Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

10742741 .. 10743016

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0069300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGTCTGAAGGCAGAAAGCGAGTGGCTGTGGGCAATGACAAAGAGGAACAGGGGCTGATGGCGAGGCTGTCACAGTCGACGGTGGTGCAGAAGGCCAAGGGGTTGGCAAACGACGGGTCGTATGTGGCGAAGAAGCTGGTGAAGAGCACGGGGAAGGCGGCGTGGATCTTCGGCACGACGTTTCTGATCCTGGTCGTCCCTATCATGGTCCAGACGGACCGAGAGCAGCAGGTCTTCGAATATGAGTCGCAGCAGGCCATCCTCGGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

91

Amino Acids

9.97

Weight (kDa)

9.4

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tom22	PF04281	37 - 86	9.9e-08	Mitochondrial import receptor subunit Tom22

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	176, 184
AcoI	YGGCCR	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	176, 184
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	3 cut(s)	96, 258, 268
ApeKI	GCWGC	2 cut(s)	229, 253
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspS9I	GGNCC	2 cut(s)	211, 220
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	211, 220
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	241, 265
BccI	CCATC	2 cut(s)	55, 269
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	162, 230, 254
BlsI	GCNGC	3 cut(s)	163, 231, 255
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	211, 220
BmgT120I	GGNCC	2 cut(s)	211, 220
BmrFI	CCNGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	99, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	99, 265
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	241, 265
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	3 cut(s)	98, 260, 270
BsiHKAI	GWGCWC	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	98, 260, 270
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	168, 189
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	3 cut(s)	98, 260, 270
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	176, 184
BspQI	GCTCTTC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	99, 265
BssMI	GATC	2 cut(s)	168, 189
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	78, 85
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	171, 192
BstMBI	GATC	2 cut(s)	168, 189
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	241, 265
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	98, 260, 270
BtsCI	GGATG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	211, 220
CpoI	CGGWCCG	1 cut(s)	220
CspI	CGGWCCG	1 cut(s)	220
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	7 cut(s)	29, 58, 70, 98, 139, 260, 270
CviKI_1	RGCY	7 cut(s)	29, 58, 70, 98, 139, 260, 270
DpnI	GATC	2 cut(s)	170, 191
DpnII	GATC	2 cut(s)	168, 189
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	211, 220
Eco57I	CTGAAG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	211
FaiI	YATR	3 cut(s)	126, 209, 246
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	162, 230, 254
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	162, 230, 254
GluI	GCNGC	3 cut(s)	162, 230, 254
HaeIII	GGCC	3 cut(s)	98, 260, 270
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	10, 189
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	3 cut(s)	85, 119, 184
HpyAV	CCTTC	3 cut(s)	5, 88, 151
HpyCH4III	ACNGT	2 cut(s)	78, 85
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	182
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	168, 189
LguI	GCTCTTC	1 cut(s)	140
LpnPI	CCDG	7 cut(s)	38, 125, 179, 206, 218, 227, 242
Lsp1109I	GCAGC	2 cut(s)	241, 265
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	2 cut(s)	170, 191
MboI	GATC	2 cut(s)	168, 189
MboII	GAAGA	4 cut(s)	145, 157, 163, 229
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	40, 60, 275
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	168, 189
NlaIII	CATG	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	163, 231, 255
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	211, 220
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	168
Rsr2I	CGGWCCG	1 cut(s)	220
RsrII	CGGWCCG	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	140
SatI	GCNGC	3 cut(s)	162, 230, 254
Sau3AI	GATC	2 cut(s)	168, 189
Sau96I	GGNCC	2 cut(s)	211, 220
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	3 cut(s)	141, 185, 237
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	211, 220
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	78, 85
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	80, 240
TaqII	GACCGA	1 cut(s)	237
TauI	GCSGC	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	2 cut(s)	229, 253
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	211, 220
XmiI	GTMKAC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.