Rorug06G0451100

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
58052293 .. 58056918
4626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0451100.1

Sequence Viewer

Length: 708 bp
ATGGAATGGAGAAAATGCTATTTGGATGTGATTCTGGTTCCCCTAGGTTTTCTGATAACAGCTGGTTATCATGTATGGTTGTGGCACAATGTTCGTACCAAGCCTGAGACTACTATCATCGGCATAAACACCAGAGGAAGAAGATTATGGGTCTCTGCAATGATCAAGGACAATGAAAAGAAGAACATCCTGGCAGTCCAGACTCTTCGAAACACGATCATGGGATCAACCCTAATGGCCACCACGTCGATCCTTCTCTGCTGCGGCCTGGCGGCCGTGATTAGCAGCACGTACAGCGTGAAGAAGCCGCTGAACGACGCCGTCTATGGGGGTCATGGGGAGTTCATGGTCGCCCTCAAATACGTGACCCTACTCACCCTTTTCCTCTTCTCCTTCATGTGTCACTCGCTTTCCATCAGGTTCATAAACCAAGTGAACATCCTCATCAACAGCCCTCAGGACCCCACTTCTCCAGTGACCCCCGAGTACGTGTCGGAGCTTCTAGAGAAAGGTTACATTCTGAACACGGTGGGGAACAGGCTTTTCTACGCAGCACTACCTCTTATGCTTTGGATTTTTGGGCCGGTGCTGGTGTTTTTGTGCTCCATAACCATGGTGCCAATGCTTTACAATTTGGACTTTGTGCTTACAAGGCCTGATCAGAAAGGAAAGAACATGGATGCTTCTGGAAATTCGGACTTCGTTTGA

Protein Analysis

235

Amino Acids

26.46

Weight (kDa)

8.95

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF599 PF04654 11 - 215 7.8e-77 Protein of unknown function, DUF599
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 3 cut(s) 264, 272, 308
AclWI GGATC 2 cut(s) 232, 244
AcoI YGGCCR 2 cut(s) 237, 273
AcsI RAATTY 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 3 cut(s) 97, 293, 488
AfiI CCNNNNNNNGG 1 cut(s) 327
AflIII ACRYGT 1 cut(s) 489
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 2 cut(s) 189, 267
AluBI AGCT 2 cut(s) 62, 499
AluI AGCT 2 cut(s) 62, 499
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 101, 157
AlwI GGATC 2 cut(s) 232, 244
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 5 cut(s) 237, 265, 273, 581, 653
ApeKI GCWGC 3 cut(s) 261, 285, 551
ApoI RAATTY 1 cut(s) 691
AspA2I CCTAGG 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 460, 581
AsuHPI GGTGA 1 cut(s) 367
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 456
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 3 cut(s) 248, 297, 563
BccI CCATC 1 cut(s) 422
BceAI ACGGC 2 cut(s) 260, 305
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 2 cut(s) 191, 269
BclI TGATCA 2 cut(s) 162, 658
BcoDI GTCTC 2 cut(s) 101, 157
BfaI CTAG 2 cut(s) 44, 503
BisI GCNGC 6 cut(s) 262, 265, 273, 286, 308, 552
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 6 cut(s) 263, 266, 274, 287, 309, 553
Bme1390I CCNGG 2 cut(s) 191, 269
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 482
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 460, 581
BmiI GGNNCC 3 cut(s) 39, 462, 618
BmrFI CCNGG 2 cut(s) 191, 269
BmsI GCATC 1 cut(s) 670
BpmI CTGGAG 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 208
BsaAI YACGTR 3 cut(s) 291, 364, 490
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 43, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 473
Bse21I CCTNAGG 1 cut(s) 456
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 2 cut(s) 191, 269
BseDI CCNNGG 2 cut(s) 43, 612
BseGI GGATG 4 cut(s) 31, 186, 438, 685
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 96, 470
BseNI ACTGG 1 cut(s) 473
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 248, 297, 563
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 239, 267, 275, 583, 655
BshNI GGYRCC 1 cut(s) 616
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 101, 157
BsnI GGCC 5 cut(s) 239, 267, 275, 583, 655
Bso31I GGTCTC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 5 cut(s) 162, 216, 224, 249, 658
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 3 cut(s) 264, 272, 308
BspANI GGCC 5 cut(s) 239, 267, 275, 583, 655
BspCNI CTCAG 2 cut(s) 97, 469
BspLI GGNNCC 3 cut(s) 39, 462, 618
BspPI GGATC 2 cut(s) 232, 244
BspT104I TTCGAA 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 2 cut(s) 43, 612
BssMI GATC 5 cut(s) 162, 216, 224, 249, 658
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 43, 612
Bst2UI CCWGG 2 cut(s) 191, 269
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 210, 392
BstACI GRCGYC 1 cut(s) 318
BstBAI YACGTR 3 cut(s) 291, 364, 490
BstBI TTCGAA 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 105, 456
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 4 cut(s) 31, 186, 438, 685
BstKTI GATC 5 cut(s) 165, 219, 227, 252, 661
BstMAI GTCTC 2 cut(s) 101, 157
BstMBI GATC 5 cut(s) 162, 216, 224, 249, 658
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 294, 652
BstNI CCWGG 2 cut(s) 191, 269
BstSCI CCNGG 2 cut(s) 189, 267
BstV1I GCAGC 3 cut(s) 248, 297, 563
BstXI CCANNNNNNTGG 1 cut(s) 613
BstZI CGGCCG 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 5 cut(s) 239, 267, 275, 583, 655
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 4 cut(s) 31, 186, 438, 685
BtsIMutI CAGTG 1 cut(s) 480
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 2 cut(s) 460, 581
CseI GACGC 1 cut(s) 326
Csp6I GTAC 3 cut(s) 96, 292, 487
CviAII CATG 7 cut(s) 71, 220, 335, 346, 397, 613, 676
CviQI GTAC 3 cut(s) 96, 292, 487
DdeI CTNAG 2 cut(s) 105, 456
DpnI GATC 5 cut(s) 164, 218, 226, 251, 660
DpnII GATC 5 cut(s) 162, 216, 224, 249, 658
EaeI YGGCCR 2 cut(s) 237, 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 210, 392
EarI CTCTTC 2 cut(s) 210, 392
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 43, 612
Eco147I AGGCCT 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 460
Eco52I CGGCCG 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 189, 267
EcoT14I CCWWGG 2 cut(s) 43, 612
ErhI CCWWGG 2 cut(s) 43, 612
FaeI CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
FatI CATG 7 cut(s) 70, 219, 334, 345, 396, 612, 675
FbaI TGATCA 2 cut(s) 162, 658
Fnu4HI GCNGC 6 cut(s) 262, 265, 273, 286, 308, 552
FokI GGATG 4 cut(s) 38, 173, 425, 692
Fsp4HI GCNGC 6 cut(s) 262, 265, 273, 286, 308, 552
FspBI CTAG 2 cut(s) 44, 503
GluI GCNGC 6 cut(s) 262, 265, 273, 286, 308, 552
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 5 cut(s) 239, 267, 275, 583, 655
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
HinfI GANTC 2 cut(s) 31, 202
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 54, 496, 522, 663, 697
Hpy188III TCNNGA 4 cut(s) 199, 458, 503, 687
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 2 cut(s) 250, 320
HpyAV CCTTC 2 cut(s) 263, 403
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 4 cut(s) 245, 290, 363, 489
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 652
HpyF3I CTNAG 2 cut(s) 105, 456
HpySE526I ACGT 4 cut(s) 245, 290, 363, 489
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
Ksp22I TGATCA 2 cut(s) 162, 658
Kzo9I GATC 5 cut(s) 162, 216, 224, 249, 658
LmnI GCTCC 2 cut(s) 496, 608
Lsp1109I GCAGC 3 cut(s) 248, 297, 563
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 44, 503
MaeII ACGT 4 cut(s) 245, 290, 363, 489
MaeIII GTNAC 4 cut(s) 364, 401, 475, 512
MalI GATC 5 cut(s) 164, 218, 226, 251, 660
MboI GATC 5 cut(s) 162, 216, 224, 249, 658
MboII GAAGA 6 cut(s) 150, 153, 193, 197, 313, 379
MhlI GDGCHC 1 cut(s) 605
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 2 cut(s) 631, 691
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 6 cut(s) 128, 365, 395, 452, 465, 570
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MslI CAYNNNNRTG 2 cut(s) 218, 611
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 2 cut(s) 62, 310
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 2 cut(s) 191, 269
MvaI CCWGG 2 cut(s) 191, 269
MwoI GCNNNNNNNGC 2 cut(s) 294, 652
NcoI CCATGG 1 cut(s) 612
NdeII GATC 5 cut(s) 162, 216, 224, 249, 658
NlaIII CATG 7 cut(s) 74, 223, 338, 349, 400, 616, 679
NlaIV GGNNCC 3 cut(s) 39, 462, 618
NmuCI GTSAC 3 cut(s) 364, 401, 475
NspV TTCGAA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 655
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 6 cut(s) 263, 266, 274, 287, 309, 553
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 3 cut(s) 291, 364, 490
PpuMI RGGWCCY 1 cut(s) 460
Psp5II RGGWCCY 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 189, 267
PspGI CCWGG 2 cut(s) 189, 267
PspN4I GGNNCC 3 cut(s) 39, 462, 618
PspPI GGNCC 2 cut(s) 460, 581
PspPPI RGGWCCY 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 97, 293, 488
RsaNI GTAC 3 cut(s) 96, 292, 487
RseI CAYNNNNRTG 2 cut(s) 218, 611
SatI GCNGC 6 cut(s) 262, 265, 273, 286, 308, 552
Sau3AI GATC 5 cut(s) 162, 216, 224, 249, 658
Sau96I GGNCC 2 cut(s) 460, 581
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 191, 269
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 2 cut(s) 218, 611
Sse9I AATT 2 cut(s) 631, 691
SseBI AGGCCT 1 cut(s) 655
SsiI CCGC 3 cut(s) 264, 272, 308
SspMI CTAG 2 cut(s) 44, 503
StuI AGGCCT 1 cut(s) 655
StyD4I CCNGG 2 cut(s) 189, 267
StyI CCWWGG 2 cut(s) 43, 612
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 4 cut(s) 248, 293, 366, 492
TaqI TCGA 2 cut(s) 208, 248
TasI AATT 2 cut(s) 631, 691
TauI GCSGC 3 cut(s) 267, 275, 310
TfiI GAWTC 1 cut(s) 31
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 3 cut(s) 364, 401, 475
TseI GCWGC 3 cut(s) 261, 285, 551
Tsp45I GTSAC 3 cut(s) 364, 401, 475
TspDTI ATGAA 4 cut(s) 189, 334, 385, 412
TspRI CASTG 1 cut(s) 480
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 1 cut(s) 691
XbaI TCTAGA 1 cut(s) 502
XmaJI CCTAGG 1 cut(s) 43
XspI CTAG 2 cut(s) 44, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.