Rorug01G0261400

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000231
Physical Location & Seq
Reverse (-)
37069683 .. 37080351
10669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0261400.1

Sequence Viewer

Length: 957 bp
ATGCAAAGAATGAGCCATGAGATGCAATATATTGAATTCCTTGCAAAAATGAATTTTTCTCCTGATAGCAAATGGACAAGAATTCAGCAACTGGGTCGTGGGTCTTCTGGATCTGCCTTCGAAGGATGTTTTGAGAACGGATTCCACTTTGCTGTCAAAGTAGTTTCCTTGCATGATGAAGGAAGTCGAGGGAGGAACTGCGTCAATCAACTTGAACAGGAGATTGCTCTTTTGAGTCGGTTTAAACATCAGAACATAGTTCAATATTATTACTCATATAAGGATGAACTGAACCTTTATATGTTCATGGAGCTTGTACCTCGAGGATCCCTACGAAGCTTCTATCAGACAAATCCCGTTTCCTGTCTTCTCGTCTCCAAATACACAAAAGATATTCTTCATGGTCTTAAGTATCTTCATGACCACAATGTGATTCACAGGGACATAAAATGTGCAAATATATTGATAGATGCTCAAGGATCTGCAAAGCTTGCAGATTTGGGAGTGGGAAAGATAATCAGAATGAATGATATTAAATCTTTCCAGGGCAGCGCATTTTGGACAGCTCCTGAGGTTCAGAGTGCAATAAGGCATAACCAAGGTTATGGGATTTCAGCTGATATATGGAGCCTTGGTTGCACCGTATTGGAGATGTTAACCAGGAGTGTTCCTTACCATGATATGACACCGGAACAGGCATTATGGAGATCATTGAACGGGAAGCTCCCTGAGATTCCTGATTTTCTCTCAGTGGATGCACAAGATTTCATCCAGAAATGCCTAAAGATCAACCCAAATGATCGTCCCACTGCTTCAGAGCTCTTAGAGCACCCATTTGTCTTGAGGCGGCCAAGGTCGGGCAACATGCCAAGGCGAGGTTCCGTTCTTACGAACATTTTCAAAAAGTTGTCAAAAAATTTTGCAAATGTTTTTACGAATATAGTTTCTGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

318

Amino Acids

36.37

Weight (kDa)

8.93

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 26 - 280 1.4e-62 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 28 - 276 3.3e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 321
AciI CCGC 1 cut(s) 847
AclWI GGATC 4 cut(s) 118, 321, 334, 487
AcoI YGGCCR 1 cut(s) 848
AcsI RAATTY 4 cut(s) 35, 52, 81, 916
AcuI CTGAAG 1 cut(s) 798
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 2 cut(s) 857, 875
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 5 cut(s) 35, 215, 263, 715, 901
AjnI CCWGG 2 cut(s) 543, 659
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AluBI AGCT 7 cut(s) 313, 339, 490, 566, 617, 724, 820
AluI AGCT 7 cut(s) 313, 339, 490, 566, 617, 724, 820
Alw21I GWGCWC 2 cut(s) 822, 831
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 4 cut(s) 118, 321, 334, 487
AlwNI CAGNNNCTG 2 cut(s) 91, 569
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 1 cut(s) 848
ApeKI GCWGC 1 cut(s) 549
ApoI RAATTY 4 cut(s) 35, 52, 81, 916
Asp700I GAANNNNTTC 2 cut(s) 140, 896
AspLEI GCGC 1 cut(s) 554
AsuII TTCGAA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 321
AxyI CCTNAGG 1 cut(s) 570
BamHI GGATCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 2 cut(s) 96, 359
Bbv12I GWGCWC 2 cut(s) 822, 831
BbvI GCAGC 1 cut(s) 561
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 2 cut(s) 545, 661
BcoDI GTCTC 1 cut(s) 379
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 2 cut(s) 550, 848
BlsI GCNGC 2 cut(s) 551, 849
Bme1390I CCNGG 2 cut(s) 545, 661
BmeT110I CYCGRG 1 cut(s) 321
BmiI GGNNCC 3 cut(s) 328, 629, 880
BmrFI CCNGG 2 cut(s) 545, 661
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 12, 460, 745
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 96, 359
Bpu14I TTCGAA 1 cut(s) 120
BpuEI CTTGAG 2 cut(s) 459, 862
BsaJI CCNNGG 5 cut(s) 544, 598, 631, 851, 869
BsaWI WCCGGW 1 cut(s) 688
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 857, 875
Bse1I ACTGG 1 cut(s) 96
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 2 cut(s) 545, 661
BseDI CCNNGG 5 cut(s) 544, 598, 631, 851, 869
BseGI GGATG 4 cut(s) 131, 289, 760, 768
BseLI CCNNNNNNNGG 2 cut(s) 857, 875
BseMII CTCAG 3 cut(s) 561, 720, 762
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 561
BshFI GGCC 1 cut(s) 850
BsiHKAI GWGCWC 2 cut(s) 822, 831
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 689
BslFI GGGAC 2 cut(s) 455, 789
BslI CCNNNNNNNGG 2 cut(s) 857, 875
BsmAI GTCTC 1 cut(s) 379
BsmBI CGTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 455, 789
BsnI GGCC 1 cut(s) 850
BsoBI CYCGRG 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 822, 831
Bsp143I GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
BspACI CCGC 1 cut(s) 847
BspANI GGCC 1 cut(s) 850
BspCNI CTCAG 3 cut(s) 562, 721, 761
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 328, 629, 880
BspPI GGATC 4 cut(s) 118, 321, 334, 487
BspT104I TTCGAA 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 5 cut(s) 544, 598, 631, 851, 869
BssMI GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
BssT1I CCWWGG 4 cut(s) 598, 631, 851, 869
Bst2UI CCWGG 2 cut(s) 545, 661
Bst4CI ACNGT 1 cut(s) 643
BstAFI CTTAAG 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 4 cut(s) 570, 729, 748, 823
BstF5I GGATG 4 cut(s) 131, 289, 760, 768
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 7 cut(s) 113, 329, 482, 710, 789, 802, 952
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
BstMWI GCNNNNNNNGC 3 cut(s) 491, 636, 826
BstNI CCWGG 2 cut(s) 545, 661
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 2 cut(s) 543, 659
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 2 cut(s) 96, 359
BstX2I RGATCY 3 cut(s) 110, 326, 479
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 3 cut(s) 110, 326, 479
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 1 cut(s) 850
BtsCI GGATG 4 cut(s) 131, 289, 760, 768
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 2 cut(s) 756, 807
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 2 cut(s) 91, 569
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 554
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 317
CviAII CATG 7 cut(s) 17, 173, 307, 401, 419, 677, 865
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 4 cut(s) 570, 729, 748, 823
DpnI GATC 7 cut(s) 112, 328, 481, 709, 788, 801, 951
DpnII GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
DraI TTTAAA 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 4 cut(s) 598, 631, 851, 869
Eco24I GRGCYC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 798
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 820
EcoRI GAATTC 2 cut(s) 35, 81
EcoRII CCWGG 2 cut(s) 543, 659
EcoT14I CCWWGG 4 cut(s) 598, 631, 851, 869
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 4 cut(s) 598, 631, 851, 869
Esp3I CGTCTC 1 cut(s) 379
FaeI CATG 7 cut(s) 20, 176, 310, 404, 422, 680, 868
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 2 cut(s) 455, 789
FatI CATG 7 cut(s) 16, 172, 306, 400, 418, 676, 864
Fnu4HI GCNGC 2 cut(s) 550, 848
FokI GGATG 4 cut(s) 138, 296, 755, 767
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 2 cut(s) 550, 848
GlaI GCGC 1 cut(s) 553
GluI GCNGC 2 cut(s) 550, 848
HaeIII GGCC 1 cut(s) 850
HapII CCGG 1 cut(s) 689
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 554
Hin1II CATG 7 cut(s) 20, 176, 310, 404, 422, 680, 868
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HindIII AAGCTT 2 cut(s) 337, 488
HinfI GANTC 4 cut(s) 141, 235, 433, 733
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 1 cut(s) 689
Hpy166II GTNNAC 1 cut(s) 657
Hpy188I TCNGA 6 cut(s) 252, 348, 521, 579, 817, 949
Hpy188III TCNNGA 7 cut(s) 62, 108, 419, 569, 737, 772, 841
Hpy8I GTNNAC 1 cut(s) 657
HpyAV CCTTC 3 cut(s) 116, 127, 173
HpyCH4III ACNGT 1 cut(s) 643
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 636, 826
HpyF3I CTNAG 4 cut(s) 570, 729, 748, 823
Hsp92II CATG 7 cut(s) 20, 176, 310, 404, 422, 680, 868
HspAI GCGC 1 cut(s) 552
KspAI GTTAAC 1 cut(s) 657
Kzo9I GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
LmnI GCTCC 4 cut(s) 310, 571, 627, 729
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 3 cut(s) 12, 460, 745
MalI GATC 7 cut(s) 112, 328, 481, 709, 788, 801, 951
MboI GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
MboII GAAGA 4 cut(s) 96, 359, 389, 407
MflI RGATCY 3 cut(s) 110, 326, 479
MhlI GDGCHC 2 cut(s) 822, 831
MluCI AATT 4 cut(s) 35, 52, 81, 916
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 7 cut(s) 182, 186, 317, 330, 565, 837, 869
MroXI GAANNNNTTC 2 cut(s) 140, 896
MseI TTAA 4 cut(s) 243, 408, 534, 656
MspA1I CMGCKG 1 cut(s) 617
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 2 cut(s) 545, 661
MssI GTTTAAAC 1 cut(s) 244
MvaI CCWGG 2 cut(s) 545, 661
MwoI GCNNNNNNNGC 3 cut(s) 491, 636, 826
NdeII GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
NlaIII CATG 7 cut(s) 20, 176, 310, 404, 422, 680, 868
NlaIV GGNNCC 3 cut(s) 328, 629, 880
NspI RCATGY 1 cut(s) 868
NspV TTCGAA 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 321
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 2 cut(s) 140, 896
PfeI GAWTC 3 cut(s) 141, 433, 733
PkrI GCNGC 2 cut(s) 551, 849
PleI GAGTC 1 cut(s) 243
PmeI GTTTAAAC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 543, 659
PspGI CCWGG 2 cut(s) 543, 659
PspN4I GGNNCC 3 cut(s) 328, 629, 880
PspXI VCTCGAGB 1 cut(s) 321
PstNI CAGNNNCTG 2 cut(s) 91, 569
PsuI RGATCY 3 cut(s) 110, 326, 479
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SacI GAGCTC 1 cut(s) 822
SaqAI TTAA 4 cut(s) 243, 408, 534, 656
SatI GCNGC 2 cut(s) 550, 848
Sau3AI GATC 7 cut(s) 110, 326, 479, 707, 786, 799, 949
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 545, 661
SduI GDGCHC 2 cut(s) 822, 831
SfaNI GCATC 3 cut(s) 12, 460, 745
Sfr274I CTCGAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 321
SmlI CTYRAG 4 cut(s) 321, 407, 474, 841
SmoI CTYRAG 4 cut(s) 321, 407, 474, 841
Sse9I AATT 4 cut(s) 35, 52, 81, 916
SsiI CCGC 1 cut(s) 847
SspI AATATT 1 cut(s) 266
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 2 cut(s) 543, 659
StyI CCWWGG 4 cut(s) 598, 631, 851, 869
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 3 cut(s) 120, 187, 322
TasI AATT 4 cut(s) 35, 52, 81, 916
TauI GCSGC 1 cut(s) 850
TfiI GAWTC 3 cut(s) 141, 433, 733
Tru1I TTAA 4 cut(s) 243, 408, 534, 656
Tru9I TTAA 4 cut(s) 243, 408, 534, 656
TscAI CASTG 2 cut(s) 756, 814
TseI GCWGC 1 cut(s) 549
TspDTI ATGAA 8 cut(s) 65, 192, 295, 300, 389, 407, 539, 757
TspGWI ACGGA 2 cut(s) 153, 871
TspRI CASTG 2 cut(s) 756, 814
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 4 cut(s) 35, 52, 81, 916
XceI RCATGY 1 cut(s) 868
XhoI CTCGAG 1 cut(s) 321
XmnI GAANNNNTTC 2 cut(s) 140, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.