RchiOBHm_Chr4g0402011

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
20551445 .. 20552113
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37388

Sequence Viewer

Length: 669 bp
ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGGCCGACCAATAACCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAAGCTCGAGAGAGGCAGCTGATGAGGCCAATTCGGAAAGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGCTCCACTGATGATGGTAGGTCCATTGACCTAAACTTTGGTTCCACTGGTCCTACTGGTGATGATGGATCCATTGATCTAAATTTTGGGTCATGTGTCGGGTATGGTGTTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCACGGTGAGAACGTCTTTGGCAACATGAAGACTACTTCCGCGGGAGGTAGCGGCTATGGTTGGTACTCCGGTGGCTGGGACGACAACAATGGTGGTTCTTGCATTTCTCTTGAGCTTAGTCTCAACTCCTCCGGAGCTGCTGACATGGCTTAG

Protein Analysis

222

Amino Acids

24.26

Weight (kDa)

4.88

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 8.4e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccII CGCG 1 cut(s) 557
AccIII TCCGGA 1 cut(s) 647
AciI CCGC 4 cut(s) 110, 555, 557, 567
AclWI GGATC 6 cut(s) 316, 324, 337, 399, 412, 460
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 2 cut(s) 161, 581
AfiI CCNNNNNNNGG 3 cut(s) 93, 518, 591
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 182, 494
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 5 cut(s) 260, 274, 339, 631, 653
AluI AGCT 5 cut(s) 260, 274, 339, 631, 653
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 6 cut(s) 316, 324, 337, 399, 412, 460
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 647
AoxI GGCC 3 cut(s) 80, 133, 281
ApeKI GCWGC 3 cut(s) 50, 271, 653
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 93
Asp700I GAANNNNTTC 2 cut(s) 233, 498
AspS9I GGNCC 3 cut(s) 133, 357, 386
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 407, 473, 533
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 386
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BamHI GGATCC 2 cut(s) 329, 404
BbsI GAAGAC 2 cut(s) 226, 551
BbvI GCAGC 3 cut(s) 62, 283, 640
BccI CCATC 3 cut(s) 344, 395, 443
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 79
BglII AGATCT 1 cut(s) 186
BisI GCNGC 4 cut(s) 51, 272, 568, 654
BlsI GCNGC 4 cut(s) 52, 273, 569, 655
Bme1390I CCNGG 2 cut(s) 55, 485
Bme18I GGWCC 2 cut(s) 357, 386
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 133, 357, 386
BmiI GGNNCC 4 cut(s) 245, 331, 379, 406
BmrFI CCNGG 2 cut(s) 55, 485
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 226, 551
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 113, 647
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 27, 555
BsaWI WCCGGW 3 cut(s) 93, 584, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 518, 591
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 2 cut(s) 388, 397
BseAI TCCGGA 1 cut(s) 647
BseBI CCWGG 1 cut(s) 485
BseCI ATCGAT 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 27, 555
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 93, 518, 591
BseNI ACTGG 2 cut(s) 388, 397
BseRI GAGGAG 3 cut(s) 44, 486, 634
BseXI GCAGC 3 cut(s) 62, 283, 640
BseYI CCCAGC 2 cut(s) 15, 591
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 3 cut(s) 82, 135, 283
BshTI ACCGGT 1 cut(s) 93
BshVI ATCGAT 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 4 cut(s) 54, 94, 585, 648
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 3 cut(s) 93, 518, 591
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 608
BsnI GGCC 3 cut(s) 82, 135, 283
BsoBI CYCGRG 1 cut(s) 261
Bsp13I TCCGGA 1 cut(s) 647
Bsp143I GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
BspACI CCGC 4 cut(s) 110, 555, 557, 567
BspANI GGCC 3 cut(s) 82, 135, 283
BspDI ATCGAT 1 cut(s) 455
BspEI TCCGGA 1 cut(s) 647
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 4 cut(s) 245, 331, 379, 406
BspPI GGATC 6 cut(s) 316, 324, 337, 399, 412, 460
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 2 cut(s) 388, 397
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 27, 555
BssMI GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 207, 521
BstDEI CTNAG 3 cut(s) 119, 632, 666
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 557
BstKTI GATC 9 cut(s) 189, 219, 311, 319, 332, 407, 415, 455, 459
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
BstMWI GCNNNNNNNGC 3 cut(s) 79, 280, 662
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 53, 483
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 3 cut(s) 62, 283, 640
BstV2I GAAGAC 2 cut(s) 226, 551
BstX2I RGATCY 4 cut(s) 186, 308, 329, 404
BstYI RGATCY 4 cut(s) 186, 308, 329, 404
Bsu15I ATCGAT 1 cut(s) 455
BsuRI GGCC 3 cut(s) 82, 135, 283
BsuTUI ATCGAT 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 342, 381
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 133, 357, 386
Cfr42I CCGCGG 1 cut(s) 558
ClaI ATCGAT 1 cut(s) 455
Csp6I GTAC 2 cut(s) 160, 580
CspAI ACCGGT 1 cut(s) 93
CspCI CAANNNNNGTGG 2 cut(s) 589, 624
CviAII CATG 5 cut(s) 429, 460, 514, 541, 661
CviQI GTAC 2 cut(s) 160, 580
DdeI CTNAG 3 cut(s) 119, 632, 666
DpnI GATC 9 cut(s) 188, 218, 310, 318, 331, 406, 414, 454, 458
DpnII GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 357, 386
Eco88I CYCGRG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 483
FaeI CATG 5 cut(s) 432, 463, 517, 544, 664
FaiI YATR 9 cut(s) 144, 210, 430, 441, 461, 515, 542, 573, 662
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 608
FatI CATG 5 cut(s) 428, 459, 513, 540, 660
FauI CCCGC 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 51, 272, 568, 654
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 51, 272, 568, 654
FspBI CTAG 1 cut(s) 336
GluI GCNGC 4 cut(s) 51, 272, 568, 654
GsaI CCCAGC 2 cut(s) 19, 595
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 3 cut(s) 82, 135, 283
HapII CCGG 4 cut(s) 54, 94, 585, 648
Hin1II CATG 5 cut(s) 432, 463, 517, 544, 664
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 4 cut(s) 54, 94, 585, 648
HphI GGTGA 3 cut(s) 407, 473, 533
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 201, 291
Hpy188III TCNNGA 7 cut(s) 170, 182, 247, 263, 314, 626, 648
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 203, 509
HpyCH4III ACNGT 2 cut(s) 207, 521
HpyCH4IV ACGT 2 cut(s) 231, 528
HpyCH4V TGCA 2 cut(s) 517, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 280, 662
HpyF3I CTNAG 3 cut(s) 119, 632, 666
HpySE526I ACGT 2 cut(s) 231, 528
Hsp92II CATG 5 cut(s) 432, 463, 517, 544, 664
Kpn2I TCCGGA 1 cut(s) 647
KspI CCGCGG 1 cut(s) 558
Kzo9I GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
LmnI GCTCC 2 cut(s) 344, 650
Lsp1109I GCAGC 3 cut(s) 62, 283, 640
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 231, 528
MalI GATC 9 cut(s) 188, 218, 310, 318, 331, 406, 414, 454, 458
MboI GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
MboII GAAGA 2 cut(s) 226, 556
MflI RGATCY 4 cut(s) 186, 308, 329, 404
MluCI AATT 4 cut(s) 5, 285, 322, 418
MlyI GAGTC 1 cut(s) 94
MroI TCCGGA 1 cut(s) 647
MroXI GAANNNNTTC 2 cut(s) 233, 498
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 274, 557
MspI CCGG 4 cut(s) 54, 94, 585, 648
MspR9I CCNGG 2 cut(s) 55, 485
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 3 cut(s) 79, 280, 662
NciI CCSGG 1 cut(s) 55
NdeII GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
NlaIII CATG 5 cut(s) 432, 463, 517, 544, 664
NlaIV GGNNCC 4 cut(s) 245, 331, 379, 406
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PdmI GAANNNNTTC 2 cut(s) 233, 498
PfeI GAWTC 2 cut(s) 123, 178
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 4 cut(s) 52, 273, 569, 655
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 2 cut(s) 15, 591
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 4 cut(s) 245, 331, 379, 406
PspPI GGNCC 3 cut(s) 133, 357, 386
PsuI RGATCY 4 cut(s) 186, 308, 329, 404
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 161, 581
RsaNI GTAC 2 cut(s) 160, 580
SacII CCGCGG 1 cut(s) 558
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 4 cut(s) 51, 272, 568, 654
Sau3AI GATC 9 cut(s) 186, 216, 308, 316, 329, 404, 412, 452, 456
Sau96I GGNCC 3 cut(s) 133, 357, 386
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 55, 485
SfaNI GCATC 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 261
Sfr303I CCGCGG 1 cut(s) 558
SgrBI CCGCGG 1 cut(s) 558
SinI GGWCC 2 cut(s) 357, 386
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 626
SmoI CTYRAG 3 cut(s) 128, 261, 626
Sse9I AATT 4 cut(s) 5, 285, 322, 418
SsiI CCGC 4 cut(s) 110, 555, 557, 567
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 53, 483
TaaI ACNGT 2 cut(s) 207, 521
TaiI ACGT 2 cut(s) 234, 531
TaqI TCGA 4 cut(s) 219, 262, 315, 455
TasI AATT 4 cut(s) 5, 285, 322, 418
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 2 cut(s) 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 349, 388
TseI GCWGC 3 cut(s) 50, 271, 653
TspDTI ATGAA 2 cut(s) 185, 557
TspRI CASTG 2 cut(s) 349, 388
VpaK11BI GGWCC 2 cut(s) 357, 386
XapI RAATTY 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 233, 498
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.