Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

30069193 .. 30069852

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACCCTCAAAGAAACATACAAGAACTATCGTCCAGTAAGAGTGATCGTAAAAAGGTTCGGGATCGAAAGAAGAATTTAATCAAGAAAGCCGAGGAGCTTTCAAAACTTTGTGGTGTTGATGTATGCTTGATCCTCTACCAACGTCAAAGTACTGTAGCAGAGACTTGGCCCCAAGATCCTGCGCAAGTCAAACGCATTATCACTGGGTACAAGGCAAACCCGGCAATCAGAGATGCTAGCATTCCTTCATTGGAGACAAGGGGTTTGGCAGAAACCAAGCCTCGAAAGTCAGATAGTGGTCGTGAGAATGTTATTAATAATTCCGATGAGGAGAGGGAGATTTTGTACCCGACATGGGATGATCGATTAGATTACTGTTCTGAGGACGAATTGTTTAGACTGGTTGCTTCCTTGGATGCAAAGATAGAAGCTTCAACAAAGAGGATTGATTCACTATCGATGAAAAGCTGTAGCCGTTTTGTGACCCCAAAAAACAAAAACAGCAAAGCTGGTGCACTTGATCATCATGACAAGGTGAATTCGAACTTGAACTTGGTCCCTTTTCATGAGATTAATGATCTTGATGATCCAAGATCATCCAGAAACTACAGTAGTACTTCAACCATGCAATTCAGGAGGTCTCCTTATATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

219

Amino Acids

25.08

Weight (kDa)

8.96

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	23 - 51	1.4e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
AclWI	GGATC	4 cut(s)	72, 127, 173, 584
AcsI	RAATTY	2 cut(s)	76, 541
AfaI	GTAC	4 cut(s)	154, 212, 350, 619
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	105, 438, 553, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	4 cut(s)	100, 434, 471, 512
AluI	AGCT	4 cut(s)	100, 434, 471, 512
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	3 cut(s)	158, 251, 648
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	4 cut(s)	72, 127, 173, 584
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	516
ApoI	RAATTY	2 cut(s)	76, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AseI	ATTAAT	2 cut(s)	318, 576
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	4, 171, 559
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	4, 559
BaeGI	GKGCMC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	158, 251, 648
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	3 cut(s)	156, 472, 610
BmcAI	AGTACT	2 cut(s)	154, 619
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	4, 559
BmgT120I	GGNCC	3 cut(s)	4, 171, 559
BmiI	GGNNCC	3 cut(s)	6, 173, 561
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	226, 409
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	224
Bsa29I	ATCGAT	2 cut(s)	367, 461
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	93, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	36, 211, 408
BseCI	ATCGAT	2 cut(s)	367, 461
BseDI	CCNNGG	2 cut(s)	93, 414
BseGI	GGATG	3 cut(s)	367, 424, 599
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	3 cut(s)	36, 211, 408
BseRI	GAGGAG	2 cut(s)	110, 347
BseSI	GKGCMC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	2 cut(s)	367, 461
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	3 cut(s)	158, 251, 648
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	2 cut(s)	367, 461
BspHI	TCATGA	2 cut(s)	529, 568
BspLI	GGNNCC	3 cut(s)	6, 173, 561
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	4 cut(s)	72, 127, 173, 584
BspT104I	TTCGAA	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	36, 211, 408
BssECI	CCNNGG	2 cut(s)	93, 414
BssMI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	157, 380, 614
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	367, 424, 599
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	9 cut(s)	49, 67, 135, 181, 367, 526, 583, 592, 599
BstMAI	GTCTC	3 cut(s)	158, 251, 648
BstMBI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	3 cut(s)	156, 472, 610
BstSLI	GKGCMC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	367, 461
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	2 cut(s)	367, 461
BtsCI	GGATG	3 cut(s)	367, 424, 599
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	2 cut(s)	529, 568
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	4, 171, 559
ClaI	ATCGAT	2 cut(s)	367, 461
Csp6I	GTAC	4 cut(s)	153, 211, 349, 618
CviAII	CATG	4 cut(s)	357, 530, 569, 628
CviJI	RGCY	8 cut(s)	92, 100, 172, 283, 434, 471, 477, 512
CviKI_1	RGCY	8 cut(s)	92, 100, 172, 283, 434, 471, 477, 512
CviQI	GTAC	4 cut(s)	153, 211, 349, 618
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	9 cut(s)	48, 66, 134, 180, 366, 525, 582, 591, 598
DpnII	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	4, 559
EcoRI	GAATTC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	4 cut(s)	360, 533, 572, 631
FaiI	YATR	8 cut(s)	20, 127, 358, 531, 570, 629, 651, 653
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	4 cut(s)	356, 529, 568, 627
FbaI	TGATCA	1 cut(s)	523
FokI	GGATG	3 cut(s)	374, 431, 586
FspBI	CTAG	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	360, 533, 572, 631
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	4 cut(s)	233, 295, 328, 385
Hpy188III	TCNNGA	8 cut(s)	62, 85, 305, 530, 569, 584, 603, 637
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	157, 380, 614
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	422, 518, 631, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	360, 533, 572, 631
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	49, 192, 195, 237, 389, 498, 616, 622
LweI	GCATC	2 cut(s)	226, 409
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	9 cut(s)	48, 66, 134, 180, 366, 525, 582, 591, 598
MboI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	5 cut(s)	76, 322, 392, 541, 632
MnlI	CCTC	9 cut(s)	18, 88, 146, 294, 325, 330, 379, 438, 633
MseI	TTAA	3 cut(s)	80, 318, 576
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	4 cut(s)	360, 533, 572, 631
NlaIV	GGNNCC	3 cut(s)	6, 173, 561
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	545
PagI	TCATGA	2 cut(s)	529, 568
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	452
PshBI	ATTAAT	2 cut(s)	318, 576
PspN4I	GGNNCC	3 cut(s)	6, 173, 561
PspPI	GGNCC	3 cut(s)	4, 171, 559
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	4 cut(s)	154, 212, 350, 619
RsaNI	GTAC	4 cut(s)	153, 211, 349, 618
SaqAI	TTAA	3 cut(s)	80, 318, 576
Sau3AI	GATC	9 cut(s)	46, 64, 132, 178, 364, 523, 580, 589, 596
Sau96I	GGNCC	3 cut(s)	4, 171, 559
ScaI	AGTACT	2 cut(s)	154, 619
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	8 cut(s)	60, 102, 148, 436, 473, 514, 540, 644
SfaNI	GCATC	2 cut(s)	226, 409
SfcI	CTRYAG	3 cut(s)	156, 472, 610
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	2 cut(s)	4, 559
Sse9I	AATT	5 cut(s)	76, 322, 392, 541, 632
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	157, 380, 614
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	5 cut(s)	67, 286, 367, 461, 545
TasI	AATT	5 cut(s)	76, 322, 392, 541, 632
TatI	WGTACW	2 cut(s)	152, 617
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	80, 318, 576
Tru9I	TTAA	3 cut(s)	80, 318, 576
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	240, 479, 557
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	4, 559
VspI	ATTAAT	2 cut(s)	318, 576
XapI	RAATTY	2 cut(s)	76, 541
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	2 cut(s)	154, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.