI	CTYRAG	2 cut(s)	101, 227
SmoI	CTYRAG	2 cut(s)	101, 227
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	2 cut(s)	257, 295
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	318, 421
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	3 cut(s)	207, 270, 370
TaqI	TCGA	4 cut(s)	27, 192, 288, 392
TasI	AATT	2 cut(s)	257, 295
TfiI	GAWTC	2 cut(s)	96, 151
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	2 cut(s)	318, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.