Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

8639861 .. 8641642

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGATGATCGAGTCTCTATTCGCTTGCTTCAATCCTCGATGCAATACGAGCAAGCTTAGGCTGCTAAAGAGAAAAAAACTCCCAAAGAAATTAGAGAGAGAGCAGAAGGAGAATGAAGATGATAAGTACAGAAACCAAACCAGTTCTAATGAATGTACCTCTTGGCAGCCACCGCCTCCTGACATCATGGAGCAAGTTCTGCCGCGTGTCAGAGTAAGTGATCAAATAAGGCTAAGCATTGCCTGCAAGTCTTGGATGTCAATCGTTATGCGTAGAGACATCCGCAGTGCTTCTCATGAATTCCCATGGTTACTACTCCCTCAAACCCCACATTGCAGCAACAAGTACGTAAGCTTTGCCAGCGTGTCAGAGGGGAGAGTTGTCAAGTTGAAGCTACCTAAGCAAGTTCGTGGATGGTGGATTTATGGGTCTTCTAAAGGTTGGTTGATCATGATCAAGGAAAGAGGTCTAAATTCCAAGATGTGTCTACTTAACCCAATTTCAGGAGCCCTACTCCAACTTCCACCCTTGAGAACACTTCCTTTTCTGAAAGATTTTGTGAAAACCGAGGACTGGAAACTTTTTGGTGCCAATGTATTCGACTTAAGGATTGCACTATCAACCTCTGATGGAATTGCTTTAGATTCAAAGCGTTGTACGGTAGCAGCAGTTTTTAATGATAAGTCGAAATTGAGTTTGTGCAGACCTGGAGACAGAACATGGAGTGACTTTCAAGTATTAGATACTAATCAAAACGACTGGATTGCTGATTTATTGTTTTCTTCCGGCAGTCTATATGTTTTGGTTCGTAGTAGTCAAAAGGAAAGCTTTGTAGACTCAGTTACTCAAACCTTGAACTTTGGCTTTGGAGATGCAGAAAATTTGAAAATGAAGTTGGTCTACGACAAGCATGAAAACAGGAACGTGAACGTTAATGAATGTCATAGTGACTATAAGATCGTTTACAATGCATTATACTTCTCAAGATTGTTAGAATCAACCAGCAATGAAGTCTTATTGATCCATCAAATGGTAGATTATGTTGTGGGAAGAAGAGAGGATATTATTGGTGACAATAATGAGAATAATGGAGGCGGCAATATGGAGAATGATGATGGTGAGCAACACATTCATCATGATAATGACGACGGAAATCTTGAGGTTGATGGGGTAGACATCGATCAGAATGATGAGGATGATGATGAAGCCAACAACTTAGAAGATATTGATCAGCAAAATGGAGGAAACATTATTTATGGTGATGAAGGCAGTAATGAGAATGATGGTGGCGACAGCAATATGGAAAATGATGATGGTGGTGAAGGCCATAACGACAATAATGATGTTGATGTGGGAGACATTAATCAGAATCCTGAAGGTGATGAGGAAGACAACAATAACCCAGAAGATAATGGTCAGCAAGGAGAAACTATTGATGAAGATGCACCGGGATTTAATGCATATATGACAACAAGGAGTTTTAGAGTATACAAGACTGACGACGACAACTTTATTCCATTGCAATGCTTGGGGGATCAATTATTCTTTCTTGGAGATTGTGGTTCCTTCTCCTTTGGAGTCAGTAATATGAAAAAATCAGAAAGGAATTGTATTTATTTTGCATCAAATTTGATGTACGATTGGGAGGCAGCTCCAAAAACGTATGCATCTCGTGACATTGGTATATTCTACCTAGATAGCCAAAGAATTGAGCGGTCATTTCCAAGTGTTGAGATGTCTCTACGGTATCAAGGGACTTGGTTCACTCCAAGTTTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

593

Amino Acids

67.56

Weight (kDa)

4.64

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	119 - 343	1.3e-20	KIB1-4 beta-propeller
Beta-prop_KIB1-4	PF03478	488 - 563	7.8e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	1030
AccBSI	CCGCTC	1 cut(s)	1714
AccI	GTMKAC	5 cut(s)	487, 834, 900, 1173, 1488
AccII	CGCG	1 cut(s)	205
AciI	CCGC	5 cut(s)	173, 203, 283, 1095, 1714
AclI	AACGTT	1 cut(s)	930
AclWI	GGATC	2 cut(s)	1015, 1542
AcsI	RAATTY	4 cut(s)	299, 472, 880, 1627
AcuI	CTGAAG	1 cut(s)	1395
AfaI	GTAC	5 cut(s)	128, 157, 347, 658, 1637
AfiI	CCNNNNNNNGG	3 cut(s)	503, 573, 1030
AflII	CTTAAG	1 cut(s)	604
AgsI	TTSAA	6 cut(s)	31, 391, 648, 734, 856, 886
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	5 cut(s)	55, 354, 394, 828, 1652
AluI	AGCT	5 cut(s)	55, 354, 394, 828, 1652
Alw26I	GTCTC	5 cut(s)	18, 270, 705, 1350, 1743
AlwI	GGATC	2 cut(s)	1015, 1542
AoxI	GGCC	1 cut(s)	1324
ApeKI	GCWGC	5 cut(s)	61, 166, 336, 665, 1649
ApoI	RAATTY	4 cut(s)	299, 472, 880, 1627
AseI	ATTAAT	1 cut(s)	1362
AsuC2I	CCSGG	1 cut(s)	1449
AsuHPI	GGTGA	5 cut(s)	1082, 1130, 1271, 1331, 1391
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	511
BarI	GAAGNNNNNNTAC	2 cut(s)	884, 916
BauI	CACGAG	1 cut(s)	1671
BbsI	GAAGAC	2 cut(s)	423, 1395
BbvI	GCAGC	5 cut(s)	48, 178, 348, 677, 1661
BccI	CCATC	7 cut(s)	408, 623, 1032, 1109, 1160, 1277, 1307
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	1 cut(s)	708
BclI	TGATCA	4 cut(s)	220, 447, 453, 1228
BcnI	CCSGG	1 cut(s)	1449
BcoDI	GTCTC	5 cut(s)	18, 270, 705, 1350, 1743
BfaI	CTAG	1 cut(s)	1694
BfrI	CTTAAG	1 cut(s)	604
BisI	GCNGC	7 cut(s)	62, 167, 203, 337, 666, 1096, 1650
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	7 cut(s)	63, 168, 204, 338, 667, 1097, 1651
Bme1390I	CCNGG	2 cut(s)	708, 1449
BmiI	GGNNCC	3 cut(s)	508, 589, 1564
BmrFI	CCNGG	2 cut(s)	708, 1449
BmsI	GCATC	5 cut(s)	29, 862, 1432, 1631, 1676
BpiI	GAAGAC	2 cut(s)	423, 1395
BplI	GAGNNNNNCTC	2 cut(s)	498, 530
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	2 cut(s)	56, 399
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	3 cut(s)	550, 967, 1178
BpuMI	CCSGG	1 cut(s)	1449
Bsa29I	ATCGAT	1 cut(s)	1179
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	4 cut(s)	260, 452, 747, 1227
BsaJI	CCNNGG	2 cut(s)	305, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 573, 1030
Bse1I	ACTGG	3 cut(s)	141, 578, 764
Bse3DI	GCAATG	5 cut(s)	237, 331, 1012, 1517, 1529
Bse8I	GATNNNNATC	4 cut(s)	260, 452, 747, 1227
BseBI	CCWGG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	1179
BseDI	CCNNGG	2 cut(s)	305, 567
BseGI	GGATG	4 cut(s)	261, 279, 419, 1201
BseJI	GATNNNNATC	4 cut(s)	260, 452, 747, 1227
BseLI	CCNNNNNNNGG	3 cut(s)	503, 573, 1030
BseMI	GCAATG	5 cut(s)	237, 331, 1012, 1517, 1529
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	3 cut(s)	141, 578, 764
BseXI	GCAGC	5 cut(s)	48, 178, 348, 677, 1661
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	1326
BshNI	GGYRCC	1 cut(s)	587
BshVI	ATCGAT	1 cut(s)	1179
BsiSI	CCGG	2 cut(s)	786, 1448
BslFI	GGGAC	1 cut(s)	1768
BslI	CCNNNNNNNGG	3 cut(s)	503, 573, 1030
BsmAI	GTCTC	5 cut(s)	18, 270, 705, 1350, 1743
BsmFI	GGGAC	1 cut(s)	1768
BsnI	GGCC	1 cut(s)	1326
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
Bsp1720I	GCTNAGC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	5 cut(s)	173, 203, 283, 1095, 1714
BspANI	GGCC	1 cut(s)	1326
BspCNI	CTCAG	1 cut(s)	851
BspDI	ATCGAT	1 cut(s)	1179
BspFNI	CGCG	1 cut(s)	205
BspHI	TCATGA	3 cut(s)	295, 450, 1135
BspLI	GGNNCC	3 cut(s)	508, 589, 1564
BspPI	GGATC	2 cut(s)	1015, 1542
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	604
BsrBI	CCGCTC	1 cut(s)	1714
BsrDI	GCAATG	5 cut(s)	237, 331, 1012, 1517, 1529
BsrI	ACTGG	3 cut(s)	141, 578, 764
BssECI	CCNNGG	2 cut(s)	305, 567
BssMI	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
BssNAI	GTATAC	1 cut(s)	1489
BssSI	CACGAG	1 cut(s)	1671
BssT1I	CCWWGG	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	1489
Bst2BI	CACGAG	1 cut(s)	1671
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	2 cut(s)	661, 1746
Bst6I	CTCTTC	1 cut(s)	1048
BstAFI	CTTAAG	1 cut(s)	604
BstAPI	GCANNNNNTGC	2 cut(s)	199, 243
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	4 cut(s)	25, 53, 244, 361
BstDEI	CTNAG	5 cut(s)	56, 233, 399, 838, 1216
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	261, 279, 419, 1201
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	9 cut(s)	9, 223, 450, 456, 960, 1023, 1183, 1231, 1537
BstMAI	GTCTC	5 cut(s)	18, 270, 705, 1350, 1743
BstMBI	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 61, 172, 199, 243, 360, 400
BstNI	CCWGG	1 cut(s)	708
BstSCI	CCNGG	2 cut(s)	706, 1447
BstSNI	TACGTA	1 cut(s)	349
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	5 cut(s)	48, 178, 348, 677, 1661
BstV2I	GAAGAC	2 cut(s)	423, 1395
BstZ17I	GTATAC	1 cut(s)	1489
Bsu15I	ATCGAT	1 cut(s)	1179
BsuRI	GGCC	1 cut(s)	1326
BsuTUI	ATCGAT	1 cut(s)	1179
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	4 cut(s)	261, 279, 419, 1201
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	25, 53, 244, 361
CciI	TCATGA	3 cut(s)	295, 450, 1135
ClaI	ATCGAT	1 cut(s)	1179
Csp6I	GTAC	5 cut(s)	127, 156, 346, 657, 1636
CviAII	CATG	7 cut(s)	187, 296, 306, 451, 720, 911, 1136
CviQI	GTAC	5 cut(s)	127, 156, 346, 657, 1636
DdeI	CTNAG	5 cut(s)	56, 233, 399, 838, 1216
DpnI	GATC	9 cut(s)	8, 222, 449, 455, 959, 1022, 1182, 1230, 1536
DpnII	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
Eam1104I	CTCTTC	1 cut(s)	1048
EarI	CTCTTC	1 cut(s)	1048
Eco105I	TACGTA	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	1395
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	305
EcoT22I	ATGCAT	3 cut(s)	973, 1462, 1669
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	7 cut(s)	190, 299, 309, 454, 723, 914, 1139
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	1 cut(s)	1768
FatI	CATG	7 cut(s)	186, 295, 305, 450, 719, 910, 1135
FbaI	TGATCA	4 cut(s)	220, 447, 453, 1228
FblI	GTMKAC	5 cut(s)	487, 834, 900, 1173, 1488
Fnu4HI	GCNGC	7 cut(s)	62, 167, 203, 337, 666, 1096, 1650
FokI	GGATG	4 cut(s)	266, 268, 426, 1208
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	7 cut(s)	62, 167, 203, 337, 666, 1096, 1650
FspBI	CTAG	1 cut(s)	1694
GluI	GCNGC	7 cut(s)	62, 167, 203, 337, 666, 1096, 1650
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	1326
HapII	CCGG	2 cut(s)	786, 1448
Hin1II	CATG	7 cut(s)	190, 299, 309, 454, 723, 914, 1139
HindIII	AAGCTT	3 cut(s)	53, 352, 826
HinfI	GANTC	6 cut(s)	11, 644, 836, 995, 1369, 1578
HpaII	CCGG	2 cut(s)	786, 1448
HphI	GGTGA	5 cut(s)	1082, 1130, 1271, 1331, 1391
Hpy166II	GTNNAC	8 cut(s)	488, 835, 901, 928, 964, 1174, 1489, 1764
Hpy188I	TCNGA	7 cut(s)	212, 370, 549, 628, 1185, 1368, 1600
Hpy188III	TCNNGA	9 cut(s)	179, 296, 451, 504, 984, 1136, 1157, 1373, 1673
Hpy8I	GTNNAC	8 cut(s)	488, 835, 901, 928, 964, 1174, 1489, 1764
Hpy99I	CGWCG	2 cut(s)	1151, 1505
HpyAV	CCTTC	5 cut(s)	100, 1259, 1316, 1370, 1576
HpyCH4III	ACNGT	2 cut(s)	661, 1746
HpyCH4IV	ACGT	4 cut(s)	348, 924, 930, 1661
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 61, 172, 199, 243, 360, 400
HpyF3I	CTNAG	5 cut(s)	56, 233, 399, 838, 1216
HpySE526I	ACGT	4 cut(s)	348, 924, 930, 1661
Hsp92II	CATG	7 cut(s)	190, 299, 309, 454, 723, 914, 1139
Ksp22I	TGATCA	4 cut(s)	220, 447, 453, 1228
Kzo9I	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
LmnI	GCTCC	3 cut(s)	190, 506, 1657
Lsp1109I	GCAGC	5 cut(s)	48, 178, 348, 677, 1661
LweI	GCATC	5 cut(s)	29, 862, 1432, 1631, 1676
MaeI	CTAG	1 cut(s)	1694
MaeII	ACGT	4 cut(s)	348, 924, 930, 1661
MaeIII	GTNAC	6 cut(s)	309, 725, 841, 947, 1070, 1673
MalI	GATC	9 cut(s)	8, 222, 449, 455, 959, 1022, 1182, 1230, 1536
MbiI	CCGCTC	1 cut(s)	1714
MboI	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
MboII	GAAGA	9 cut(s)	128, 423, 774, 1062, 1065, 1232, 1400, 1418, 1451
MhlI	GDGCHC	1 cut(s)	511
MlyI	GAGTC	3 cut(s)	20, 830, 1587
MmeI	TCCRAC	1 cut(s)	541
Mph1103I	ATGCAT	3 cut(s)	973, 1462, 1669
MseI	TTAA	6 cut(s)	492, 605, 675, 933, 1362, 1455
MslI	CAYNNNNRTG	2 cut(s)	1140, 1522
MspCI	CTTAAG	1 cut(s)	604
MspI	CCGG	2 cut(s)	786, 1448
MspR9I	CCNGG	2 cut(s)	708, 1449
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	7 cut(s)	48, 61, 172, 199, 243, 360, 400
NciI	CCSGG	1 cut(s)	1449
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
NlaIII	CATG	7 cut(s)	190, 299, 309, 454, 723, 914, 1139
NlaIV	GGNNCC	3 cut(s)	508, 589, 1564
NmuCI	GTSAC	4 cut(s)	725, 947, 1070, 1673
NsiI	ATGCAT	3 cut(s)	973, 1462, 1669
PagI	TCATGA	3 cut(s)	295, 450, 1135
PfeI	GAWTC	3 cut(s)	644, 995, 1369
PflMI	CCANNNNNTGG	1 cut(s)	1030
PkrI	GCNGC	7 cut(s)	63, 168, 204, 338, 667, 1097, 1651
PleI	GAGTC	3 cut(s)	19, 830, 1586
PpsI	GAGTC	3 cut(s)	19, 830, 1586
Ppu21I	YACGTR	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	1362
Psp1406I	AACGTT	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	3 cut(s)	508, 589, 1564
RsaI	GTAC	5 cut(s)	128, 157, 347, 658, 1637
RsaNI	GTAC	5 cut(s)	127, 156, 346, 657, 1636
RseI	CAYNNNNRTG	2 cut(s)	1140, 1522
SaqAI	TTAA	6 cut(s)	492, 605, 675, 933, 1362, 1455
SatI	GCNGC	7 cut(s)	62, 167, 203, 337, 666, 1096, 1650
Sau3AI	GATC	9 cut(s)	6, 220, 447, 453, 957, 1020, 1180, 1228, 1534
SchI	GAGTC	3 cut(s)	20, 830, 1587
ScrFI	CCNGG	2 cut(s)	708, 1449
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	5 cut(s)	29, 862, 1432, 1631, 1676
SmiMI	CAYNNNNRTG	2 cut(s)	1140, 1522
SmlI	CTYRAG	4 cut(s)	529, 604, 982, 1157
SmoI	CTYRAG	4 cut(s)	529, 604, 982, 1157
SnaBI	TACGTA	1 cut(s)	349
SsiI	CCGC	5 cut(s)	173, 203, 283, 1095, 1714
SspMI	CTAG	1 cut(s)	1694
StyD4I	CCNGG	2 cut(s)	706, 1447
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	661, 1746
TaiI	ACGT	4 cut(s)	351, 927, 933, 1664
TaqI	TCGA	5 cut(s)	9, 37, 600, 686, 1179
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	2 cut(s)	205, 1098
TfiI	GAWTC	3 cut(s)	644, 995, 1369
Tru1I	TTAA	6 cut(s)	492, 605, 675, 933, 1362, 1455
Tru9I	TTAA	6 cut(s)	492, 605, 675, 933, 1362, 1455
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	4 cut(s)	725, 947, 1070, 1673
TseI	GCWGC	5 cut(s)	61, 166, 336, 665, 1649
Tsp45I	GTSAC	4 cut(s)	725, 947, 1070, 1673
TspGWI	ACGGA	1 cut(s)	1164
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	1030
Vha464I	CTTAAG	1 cut(s)	604
VspI	ATTAAT	1 cut(s)	1362
XapI	RAATTY	4 cut(s)	299, 472, 880, 1627
XmiI	GTMKAC	5 cut(s)	487, 834, 900, 1173, 1488
XspI	CTAG	1 cut(s)	1694
Zsp2I	ATGCAT	3 cut(s)	973, 1462, 1669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.