Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

85114467 .. 85115030

Gene Structure 564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGTCTCAACTCCTACAGAGATACAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

187

Amino Acids

21.03

Weight (kDa)

5.26

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	1.1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AciI	CCGC	3 cut(s)	83, 492, 501
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	5 cut(s)	289, 297, 310, 324, 385
AcsI	RAATTY	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	134, 322
AfiI	CCNNNNNNNGG	2 cut(s)	278, 443
AflIII	ACRYGT	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	155, 253, 419
AhlI	ACTAGT	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	5 cut(s)	289, 297, 310, 324, 385
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	398, 458
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	76, 528
BauI	CACGAG	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	199, 476
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 368
BciT130I	CCWGG	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	536
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	541
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	55, 410
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	75, 218, 304
BmrFI	CCNGG	2 cut(s)	55, 410
BpiI	GAAGAC	2 cut(s)	199, 476
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	3 cut(s)	86, 212, 542
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	2 cut(s)	66, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 443
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	410
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	278, 443
BseMII	CTCAG	1 cut(s)	541
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	3 cut(s)	54, 67, 272
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	278, 443
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	76, 528
Bsp143I	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
BspACI	CCGC	3 cut(s)	83, 492, 501
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	540
BspDI	ATCGAT	1 cut(s)	380
BspLI	GGNNCC	3 cut(s)	75, 218, 304
BspPI	GGATC	5 cut(s)	289, 297, 310, 324, 385
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	92, 527, 561
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	9 cut(s)	162, 192, 284, 292, 305, 332, 340, 380, 384
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	53, 408
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	199, 476
BstX2I	RGATCY	4 cut(s)	159, 281, 302, 329
BstYI	RGATCY	4 cut(s)	159, 281, 302, 329
Bsu15I	ATCGAT	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	133, 321
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	5 cut(s)	385, 439, 443, 466, 556
CviJI	RGCY	8 cut(s)	53, 74, 108, 233, 363, 507, 526, 560
CviKI_1	RGCY	8 cut(s)	53, 74, 108, 233, 363, 507, 526, 560
CviQI	GTAC	2 cut(s)	133, 321
DdeI	CTNAG	3 cut(s)	92, 527, 561
DpnI	GATC	9 cut(s)	161, 191, 283, 291, 304, 331, 339, 379, 383
DpnII	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	76, 528
Eco53kI	GAGCTC	1 cut(s)	526
Eco72I	CACGTG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	444
EcoT38I	GRGCYC	2 cut(s)	76, 528
FaeI	CATG	5 cut(s)	388, 442, 446, 469, 559
FaiI	YATR	9 cut(s)	117, 183, 366, 386, 440, 444, 467, 498, 557
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	5 cut(s)	384, 438, 442, 465, 555
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	76, 528
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	3 cut(s)	54, 67, 272
Hin1II	CATG	5 cut(s)	388, 442, 446, 469, 559
HinfI	GANTC	2 cut(s)	96, 151
HpaII	CCGG	3 cut(s)	54, 67, 272
HphI	GGTGA	2 cut(s)	398, 458
Hpy188I	TCNGA	3 cut(s)	174, 264, 481
Hpy188III	TCNNGA	5 cut(s)	143, 155, 220, 236, 287
HpyAV	CCTTC	3 cut(s)	176, 247, 434
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	3 cut(s)	204, 267, 355
HpyCH4V	TGCA	1 cut(s)	442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	3 cut(s)	92, 527, 561
HpySE526I	ACGT	3 cut(s)	204, 267, 355
Hsp92II	CATG	5 cut(s)	388, 442, 446, 469, 559
Kzo9I	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
LmnI	GCTCC	2 cut(s)	4, 79
LpnPI	CCDG	9 cut(s)	29, 67, 80, 156, 233, 285, 294, 395, 422
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	3 cut(s)	204, 267, 355
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	9 cut(s)	161, 191, 283, 291, 304, 331, 339, 379, 383
MboI	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
MboII	GAAGA	2 cut(s)	199, 481
MflI	RGATCY	4 cut(s)	159, 281, 302, 329
MhlI	GDGCHC	2 cut(s)	76, 528
MluCI	AATT	2 cut(s)	257, 295
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	54, 67, 272
MspR9I	CCNGG	2 cut(s)	55, 410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	498
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
NlaIII	CATG	5 cut(s)	388, 442, 446, 469, 559
NlaIV	GGNNCC	3 cut(s)	75, 218, 304
NmuCI	GTSAC	1 cut(s)	351
NsiI	ATGCAT	1 cut(s)	444
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	96, 151
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	408
PspCI	CACGTG	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	75, 218, 304
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	4 cut(s)	159, 281, 302, 329
RsaI	GTAC	2 cut(s)	134, 322
RsaNI	GTAC	2 cut(s)	133, 321
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	9 cut(s)	159, 189, 281, 289, 302, 329, 337, 377, 381
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	55, 410
SduI	GDGCHC	2 cut(s)	76, 528
SetI	ASST	6 cut(s)	207, 228, 270, 358, 490, 528
SfcI	CTRYAG	1 cut(s)	541
SmlI	CTYRAG	3 cut(s)	101, 227, 521
SmoI	CTYRAG	3 cut(s)	101, 227, 521
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	2 cut(s)	257, 295
SsiI	CCGC	3 cut(s)	83, 492, 501
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	53, 408
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	3 cut(s)	207, 270, 358
TaqI	TCGA	4 cut(s)	27, 192, 288, 380
TasI	AATT	2 cut(s)	257, 295
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	96, 151
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	158, 482
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.