Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005666.1

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

299 .. 925

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005666.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggaaccacaaactctgcaactaatggagttacaaacccagcaacaaatggaattacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtaaccggtgggctcccacaccgcctcaactaagaatcctcaagggcctttactatgataagggttttaagtacccaactccagagcagatttctttcttcatcaacatggaaccacgaactctgcaactaatggagttacaaacccagcaacaaatcgaggatggaggaaacaaccaagcagccgggactaataaccggtgggctcccacaccgcctcaactaagaatcctcaagggcctttactatgataagggttttaagtacccaactccagagcagattcaagagatctgcctccatctgaaacagtatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaatttcggaacgttccggttggtggatctctcaatctcaattttggatctactagttctactgatgatggtagatccattgatctaaactttggctcacgtgtcggctatggtgttgatggatcgatcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

209

Amino Acids

23.84

Weight (kDa)

5.93

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
AciI	CCGC	2 cut(s)	131, 323
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	4 cut(s)	529, 550, 564, 625
AcsI	RAATTY	1 cut(s)	497
AcvI	CACGTG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	182, 374
AfiI	CCNNNNNNNGG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	595
AgeI	ACCGGT	2 cut(s)	114, 306
AgsI	TTSAA	2 cut(s)	395, 493
AhlI	ACTAGT	1 cut(s)	548
AlwI	GGATC	4 cut(s)	529, 550, 564, 625
AoxI	GGCC	2 cut(s)	154, 346
ApeKI	GCWGC	2 cut(s)	98, 290
ApoI	RAATTY	1 cut(s)	497
AsiGI	ACCGGT	2 cut(s)	114, 306
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	154, 346
AsuC2I	CCSGG	2 cut(s)	103, 295
BanII	GRGCYC	2 cut(s)	124, 316
BauI	CACGAG	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	110, 302
BccI	CCATC	4 cut(s)	266, 417, 557, 608
BcnI	CCSGG	2 cut(s)	103, 295
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	1 cut(s)	549
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	2 cut(s)	99, 291
BlsI	GCNGC	2 cut(s)	100, 292
Bme1390I	CCNGG	2 cut(s)	103, 295
BmgT120I	GGNCC	2 cut(s)	154, 346
BmiI	GGNNCC	5 cut(s)	6, 123, 222, 315, 458
BmrFI	CCNGG	2 cut(s)	103, 295
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	439
BpmI	CTGGAG	2 cut(s)	174, 366
BpuEI	CTTGAG	3 cut(s)	134, 326, 452
BpuMI	CCSGG	2 cut(s)	103, 295
Bsa29I	ATCGAT	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	3 cut(s)	114, 306, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse118I	RCCGGY	2 cut(s)	114, 306
BseCI	ATCGAT	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	90, 277
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	110, 302
BseYI	CCCAGC	3 cut(s)	39, 63, 255
BshFI	GGCC	2 cut(s)	156, 348
BshTI	ACCGGT	2 cut(s)	114, 306
BshVI	ATCGAT	1 cut(s)	620
BsiSI	CCGG	5 cut(s)	102, 115, 294, 307, 512
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	2 cut(s)	156, 348
Bsp1286I	GDGCHC	2 cut(s)	124, 316
Bsp143I	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
BspACI	CCGC	2 cut(s)	131, 323
BspANI	GGCC	2 cut(s)	156, 348
BspDI	ATCGAT	1 cut(s)	620
BspLI	GGNNCC	5 cut(s)	6, 123, 222, 315, 458
BspPI	GGATC	4 cut(s)	529, 550, 564, 625
BsrFI	RCCGGY	2 cut(s)	114, 306
BssAI	RCCGGY	2 cut(s)	114, 306
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	596
BstDEI	CTNAG	2 cut(s)	140, 332
BstF5I	GGATG	2 cut(s)	90, 277
BstKTI	GATC	8 cut(s)	402, 432, 524, 545, 572, 580, 620, 624
BstMBI	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
BstSCI	CCNGG	2 cut(s)	101, 293
BstV1I	GCAGC	2 cut(s)	110, 302
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	4 cut(s)	399, 521, 542, 569
BstYI	RGATCY	4 cut(s)	399, 521, 542, 569
Bsu15I	ATCGAT	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	156, 348
BsuTUI	ATCGAT	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	90, 277
Cfr10I	RCCGGY	2 cut(s)	114, 306
Cfr13I	GGNCC	2 cut(s)	154, 346
ClaI	ATCGAT	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	181, 373
CspAI	ACCGGT	2 cut(s)	114, 306
CviAII	CATG	2 cut(s)	217, 625
CviQI	GTAC	2 cut(s)	181, 373
DdeI	CTNAG	2 cut(s)	140, 332
DpnI	GATC	8 cut(s)	401, 431, 523, 544, 571, 579, 619, 623
DpnII	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eco24I	GRGCYC	2 cut(s)	124, 316
Eco72I	CACGTG	1 cut(s)	596
EcoO109I	RGGNCCY	2 cut(s)	154, 346
EcoT38I	GRGCYC	2 cut(s)	124, 316
FaeI	CATG	1 cut(s)	220
FaiI	YATR	6 cut(s)	165, 218, 357, 423, 606, 626
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	99, 291
FokI	GGATG	2 cut(s)	77, 284
FriOI	GRGCYC	2 cut(s)	124, 316
Fsp4HI	GCNGC	2 cut(s)	99, 291
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	2 cut(s)	99, 291
GsaI	CCCAGC	3 cut(s)	43, 67, 259
GsuI	CTGGAG	2 cut(s)	174, 366
HaeIII	GGCC	2 cut(s)	156, 348
HapII	CCGG	5 cut(s)	102, 115, 294, 307, 512
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	3 cut(s)	144, 336, 391
HpaII	CCGG	5 cut(s)	102, 115, 294, 307, 512
Hpy188I	TCNGA	2 cut(s)	414, 504
Hpy188III	TCNNGA	5 cut(s)	191, 383, 395, 460, 476
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	3 cut(s)	444, 507, 595
HpyCH4V	TGCA	2 cut(s)	19, 235
HpyF3I	CTNAG	2 cut(s)	140, 332
HpySE526I	ACGT	3 cut(s)	444, 507, 595
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
LmnI	GCTCC	2 cut(s)	127, 319
Lsp1109I	GCAGC	2 cut(s)	110, 302
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	3 cut(s)	444, 507, 595
MaeIII	GTNAC	3 cut(s)	30, 110, 246
MalI	GATC	8 cut(s)	401, 431, 523, 544, 571, 579, 619, 623
MboI	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
MboII	GAAGA	2 cut(s)	199, 439
MflI	RGATCY	4 cut(s)	399, 521, 542, 569
MhlI	GDGCHC	2 cut(s)	124, 316
MluCI	AATT	3 cut(s)	53, 497, 535
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	2 cut(s)	177, 369
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	5 cut(s)	102, 115, 294, 307, 512
MspR9I	CCNGG	2 cut(s)	103, 295
NciI	CCSGG	2 cut(s)	103, 295
NdeII	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	5 cut(s)	6, 123, 222, 315, 458
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	144, 336, 391
PinAI	ACCGGT	2 cut(s)	114, 306
PkrI	GCNGC	2 cut(s)	100, 292
PmaCI	CACGTG	1 cut(s)	596
PmlI	CACGTG	1 cut(s)	596
Ppu21I	YACGTR	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	507
PspCI	CACGTG	1 cut(s)	596
PspFI	CCCAGC	3 cut(s)	39, 63, 255
PspN4I	GGNNCC	5 cut(s)	6, 123, 222, 315, 458
PspPI	GGNCC	2 cut(s)	154, 346
PsuI	RGATCY	4 cut(s)	399, 521, 542, 569
RsaI	GTAC	2 cut(s)	182, 374
RsaNI	GTAC	2 cut(s)	181, 373
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	177, 369
SatI	GCNGC	2 cut(s)	99, 291
Sau3AI	GATC	8 cut(s)	399, 429, 521, 542, 569, 577, 617, 621
Sau96I	GGNCC	2 cut(s)	154, 346
ScrFI	CCNGG	2 cut(s)	103, 295
SduI	GDGCHC	2 cut(s)	124, 316
SetI	ASST	4 cut(s)	447, 468, 510, 598
SfaNI	GCATC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	149, 341, 467
SmoI	CTYRAG	3 cut(s)	149, 341, 467
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	3 cut(s)	53, 497, 535
SsiI	CCGC	2 cut(s)	131, 323
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	101, 293
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	3 cut(s)	447, 510, 598
TaqI	TCGA	3 cut(s)	267, 432, 620
TasI	AATT	3 cut(s)	53, 497, 535
TfiI	GAWTC	3 cut(s)	144, 336, 391
Tru1I	TTAA	2 cut(s)	177, 369
Tru9I	TTAA	2 cut(s)	177, 369
TseI	GCWGC	2 cut(s)	98, 290
TspDTI	ATGAA	1 cut(s)	199
XapI	RAATTY	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.