Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

39542188 .. 39542870

Gene Structure 683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49778

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATTGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGACTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAAATGCAGACATAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

195

Amino Acids

21.93

Weight (kDa)

5.13

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	1.2e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	3 cut(s)	107, 516, 525
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	4 cut(s)	313, 321, 334, 348
AcsI	RAATTY	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	158, 346
AfiI	CCNNNNNNNGG	2 cut(s)	302, 467
AflIII	ACRYGT	1 cut(s)	379
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	179, 277, 443
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	2 cut(s)	550, 584
AluI	AGCT	2 cut(s)	550, 584
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	313, 321, 334, 348
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	281
AsiGI	ACCGGT	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	230, 447
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	422, 482, 539
BamHI	GGATCC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	100, 552
BauI	CACGAG	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	380
BbsI	GAAGAC	2 cut(s)	223, 500
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	50, 392
BciT130I	CCWGG	1 cut(s)	434
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	79
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	2 cut(s)	75, 517
BlpI	GCTNAGC	1 cut(s)	551
BlsI	GCNGC	2 cut(s)	76, 518
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	79, 434
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	4 cut(s)	6, 99, 242, 328
BmrFI	CCNGG	2 cut(s)	79, 434
BpiI	GAAGAC	2 cut(s)	223, 500
BpmI	CTGGAG	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	3 cut(s)	110, 236, 566
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	2 cut(s)	90, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 467
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	302, 467
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	78, 91, 296
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	302, 467
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	100, 552
Bsp143I	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
Bsp1720I	GCTNAGC	1 cut(s)	551
BspACI	CCGC	3 cut(s)	107, 516, 525
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	564
BspLI	GGNNCC	4 cut(s)	6, 99, 242, 328
BspPI	GGATC	4 cut(s)	313, 321, 334, 348
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	380
BstDEI	CTNAG	3 cut(s)	116, 551, 585
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	8 cut(s)	186, 216, 308, 316, 329, 356, 364, 408
BstMBI	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	522, 581
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	77, 432
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	223, 500
BstX2I	RGATCY	4 cut(s)	183, 305, 326, 353
BstYI	RGATCY	4 cut(s)	183, 305, 326, 353
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	157, 345
CspAI	ACCGGT	1 cut(s)	90
CviAII	CATG	4 cut(s)	409, 463, 467, 490
CviJI	RGCY	9 cut(s)	77, 98, 132, 257, 387, 519, 550, 555, 584
CviKI_1	RGCY	9 cut(s)	77, 98, 132, 257, 387, 519, 550, 555, 584
CviQI	GTAC	2 cut(s)	157, 345
DdeI	CTNAG	3 cut(s)	116, 551, 585
DpnI	GATC	8 cut(s)	185, 215, 307, 315, 328, 355, 363, 407
DpnII	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	100, 552
Eco53kI	GAGCTC	1 cut(s)	550
Eco72I	CACGTG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	100, 552
FaeI	CATG	4 cut(s)	412, 466, 470, 493
FaiI	YATR	9 cut(s)	141, 207, 390, 410, 464, 468, 491, 522, 581
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	4 cut(s)	408, 462, 466, 489
FbaI	TGATCA	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	75, 517
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	100, 552
Fsp4HI	GCNGC	2 cut(s)	75, 517
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	2 cut(s)	75, 517
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	3 cut(s)	78, 91, 296
Hin1II	CATG	4 cut(s)	412, 466, 470, 493
HinfI	GANTC	3 cut(s)	120, 175, 530
HpaII	CCGG	3 cut(s)	78, 91, 296
HphI	GGTGA	3 cut(s)	422, 482, 539
Hpy188I	TCNGA	3 cut(s)	198, 288, 505
Hpy188III	TCNNGA	5 cut(s)	167, 179, 244, 260, 311
HpyAV	CCTTC	3 cut(s)	200, 271, 458
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	3 cut(s)	228, 291, 379
HpyCH4V	TGCA	3 cut(s)	19, 466, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	522, 581
HpyF3I	CTNAG	3 cut(s)	116, 551, 585
HpySE526I	ACGT	3 cut(s)	228, 291, 379
Hsp92II	CATG	4 cut(s)	412, 466, 470, 493
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
LmnI	GCTCC	2 cut(s)	28, 103
LpnPI	CCDG	9 cut(s)	53, 91, 104, 180, 257, 309, 318, 419, 446
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	3 cut(s)	228, 291, 379
MaeIII	GTNAC	2 cut(s)	375, 527
MalI	GATC	8 cut(s)	185, 215, 307, 315, 328, 355, 363, 407
MboI	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
MboII	GAAGA	2 cut(s)	223, 505
MflI	RGATCY	4 cut(s)	183, 305, 326, 353
MhlI	GDGCHC	2 cut(s)	100, 552
MluCI	AATT	2 cut(s)	281, 319
MlyI	GAGTC	1 cut(s)	524
Mph1103I	ATGCAT	1 cut(s)	468
MroXI	GAANNNNTTC	2 cut(s)	230, 447
MseI	TTAA	1 cut(s)	153
MspI	CCGG	3 cut(s)	78, 91, 296
MspR9I	CCNGG	2 cut(s)	79, 434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	522, 581
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
NlaIII	CATG	4 cut(s)	412, 466, 470, 493
NlaIV	GGNNCC	4 cut(s)	6, 99, 242, 328
NmuCI	GTSAC	2 cut(s)	375, 527
NsiI	ATGCAT	1 cut(s)	468
PdmI	GAANNNNTTC	2 cut(s)	230, 447
PfeI	GAWTC	2 cut(s)	120, 175
PinAI	ACCGGT	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	76, 518
PleI	GAGTC	1 cut(s)	524
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	432
PspCI	CACGTG	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	4 cut(s)	6, 99, 242, 328
PspPI	GGNCC	1 cut(s)	130
PsuI	RGATCY	4 cut(s)	183, 305, 326, 353
RsaI	GTAC	2 cut(s)	158, 346
RsaNI	GTAC	2 cut(s)	157, 345
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	75, 517
Sau3AI	GATC	8 cut(s)	183, 213, 305, 313, 326, 353, 361, 405
Sau96I	GGNCC	1 cut(s)	130
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	79, 434
SduI	GDGCHC	2 cut(s)	100, 552
SetI	ASST	7 cut(s)	231, 252, 294, 382, 514, 552, 586
SmlI	CTYRAG	3 cut(s)	125, 251, 545
SmoI	CTYRAG	3 cut(s)	125, 251, 545
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	2 cut(s)	281, 319
SsiI	CCGC	3 cut(s)	107, 516, 525
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	77, 432
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	3 cut(s)	231, 294, 382
TaqI	TCGA	3 cut(s)	51, 216, 312
TasI	AATT	2 cut(s)	281, 319
TatI	WGTACW	1 cut(s)	344
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	120, 175
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	375, 527
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	375, 527
TspDTI	ATGAA	2 cut(s)	182, 506
TspGWI	ACGGA	1 cut(s)	582
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	281
XmnI	GAANNNNTTC	2 cut(s)	230, 447
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.