Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 208 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcuI | CTGAAG | 1 cut(s) | 450 |
| AcvI | CACGTG | 1 cut(s) | 797 |
| AfaI | GTAC | 4 cut(s) | 114, 229, 521, 676 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 208, 380, 467, 671 |
| AgsI | TTSAA | 2 cut(s) | 224, 329 |
| AhlI | ACTAGT | 1 cut(s) | 281 |
| AjiI | CACGTC | 1 cut(s) | 845 |
| AjnI | CCWGG | 1 cut(s) | 697 |
| AluBI | AGCT | 5 cut(s) | 248, 649, 886, 934, 953 |
| AluI | AGCT | 5 cut(s) | 248, 649, 886, 934, 953 |
| Alw21I | GWGCWC | 1 cut(s) | 910 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| Alw44I | GTGCAC | 1 cut(s) | 906 |
| AlwI | GGATC | 1 cut(s) | 470 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 514 |
| AoxI | GGCC | 1 cut(s) | 810 |
| ApaLI | GTGCAC | 1 cut(s) | 906 |
| ApeKI | GCWGC | 4 cut(s) | 150, 256, 514, 785 |
| AseI | ATTAAT | 1 cut(s) | 668 |
| AspS9I | GGNCC | 1 cut(s) | 458 |
| AsuC2I | CCSGG | 1 cut(s) | 776 |
| AsuHPI | GGTGA | 2 cut(s) | 140, 654 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| AvaII | GGWCC | 1 cut(s) | 458 |
| BaeGI | GKGCMC | 1 cut(s) | 910 |
| BauI | CACGAG | 1 cut(s) | 360 |
| BbrPI | CACGTG | 1 cut(s) | 797 |
| BbsI | GAAGAC | 2 cut(s) | 305, 743 |
| Bbv12I | GWGCWC | 1 cut(s) | 910 |
| BbvCI | CCTCAGC | 1 cut(s) | 192 |
| BbvI | GCAGC | 4 cut(s) | 162, 268, 501, 772 |
| BccI | CCATC | 2 cut(s) | 32, 553 |
| BciT130I | CCWGG | 1 cut(s) | 699 |
| BcnI | CCSGG | 1 cut(s) | 776 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BcuI | ACTAGT | 1 cut(s) | 281 |
| BfaI | CTAG | 4 cut(s) | 267, 282, 887, 903 |
| BfmI | CTRYAG | 3 cut(s) | 148, 254, 515 |
| BisI | GCNGC | 4 cut(s) | 151, 257, 515, 786 |
| BlsI | GCNGC | 4 cut(s) | 152, 258, 516, 787 |
| Bme1390I | CCNGG | 2 cut(s) | 699, 776 |
| Bme18I | GGWCC | 1 cut(s) | 458 |
| BmgBI | CACGTC | 1 cut(s) | 845 |
| BmgT120I | GGNCC | 1 cut(s) | 458 |
| BmrFI | CCNGG | 2 cut(s) | 699, 776 |
| BmsI | GCATC | 3 cut(s) | 443, 497, 550 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BpiI | GAAGAC | 2 cut(s) | 305, 743 |
| BpmI | CTGGAG | 2 cut(s) | 848, 869 |
| Bpu10I | CCTNAGC | 3 cut(s) | 192, 869, 918 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| BpuMI | CCSGG | 1 cut(s) | 776 |
| BsaAI | YACGTR | 1 cut(s) | 797 |
| BsaJI | CCNNGG | 2 cut(s) | 207, 698 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 937 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 208, 380, 467, 671 |
| Bse1I | ACTGG | 1 cut(s) | 831 |
| Bse3DI | GCAATG | 2 cut(s) | 240, 660 |
| BseBI | CCWGG | 1 cut(s) | 699 |
| BseDI | CCNNGG | 2 cut(s) | 207, 698 |
| BseGI | GGATG | 2 cut(s) | 541, 631 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 208, 380, 467, 671 |
| BseMI | GCAATG | 2 cut(s) | 240, 660 |
| BseMII | CTCAG | 2 cut(s) | 183, 909 |
| BseNI | ACTGG | 1 cut(s) | 831 |
| BseRI | GAGGAG | 2 cut(s) | 763, 866 |
| BseSI | GKGCMC | 1 cut(s) | 910 |
| BseXI | GCAGC | 4 cut(s) | 162, 268, 501, 772 |
| BshFI | GGCC | 1 cut(s) | 812 |
| BsiHKAI | GWGCWC | 1 cut(s) | 910 |
| BsiSI | CCGG | 1 cut(s) | 775 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 208, 380, 467, 671 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 1 cut(s) | 812 |
| Bsp1286I | GDGCHC | 1 cut(s) | 910 |
| Bsp143I | GATC | 2 cut(s) | 356, 475 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspANI | GGCC | 1 cut(s) | 812 |
| BspCNI | CTCAG | 2 cut(s) | 184, 910 |
| BspMAI | CTGCAG | 3 cut(s) | 152, 258, 519 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BsrDI | GCAATG | 2 cut(s) | 240, 660 |
| BsrI | ACTGG | 1 cut(s) | 831 |
| BssECI | CCNNGG | 2 cut(s) | 207, 698 |
| BssMI | GATC | 2 cut(s) | 356, 475 |
| BssSI | CACGAG | 1 cut(s) | 360 |
| BssT1I | CCWWGG | 1 cut(s) | 207 |
| Bst2BI | CACGAG | 1 cut(s) | 360 |
| Bst2UI | CCWGG | 1 cut(s) | 699 |
| Bst4CI | ACNGT | 5 cut(s) | 54, 60, 95, 304, 742 |
| Bst6I | CTCTTC | 1 cut(s) | 752 |
| BstBAI | YACGTR | 1 cut(s) | 797 |
| BstC8I | GCNNGC | 3 cut(s) | 268, 651, 810 |
| BstDEI | CTNAG | 3 cut(s) | 192, 869, 918 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 2 cut(s) | 541, 631 |
| BstKTI | GATC | 2 cut(s) | 359, 478 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 2 cut(s) | 356, 475 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 547, 580, 655, 874, 883 |
| BstNI | CCWGG | 1 cut(s) | 699 |
| BstSCI | CCNGG | 2 cut(s) | 697, 774 |
| BstSFI | CTRYAG | 3 cut(s) | 148, 254, 515 |
| BstSLI | GKGCMC | 1 cut(s) | 910 |
| BstV1I | GCAGC | 4 cut(s) | 162, 268, 501, 772 |
| BstV2I | GAAGAC | 2 cut(s) | 305, 743 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 214 |
| BsuRI | GGCC | 1 cut(s) | 812 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtgZI | GCGATG | 1 cut(s) | 474 |
| BtrI | CACGTC | 1 cut(s) | 845 |
| BtsCI | GGATG | 2 cut(s) | 541, 631 |
| BtsIMutI | CAGTG | 1 cut(s) | 515 |
| Cac8I | GCNNGC | 3 cut(s) | 268, 651, 810 |
| CaiI | CAGNNNCTG | 1 cut(s) | 514 |
| Cfr13I | GGNCC | 1 cut(s) | 458 |
| CseI | GACGC | 1 cut(s) | 248 |
| Csp6I | GTAC | 4 cut(s) | 113, 228, 520, 675 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 491, 526 |
| CviAII | CATG | 3 cut(s) | 133, 154, 208 |
| CviQI | GTAC | 4 cut(s) | 113, 228, 520, 675 |
| DdeI | CTNAG | 3 cut(s) | 192, 869, 918 |
| DpnI | GATC | 2 cut(s) | 358, 477 |
| DpnII | GATC | 2 cut(s) | 356, 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 752 |
| EarI | CTCTTC | 1 cut(s) | 752 |
| Eco130I | CCWWGG | 1 cut(s) | 207 |
| Eco147I | AGGCCT | 1 cut(s) | 812 |
| Eco47I | GGWCC | 1 cut(s) | 458 |
| Eco57I | CTGAAG | 1 cut(s) | 450 |
| Eco72I | CACGTG | 1 cut(s) | 797 |
| EcoRII | CCWGG | 1 cut(s) | 697 |
| EcoT14I | CCWWGG | 1 cut(s) | 207 |
| ErhI | CCWWGG | 1 cut(s) | 207 |
| FaeI | CATG | 3 cut(s) | 136, 157, 211 |
| FatI | CATG | 3 cut(s) | 132, 153, 207 |
| Fnu4HI | GCNGC | 4 cut(s) | 151, 257, 515, 786 |
| FokI | GGATG | 2 cut(s) | 528, 638 |
| Fsp4HI | GCNGC | 4 cut(s) | 151, 257, 515, 786 |
| FspBI | CTAG | 4 cut(s) | 267, 282, 887, 903 |
| GluI | GCNGC | 4 cut(s) | 151, 257, 515, 786 |
| GsuI | CTGGAG | 2 cut(s) | 848, 869 |
| HaeIII | GGCC | 1 cut(s) | 812 |
| HapII | CCGG | 1 cut(s) | 775 |
| HgaI | GACGC | 1 cut(s) | 248 |
| Hin1II | CATG | 3 cut(s) | 136, 157, 211 |
| HindIII | AAGCTT | 1 cut(s) | 246 |
| HinfI | GANTC | 1 cut(s) | 779 |
| HpaII | CCGG | 1 cut(s) | 775 |
| HphI | GGTGA | 2 cut(s) | 140, 654 |
| Hpy166II | GTNNAC | 2 cut(s) | 794, 908 |
| Hpy188I | TCNGA | 3 cut(s) | 439, 685, 962 |
| Hpy188III | TCNNGA | 3 cut(s) | 360, 848, 917 |
| Hpy8I | GTNNAC | 2 cut(s) | 794, 908 |
| HpyAV | CCTTC | 3 cut(s) | 218, 669, 886 |
| HpyCH4III | ACNGT | 5 cut(s) | 54, 60, 95, 304, 742 |
| HpyCH4IV | ACGT | 2 cut(s) | 796, 844 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 547, 580, 655, 874, 883 |
| HpyF3I | CTNAG | 3 cut(s) | 192, 869, 918 |
| HpySE526I | ACGT | 2 cut(s) | 796, 844 |
| Hsp92II | CATG | 3 cut(s) | 136, 157, 211 |
| Kzo9I | GATC | 2 cut(s) | 356, 475 |
| LmnI | GCTCC | 2 cut(s) | 883, 958 |
| Lsp1109I | GCAGC | 4 cut(s) | 162, 268, 501, 772 |
| LweI | GCATC | 3 cut(s) | 443, 497, 550 |
| MaeI | CTAG | 4 cut(s) | 267, 282, 887, 903 |
| MaeII | ACGT | 2 cut(s) | 796, 844 |
| MaeIII | GTNAC | 2 cut(s) | 54, 128 |
| MalI | GATC | 2 cut(s) | 358, 477 |
| MboI | GATC | 2 cut(s) | 356, 475 |
| MboII | GAAGA | 3 cut(s) | 310, 748, 769 |
| MhlI | GDGCHC | 1 cut(s) | 910 |
| MluCI | AATT | 2 cut(s) | 43, 420 |
| MseI | TTAA | 2 cut(s) | 278, 668 |
| MslI | CAYNNNNRTG | 1 cut(s) | 212 |
| MspI | CCGG | 1 cut(s) | 775 |
| MspR9I | CCNGG | 2 cut(s) | 699, 776 |
| MvaI | CCWGG | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 547, 580, 655, 874, 883 |
| NciI | CCSGG | 1 cut(s) | 776 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NdeII | GATC | 2 cut(s) | 356, 475 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NlaIII | CATG | 3 cut(s) | 136, 157, 211 |
| NmuCI | GTSAC | 2 cut(s) | 54, 128 |
| PceI | AGGCCT | 1 cut(s) | 812 |
| PfeI | GAWTC | 1 cut(s) | 779 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 208 |
| PkrI | GCNGC | 4 cut(s) | 152, 258, 516, 787 |
| PmaCI | CACGTG | 1 cut(s) | 797 |
| PmlI | CACGTG | 1 cut(s) | 797 |
| Ppu21I | YACGTR | 1 cut(s) | 797 |
| PshBI | ATTAAT | 1 cut(s) | 668 |
| Psp6I | CCWGG | 1 cut(s) | 697 |
| PspCI | CACGTG | 1 cut(s) | 797 |
| PspGI | CCWGG | 1 cut(s) | 697 |
| PspPI | GGNCC | 1 cut(s) | 458 |
| PstI | CTGCAG | 3 cut(s) | 152, 258, 519 |
| PstNI | CAGNNNCTG | 1 cut(s) | 514 |
| RsaI | GTAC | 4 cut(s) | 114, 229, 521, 676 |
| RsaNI | GTAC | 4 cut(s) | 113, 228, 520, 675 |
| RseI | CAYNNNNRTG | 1 cut(s) | 212 |
| SaqAI | TTAA | 2 cut(s) | 278, 668 |
| SatI | GCNGC | 4 cut(s) | 151, 257, 515, 786 |
| Sau3AI | GATC | 2 cut(s) | 356, 475 |
| Sau96I | GGNCC | 1 cut(s) | 458 |
| ScrFI | CCNGG | 2 cut(s) | 699, 776 |
| SduI | GDGCHC | 1 cut(s) | 910 |
| SfaNI | GCATC | 3 cut(s) | 443, 497, 550 |
| SfcI | CTRYAG | 3 cut(s) | 148, 254, 515 |
| SinI | GGWCC | 1 cut(s) | 458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 212 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| SpeI | ACTAGT | 1 cut(s) | 281 |
| Sse9I | AATT | 2 cut(s) | 43, 420 |
| SseBI | AGGCCT | 1 cut(s) | 812 |
| SspMI | CTAG | 4 cut(s) | 267, 282, 887, 903 |
| StuI | AGGCCT | 1 cut(s) | 812 |
| StyD4I | CCNGG | 2 cut(s) | 697, 774 |
| StyI | CCWWGG | 1 cut(s) | 207 |
| TaaI | ACNGT | 5 cut(s) | 54, 60, 95, 304, 742 |
| TaiI | ACGT | 2 cut(s) | 799, 847 |
| TaqI | TCGA | 2 cut(s) | 86, 306 |
| TasI | AATT | 2 cut(s) | 43, 420 |
| TfiI | GAWTC | 1 cut(s) | 779 |
| Tru1I | TTAA | 2 cut(s) | 278, 668 |
| Tru9I | TTAA | 2 cut(s) | 278, 668 |
| TscAI | CASTG | 1 cut(s) | 515 |
| TseFI | GTSAC | 2 cut(s) | 54, 128 |
| TseI | GCWGC | 4 cut(s) | 150, 256, 514, 785 |
| Tsp45I | GTSAC | 2 cut(s) | 54, 128 |
| TspDTI | ATGAA | 4 cut(s) | 170, 180, 837, 876 |
| TspRI | CASTG | 1 cut(s) | 515 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 208 |
| VneI | GTGCAC | 1 cut(s) | 906 |
| VpaK11BI | GGWCC | 1 cut(s) | 458 |
| VspI | ATTAAT | 1 cut(s) | 668 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 507 |
| XspI | CTAG | 4 cut(s) | 267, 282, 887, 903 |