Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 59 - 252 | 5.5e-26 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 728 |
| AciI | CCGC | 1 cut(s) | 728 |
| AcsI | RAATTY | 1 cut(s) | 191 |
| AfaI | GTAC | 5 cut(s) | 105, 266, 289, 399, 762 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 72, 575 |
| AflIII | ACRYGT | 1 cut(s) | 129 |
| AgsI | TTSAA | 4 cut(s) | 52, 136, 466, 781 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 34, 598 |
| AjnI | CCWGG | 2 cut(s) | 321, 447 |
| AluBI | AGCT | 2 cut(s) | 469, 670 |
| AluI | AGCT | 2 cut(s) | 469, 670 |
| Alw21I | GWGCWC | 1 cut(s) | 703 |
| Alw26I | GTCTC | 3 cut(s) | 585, 606, 743 |
| Alw44I | GTGCAC | 1 cut(s) | 699 |
| AoxI | GGCC | 2 cut(s) | 197, 548 |
| ApaLI | GTGCAC | 1 cut(s) | 699 |
| ApeKI | GCWGC | 2 cut(s) | 5, 338 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 351 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AsuC2I | CCSGG | 3 cut(s) | 21, 309, 686 |
| AsuHPI | GGTGA | 1 cut(s) | 9 |
| AsuII | TTCGAA | 1 cut(s) | 345 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BaeGI | GKGCMC | 1 cut(s) | 703 |
| BbsI | GAAGAC | 2 cut(s) | 245, 635 |
| Bbv12I | GWGCWC | 1 cut(s) | 703 |
| BbvI | GCAGC | 2 cut(s) | 17, 325 |
| BccI | CCATC | 2 cut(s) | 388, 657 |
| BciT130I | CCWGG | 2 cut(s) | 323, 449 |
| BcnI | CCSGG | 3 cut(s) | 21, 309, 686 |
| BcoDI | GTCTC | 3 cut(s) | 585, 606, 743 |
| BfaI | CTAG | 2 cut(s) | 470, 696 |
| BisI | GCNGC | 2 cut(s) | 6, 339 |
| BlsI | GCNGC | 2 cut(s) | 7, 340 |
| Bme1390I | CCNGG | 5 cut(s) | 21, 309, 323, 449, 686 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 34, 598 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 693 |
| BmrFI | CCNGG | 5 cut(s) | 21, 309, 323, 449, 686 |
| BpiI | GAAGAC | 2 cut(s) | 245, 635 |
| BpmI | CTGGAG | 1 cut(s) | 470 |
| Bpu14I | TTCGAA | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BpuMI | CCSGG | 3 cut(s) | 21, 309, 686 |
| BsaI | GGTCTC | 1 cut(s) | 585 |
| BsaJI | CCNNGG | 1 cut(s) | 627 |
| BsaWI | WCCGGW | 1 cut(s) | 271 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 672, 702 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 72, 575 |
| Bse118I | RCCGGY | 2 cut(s) | 252, 550 |
| Bse1I | ACTGG | 1 cut(s) | 411 |
| Bse3DI | GCAATG | 1 cut(s) | 243 |
| BseBI | CCWGG | 2 cut(s) | 323, 449 |
| BseDI | CCNNGG | 1 cut(s) | 627 |
| BseGI | GGATG | 1 cut(s) | 736 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 72, 575 |
| BseMI | GCAATG | 1 cut(s) | 243 |
| BseNI | ACTGG | 1 cut(s) | 411 |
| BseSI | GKGCMC | 1 cut(s) | 703 |
| BseXI | GCAGC | 2 cut(s) | 17, 325 |
| BsgI | GTGCAG | 1 cut(s) | 24 |
| Bsh1236I | CGCG | 1 cut(s) | 728 |
| BshFI | GGCC | 2 cut(s) | 199, 550 |
| BsiHKAI | GWGCWC | 1 cut(s) | 703 |
| BsiSI | CCGG | 6 cut(s) | 20, 253, 272, 309, 551, 685 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 72, 575 |
| BsmAI | GTCTC | 3 cut(s) | 585, 606, 743 |
| BsnI | GGCC | 2 cut(s) | 199, 550 |
| Bso31I | GGTCTC | 1 cut(s) | 585 |
| Bsp119I | TTCGAA | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 1 cut(s) | 703 |
| Bsp1407I | TGTACA | 1 cut(s) | 760 |
| BspACI | CCGC | 1 cut(s) | 728 |
| BspANI | GGCC | 2 cut(s) | 199, 550 |
| BspFNI | CGCG | 1 cut(s) | 728 |
| BspHI | TCATGA | 1 cut(s) | 25 |
| BspLI | GGNNCC | 1 cut(s) | 693 |
| BspT104I | TTCGAA | 1 cut(s) | 345 |
| BspTNI | GGTCTC | 1 cut(s) | 585 |
| BsrDI | GCAATG | 1 cut(s) | 243 |
| BsrFI | RCCGGY | 2 cut(s) | 252, 550 |
| BsrGI | TGTACA | 1 cut(s) | 760 |
| BsrI | ACTGG | 1 cut(s) | 411 |
| BssAI | RCCGGY | 2 cut(s) | 252, 550 |
| BssECI | CCNNGG | 1 cut(s) | 627 |
| BssT1I | CCWWGG | 1 cut(s) | 627 |
| Bst2UI | CCWGG | 2 cut(s) | 323, 449 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 760 |
| BstAUI | TGTACA | 1 cut(s) | 760 |
| BstBI | TTCGAA | 1 cut(s) | 345 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 573 |
| BstF5I | GGATG | 1 cut(s) | 736 |
| BstFNI | CGCG | 1 cut(s) | 728 |
| BstMAI | GTCTC | 3 cut(s) | 585, 606, 743 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 698 |
| BstNI | CCWGG | 2 cut(s) | 323, 449 |
| BstSCI | CCNGG | 5 cut(s) | 19, 307, 321, 447, 684 |
| BstSLI | GKGCMC | 1 cut(s) | 703 |
| BstUI | CGCG | 1 cut(s) | 728 |
| BstV1I | GCAGC | 2 cut(s) | 17, 325 |
| BstV2I | GAAGAC | 2 cut(s) | 245, 635 |
| BsuRI | GGCC | 2 cut(s) | 199, 550 |
| BtsCI | GGATG | 1 cut(s) | 736 |
| BtsI | GCAGTG | 1 cut(s) | 378 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| CciI | TCATGA | 1 cut(s) | 25 |
| Cfr10I | RCCGGY | 2 cut(s) | 252, 550 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| Csp6I | GTAC | 5 cut(s) | 104, 265, 288, 398, 761 |
| CviAII | CATG | 3 cut(s) | 26, 653, 677 |
| CviJI | RGCY | 7 cut(s) | 199, 256, 469, 550, 567, 670, 692 |
| CviKI_1 | RGCY | 7 cut(s) | 199, 256, 469, 550, 567, 670, 692 |
| CviQI | GTAC | 5 cut(s) | 104, 265, 288, 398, 761 |
| DriI | GACNNNNNGTC | 2 cut(s) | 34, 598 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 34, 598 |
| Eco130I | CCWWGG | 1 cut(s) | 627 |
| Eco147I | AGGCCT | 1 cut(s) | 199 |
| Eco31I | GGTCTC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 573 |
| EcoRII | CCWGG | 2 cut(s) | 321, 447 |
| EcoT14I | CCWWGG | 1 cut(s) | 627 |
| ErhI | CCWWGG | 1 cut(s) | 627 |
| FaeI | CATG | 3 cut(s) | 29, 656, 680 |
| FatI | CATG | 3 cut(s) | 25, 652, 676 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 339 |
| FokI | GGATG | 1 cut(s) | 743 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 339 |
| FspBI | CTAG | 2 cut(s) | 470, 696 |
| GluI | GCNGC | 2 cut(s) | 6, 339 |
| GsuI | CTGGAG | 1 cut(s) | 470 |
| HaeIII | GGCC | 2 cut(s) | 199, 550 |
| HapII | CCGG | 6 cut(s) | 20, 253, 272, 309, 551, 685 |
| Hin1II | CATG | 3 cut(s) | 29, 656, 680 |
| HincII | GTYRAC | 1 cut(s) | 514 |
| HindII | GTYRAC | 1 cut(s) | 514 |
| HinfI | GANTC | 4 cut(s) | 77, 659, 673, 681 |
| HpaI | GTTAAC | 1 cut(s) | 514 |
| HpaII | CCGG | 6 cut(s) | 20, 253, 272, 309, 551, 685 |
| HphI | GGTGA | 1 cut(s) | 9 |
| Hpy166II | GTNNAC | 2 cut(s) | 514, 701 |
| Hpy188I | TCNGA | 1 cut(s) | 162 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 235, 259, 622 |
| Hpy8I | GTNNAC | 2 cut(s) | 514, 701 |
| HpyAV | CCTTC | 3 cut(s) | 107, 306, 714 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 760 |
| HpyCH4IV | ACGT | 1 cut(s) | 131 |
| HpyCH4V | TGCA | 5 cut(s) | 41, 248, 383, 656, 701 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 698 |
| HpySE526I | ACGT | 1 cut(s) | 131 |
| Hsp92II | CATG | 3 cut(s) | 29, 656, 680 |
| KspAI | GTTAAC | 1 cut(s) | 514 |
| LmnI | GCTCC | 3 cut(s) | 218, 667, 697 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 325 |
| MaeI | CTAG | 2 cut(s) | 470, 696 |
| MaeII | ACGT | 1 cut(s) | 131 |
| MaeIII | GTNAC | 2 cut(s) | 184, 622 |
| MboII | GAAGA | 3 cut(s) | 250, 385, 635 |
| MhlI | GDGCHC | 1 cut(s) | 703 |
| MluCI | AATT | 4 cut(s) | 191, 276, 484, 494 |
| MlyI | GAGTC | 1 cut(s) | 690 |
| MmeI | TCCRAC | 1 cut(s) | 535 |
| MnlI | CCTC | 5 cut(s) | 113, 155, 498, 540, 569 |
| MroXI | GAANNNNTTC | 1 cut(s) | 351 |
| MseI | TTAA | 3 cut(s) | 108, 513, 750 |
| MspI | CCGG | 6 cut(s) | 20, 253, 272, 309, 551, 685 |
| MspR9I | CCNGG | 5 cut(s) | 21, 309, 323, 449, 686 |
| MvaI | CCWGG | 2 cut(s) | 323, 449 |
| MvnI | CGCG | 1 cut(s) | 728 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 698 |
| NciI | CCSGG | 3 cut(s) | 21, 309, 686 |
| NlaIII | CATG | 3 cut(s) | 29, 656, 680 |
| NlaIV | GGNNCC | 1 cut(s) | 693 |
| NmuCI | GTSAC | 2 cut(s) | 184, 622 |
| NspV | TTCGAA | 1 cut(s) | 345 |
| PagI | TCATGA | 1 cut(s) | 25 |
| PceI | AGGCCT | 1 cut(s) | 199 |
| PdmI | GAANNNNTTC | 1 cut(s) | 351 |
| PfeI | GAWTC | 3 cut(s) | 77, 659, 673 |
| PfoI | TCCNGGA | 3 cut(s) | 307, 321, 447 |
| PkrI | GCNGC | 2 cut(s) | 7, 340 |
| PleI | GAGTC | 1 cut(s) | 689 |
| PpsI | GAGTC | 1 cut(s) | 689 |
| Psp6I | CCWGG | 2 cut(s) | 321, 447 |
| PspGI | CCWGG | 2 cut(s) | 321, 447 |
| PspN4I | GGNNCC | 1 cut(s) | 693 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| RsaI | GTAC | 5 cut(s) | 105, 266, 289, 399, 762 |
| RsaNI | GTAC | 5 cut(s) | 104, 265, 288, 398, 761 |
| SaqAI | TTAA | 3 cut(s) | 108, 513, 750 |
| SatI | GCNGC | 2 cut(s) | 6, 339 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| SchI | GAGTC | 1 cut(s) | 690 |
| ScrFI | CCNGG | 5 cut(s) | 21, 309, 323, 449, 686 |
| SduI | GDGCHC | 1 cut(s) | 703 |
| SetI | ASST | 7 cut(s) | 124, 134, 270, 471, 509, 672, 706 |
| SfuI | TTCGAA | 1 cut(s) | 345 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 4 cut(s) | 191, 276, 484, 494 |
| SseBI | AGGCCT | 1 cut(s) | 199 |
| SsiI | CCGC | 1 cut(s) | 728 |
| SspMI | CTAG | 2 cut(s) | 470, 696 |
| StuI | AGGCCT | 1 cut(s) | 199 |
| StyD4I | CCNGG | 5 cut(s) | 19, 307, 321, 447, 684 |
| StyI | CCWWGG | 1 cut(s) | 627 |
| TaaI | ACNGT | 2 cut(s) | 32, 760 |
| TaiI | ACGT | 1 cut(s) | 134 |
| TaqI | TCGA | 2 cut(s) | 236, 345 |
| TasI | AATT | 4 cut(s) | 191, 276, 484, 494 |
| TatI | WGTACW | 2 cut(s) | 287, 760 |
| TfiI | GAWTC | 3 cut(s) | 77, 659, 673 |
| Tru1I | TTAA | 3 cut(s) | 108, 513, 750 |
| Tru9I | TTAA | 3 cut(s) | 108, 513, 750 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseFI | GTSAC | 2 cut(s) | 184, 622 |
| TseI | GCWGC | 2 cut(s) | 5, 338 |
| Tsp45I | GTSAC | 2 cut(s) | 184, 622 |
| TspDTI | ATGAA | 4 cut(s) | 126, 344, 513, 665 |
| TspGWI | ACGGA | 1 cut(s) | 70 |
| TspRI | CASTG | 1 cut(s) | 385 |
| VneI | GTGCAC | 1 cut(s) | 699 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 573 |
| XapI | RAATTY | 1 cut(s) | 191 |
| XmnI | GAANNNNTTC | 1 cut(s) | 351 |
| XspI | CTAG | 2 cut(s) | 470, 696 |