Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF599 | PF04654 | 11 - 215 | 7.8e-77 | Protein of unknown function, DUF599 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 616 |
| AciI | CCGC | 3 cut(s) | 264, 272, 308 |
| AclWI | GGATC | 2 cut(s) | 232, 244 |
| AcoI | YGGCCR | 2 cut(s) | 237, 273 |
| AcsI | RAATTY | 1 cut(s) | 691 |
| AcyI | GRCGYC | 1 cut(s) | 318 |
| AfaI | GTAC | 3 cut(s) | 97, 293, 488 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 327 |
| AflIII | ACRYGT | 1 cut(s) | 489 |
| AjiI | CACGTC | 1 cut(s) | 246 |
| AjnI | CCWGG | 2 cut(s) | 189, 267 |
| AluBI | AGCT | 2 cut(s) | 62, 499 |
| AluI | AGCT | 2 cut(s) | 62, 499 |
| Alw21I | GWGCWC | 1 cut(s) | 605 |
| Alw26I | GTCTC | 2 cut(s) | 101, 157 |
| AlwI | GGATC | 2 cut(s) | 232, 244 |
| Ama87I | CYCGRG | 1 cut(s) | 482 |
| AoxI | GGCC | 5 cut(s) | 237, 265, 273, 581, 653 |
| ApeKI | GCWGC | 3 cut(s) | 261, 285, 551 |
| ApoI | RAATTY | 1 cut(s) | 691 |
| AspA2I | CCTAGG | 1 cut(s) | 43 |
| AspS9I | GGNCC | 2 cut(s) | 460, 581 |
| AsuHPI | GGTGA | 1 cut(s) | 367 |
| AsuII | TTCGAA | 1 cut(s) | 208 |
| AvaI | CYCGRG | 1 cut(s) | 482 |
| AvaII | GGWCC | 1 cut(s) | 460 |
| AvrII | CCTAGG | 1 cut(s) | 43 |
| AxyI | CCTNAGG | 1 cut(s) | 456 |
| BalI | TGGCCA | 1 cut(s) | 239 |
| BanI | GGYRCC | 1 cut(s) | 616 |
| Bbv12I | GWGCWC | 1 cut(s) | 605 |
| BbvI | GCAGC | 3 cut(s) | 248, 297, 563 |
| BccI | CCATC | 1 cut(s) | 422 |
| BceAI | ACGGC | 2 cut(s) | 260, 305 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 74, 108 |
| BciT130I | CCWGG | 2 cut(s) | 191, 269 |
| BclI | TGATCA | 2 cut(s) | 162, 658 |
| BcoDI | GTCTC | 2 cut(s) | 101, 157 |
| BfaI | CTAG | 2 cut(s) | 44, 503 |
| BisI | GCNGC | 6 cut(s) | 262, 265, 273, 286, 308, 552 |
| BlnI | CCTAGG | 1 cut(s) | 43 |
| BlsI | GCNGC | 6 cut(s) | 263, 266, 274, 287, 309, 553 |
| Bme1390I | CCNGG | 2 cut(s) | 191, 269 |
| Bme18I | GGWCC | 1 cut(s) | 460 |
| BmeT110I | CYCGRG | 1 cut(s) | 482 |
| BmgBI | CACGTC | 1 cut(s) | 246 |
| BmgT120I | GGNCC | 2 cut(s) | 460, 581 |
| BmiI | GGNNCC | 3 cut(s) | 39, 462, 618 |
| BmrFI | CCNGG | 2 cut(s) | 191, 269 |
| BmsI | GCATC | 1 cut(s) | 670 |
| BpmI | CTGGAG | 1 cut(s) | 456 |
| Bpu14I | TTCGAA | 1 cut(s) | 208 |
| BsaAI | YACGTR | 3 cut(s) | 291, 364, 490 |
| BsaHI | GRCGYC | 1 cut(s) | 318 |
| BsaI | GGTCTC | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 2 cut(s) | 43, 612 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 327 |
| Bse118I | RCCGGY | 1 cut(s) | 583 |
| Bse1I | ACTGG | 1 cut(s) | 473 |
| Bse21I | CCTNAGG | 1 cut(s) | 456 |
| Bse3DI | GCAATG | 1 cut(s) | 165 |
| BseBI | CCWGG | 2 cut(s) | 191, 269 |
| BseDI | CCNNGG | 2 cut(s) | 43, 612 |
| BseGI | GGATG | 4 cut(s) | 31, 186, 438, 685 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BseMI | GCAATG | 1 cut(s) | 165 |
| BseMII | CTCAG | 2 cut(s) | 96, 470 |
| BseNI | ACTGG | 1 cut(s) | 473 |
| BseX3I | CGGCCG | 1 cut(s) | 273 |
| BseXI | GCAGC | 3 cut(s) | 248, 297, 563 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BshFI | GGCC | 5 cut(s) | 239, 267, 275, 583, 655 |
| BshNI | GGYRCC | 1 cut(s) | 616 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 1 cut(s) | 605 |
| BsiHKCI | CYCGRG | 1 cut(s) | 482 |
| BsiSI | CCGG | 1 cut(s) | 584 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BsmAI | GTCTC | 2 cut(s) | 101, 157 |
| BsnI | GGCC | 5 cut(s) | 239, 267, 275, 583, 655 |
| Bso31I | GGTCTC | 1 cut(s) | 157 |
| BsoBI | CYCGRG | 1 cut(s) | 482 |
| Bsp119I | TTCGAA | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 1 cut(s) | 605 |
| Bsp143I | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| Bsp19I | CCATGG | 1 cut(s) | 612 |
| BspACI | CCGC | 3 cut(s) | 264, 272, 308 |
| BspANI | GGCC | 5 cut(s) | 239, 267, 275, 583, 655 |
| BspCNI | CTCAG | 2 cut(s) | 97, 469 |
| BspLI | GGNNCC | 3 cut(s) | 39, 462, 618 |
| BspPI | GGATC | 2 cut(s) | 232, 244 |
| BspT104I | TTCGAA | 1 cut(s) | 208 |
| BspT107I | GGYRCC | 1 cut(s) | 616 |
| BspTNI | GGTCTC | 1 cut(s) | 157 |
| BsrDI | GCAATG | 1 cut(s) | 165 |
| BsrFI | RCCGGY | 1 cut(s) | 583 |
| BsrI | ACTGG | 1 cut(s) | 473 |
| BssAI | RCCGGY | 1 cut(s) | 583 |
| BssECI | CCNNGG | 2 cut(s) | 43, 612 |
| BssMI | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| BssNI | GRCGYC | 1 cut(s) | 318 |
| BssT1I | CCWWGG | 2 cut(s) | 43, 612 |
| Bst2UI | CCWGG | 2 cut(s) | 191, 269 |
| Bst4CI | ACNGT | 1 cut(s) | 529 |
| Bst6I | CTCTTC | 2 cut(s) | 210, 392 |
| BstACI | GRCGYC | 1 cut(s) | 318 |
| BstBAI | YACGTR | 3 cut(s) | 291, 364, 490 |
| BstBI | TTCGAA | 1 cut(s) | 208 |
| BstDEI | CTNAG | 2 cut(s) | 105, 456 |
| BstDSI | CCRYGG | 1 cut(s) | 612 |
| BstF5I | GGATG | 4 cut(s) | 31, 186, 438, 685 |
| BstKTI | GATC | 5 cut(s) | 165, 219, 227, 252, 661 |
| BstMAI | GTCTC | 2 cut(s) | 101, 157 |
| BstMBI | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 294, 652 |
| BstNI | CCWGG | 2 cut(s) | 191, 269 |
| BstSCI | CCNGG | 2 cut(s) | 189, 267 |
| BstV1I | GCAGC | 3 cut(s) | 248, 297, 563 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 613 |
| BstZI | CGGCCG | 1 cut(s) | 273 |
| Bsu36I | CCTNAGG | 1 cut(s) | 456 |
| BsuRI | GGCC | 5 cut(s) | 239, 267, 275, 583, 655 |
| BtgI | CCRYGG | 1 cut(s) | 612 |
| BtrI | CACGTC | 1 cut(s) | 246 |
| BtsCI | GGATG | 4 cut(s) | 31, 186, 438, 685 |
| BtsIMutI | CAGTG | 1 cut(s) | 480 |
| Cfr10I | RCCGGY | 1 cut(s) | 583 |
| Cfr13I | GGNCC | 2 cut(s) | 460, 581 |
| CseI | GACGC | 1 cut(s) | 326 |
| Csp6I | GTAC | 3 cut(s) | 96, 292, 487 |
| CviAII | CATG | 7 cut(s) | 71, 220, 335, 346, 397, 613, 676 |
| CviQI | GTAC | 3 cut(s) | 96, 292, 487 |
| DdeI | CTNAG | 2 cut(s) | 105, 456 |
| DpnI | GATC | 5 cut(s) | 164, 218, 226, 251, 660 |
| DpnII | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| EaeI | YGGCCR | 2 cut(s) | 237, 273 |
| EagI | CGGCCG | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 2 cut(s) | 210, 392 |
| EarI | CTCTTC | 2 cut(s) | 210, 392 |
| EclXI | CGGCCG | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 2 cut(s) | 43, 612 |
| Eco147I | AGGCCT | 1 cut(s) | 655 |
| Eco31I | GGTCTC | 1 cut(s) | 157 |
| Eco47I | GGWCC | 1 cut(s) | 460 |
| Eco52I | CGGCCG | 1 cut(s) | 273 |
| Eco81I | CCTNAGG | 1 cut(s) | 456 |
| Eco88I | CYCGRG | 1 cut(s) | 482 |
| EcoO109I | RGGNCCY | 1 cut(s) | 460 |
| EcoRII | CCWGG | 2 cut(s) | 189, 267 |
| EcoT14I | CCWWGG | 2 cut(s) | 43, 612 |
| ErhI | CCWWGG | 2 cut(s) | 43, 612 |
| FaeI | CATG | 7 cut(s) | 74, 223, 338, 349, 400, 616, 679 |
| FatI | CATG | 7 cut(s) | 70, 219, 334, 345, 396, 612, 675 |
| FbaI | TGATCA | 2 cut(s) | 162, 658 |
| Fnu4HI | GCNGC | 6 cut(s) | 262, 265, 273, 286, 308, 552 |
| FokI | GGATG | 4 cut(s) | 38, 173, 425, 692 |
| Fsp4HI | GCNGC | 6 cut(s) | 262, 265, 273, 286, 308, 552 |
| FspBI | CTAG | 2 cut(s) | 44, 503 |
| GluI | GCNGC | 6 cut(s) | 262, 265, 273, 286, 308, 552 |
| GsuI | CTGGAG | 1 cut(s) | 456 |
| HaeIII | GGCC | 5 cut(s) | 239, 267, 275, 583, 655 |
| HapII | CCGG | 1 cut(s) | 584 |
| HgaI | GACGC | 1 cut(s) | 326 |
| Hin1I | GRCGYC | 1 cut(s) | 318 |
| Hin1II | CATG | 7 cut(s) | 74, 223, 338, 349, 400, 616, 679 |
| HinfI | GANTC | 2 cut(s) | 31, 202 |
| HpaII | CCGG | 1 cut(s) | 584 |
| HphI | GGTGA | 1 cut(s) | 367 |
| Hpy166II | GTNNAC | 1 cut(s) | 436 |
| Hpy188I | TCNGA | 5 cut(s) | 54, 496, 522, 663, 697 |
| Hpy188III | TCNNGA | 4 cut(s) | 199, 458, 503, 687 |
| Hpy8I | GTNNAC | 1 cut(s) | 436 |
| Hpy99I | CGWCG | 2 cut(s) | 250, 320 |
| HpyAV | CCTTC | 2 cut(s) | 263, 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 529 |
| HpyCH4IV | ACGT | 4 cut(s) | 245, 290, 363, 489 |
| HpyCH4V | TGCA | 1 cut(s) | 158 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 294, 652 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 456 |
| HpySE526I | ACGT | 4 cut(s) | 245, 290, 363, 489 |
| Hsp92I | GRCGYC | 1 cut(s) | 318 |
| Hsp92II | CATG | 7 cut(s) | 74, 223, 338, 349, 400, 616, 679 |
| Ksp22I | TGATCA | 2 cut(s) | 162, 658 |
| Kzo9I | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| LmnI | GCTCC | 2 cut(s) | 496, 608 |
| Lsp1109I | GCAGC | 3 cut(s) | 248, 297, 563 |
| LweI | GCATC | 1 cut(s) | 670 |
| MaeI | CTAG | 2 cut(s) | 44, 503 |
| MaeII | ACGT | 4 cut(s) | 245, 290, 363, 489 |
| MaeIII | GTNAC | 4 cut(s) | 364, 401, 475, 512 |
| MalI | GATC | 5 cut(s) | 164, 218, 226, 251, 660 |
| MboI | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| MboII | GAAGA | 6 cut(s) | 150, 153, 193, 197, 313, 379 |
| MhlI | GDGCHC | 1 cut(s) | 605 |
| MlsI | TGGCCA | 1 cut(s) | 239 |
| MluCI | AATT | 2 cut(s) | 631, 691 |
| MluNI | TGGCCA | 1 cut(s) | 239 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MmeI | TCCRAC | 1 cut(s) | 474 |
| MnlI | CCTC | 6 cut(s) | 128, 365, 395, 452, 465, 570 |
| Mox20I | TGGCCA | 1 cut(s) | 239 |
| MscI | TGGCCA | 1 cut(s) | 239 |
| MslI | CAYNNNNRTG | 2 cut(s) | 218, 611 |
| Msp20I | TGGCCA | 1 cut(s) | 239 |
| MspA1I | CMGCKG | 2 cut(s) | 62, 310 |
| MspI | CCGG | 1 cut(s) | 584 |
| MspR9I | CCNGG | 2 cut(s) | 191, 269 |
| MvaI | CCWGG | 2 cut(s) | 191, 269 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 294, 652 |
| NcoI | CCATGG | 1 cut(s) | 612 |
| NdeII | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| NlaIII | CATG | 7 cut(s) | 74, 223, 338, 349, 400, 616, 679 |
| NlaIV | GGNNCC | 3 cut(s) | 39, 462, 618 |
| NmuCI | GTSAC | 3 cut(s) | 364, 401, 475 |
| NspV | TTCGAA | 1 cut(s) | 208 |
| PceI | AGGCCT | 1 cut(s) | 655 |
| PfeI | GAWTC | 1 cut(s) | 31 |
| PflFI | GACNNNGTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 6 cut(s) | 263, 266, 274, 287, 309, 553 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| Ppu21I | YACGTR | 3 cut(s) | 291, 364, 490 |
| PpuMI | RGGWCCY | 1 cut(s) | 460 |
| Psp5II | RGGWCCY | 1 cut(s) | 460 |
| Psp6I | CCWGG | 2 cut(s) | 189, 267 |
| PspGI | CCWGG | 2 cut(s) | 189, 267 |
| PspN4I | GGNNCC | 3 cut(s) | 39, 462, 618 |
| PspPI | GGNCC | 2 cut(s) | 460, 581 |
| PspPPI | RGGWCCY | 1 cut(s) | 460 |
| PsyI | GACNNNGTC | 1 cut(s) | 320 |
| PvuII | CAGCTG | 1 cut(s) | 62 |
| RsaI | GTAC | 3 cut(s) | 97, 293, 488 |
| RsaNI | GTAC | 3 cut(s) | 96, 292, 487 |
| RseI | CAYNNNNRTG | 2 cut(s) | 218, 611 |
| SatI | GCNGC | 6 cut(s) | 262, 265, 273, 286, 308, 552 |
| Sau3AI | GATC | 5 cut(s) | 162, 216, 224, 249, 658 |
| Sau96I | GGNCC | 2 cut(s) | 460, 581 |
| SchI | GAGTC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 2 cut(s) | 191, 269 |
| SduI | GDGCHC | 1 cut(s) | 605 |
| SfaNI | GCATC | 1 cut(s) | 670 |
| SfuI | TTCGAA | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 460 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 218, 611 |
| Sse9I | AATT | 2 cut(s) | 631, 691 |
| SseBI | AGGCCT | 1 cut(s) | 655 |
| SsiI | CCGC | 3 cut(s) | 264, 272, 308 |
| SspMI | CTAG | 2 cut(s) | 44, 503 |
| StuI | AGGCCT | 1 cut(s) | 655 |
| StyD4I | CCNGG | 2 cut(s) | 189, 267 |
| StyI | CCWWGG | 2 cut(s) | 43, 612 |
| TaaI | ACNGT | 1 cut(s) | 529 |
| TaiI | ACGT | 4 cut(s) | 248, 293, 366, 492 |
| TaqI | TCGA | 2 cut(s) | 208, 248 |
| TasI | AATT | 2 cut(s) | 631, 691 |
| TauI | GCSGC | 3 cut(s) | 267, 275, 310 |
| TfiI | GAWTC | 1 cut(s) | 31 |
| TscAI | CASTG | 1 cut(s) | 480 |
| TseFI | GTSAC | 3 cut(s) | 364, 401, 475 |
| TseI | GCWGC | 3 cut(s) | 261, 285, 551 |
| Tsp45I | GTSAC | 3 cut(s) | 364, 401, 475 |
| TspDTI | ATGAA | 4 cut(s) | 189, 334, 385, 412 |
| TspRI | CASTG | 1 cut(s) | 480 |
| Tth111I | GACNNNGTC | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 460 |
| XapI | RAATTY | 1 cut(s) | 691 |
| XbaI | TCTAGA | 1 cut(s) | 502 |
| XmaJI | CCTAGG | 1 cut(s) | 43 |
| XspI | CTAG | 2 cut(s) | 44, 503 |