Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 31 - 91 | 8.4e-11 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 230 |
| AccII | CGCG | 1 cut(s) | 557 |
| AccIII | TCCGGA | 1 cut(s) | 647 |
| AciI | CCGC | 4 cut(s) | 110, 555, 557, 567 |
| AclWI | GGATC | 6 cut(s) | 316, 324, 337, 399, 412, 460 |
| AcsI | RAATTY | 1 cut(s) | 418 |
| AfaI | GTAC | 2 cut(s) | 161, 581 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 93, 518, 591 |
| AgeI | ACCGGT | 1 cut(s) | 93 |
| AgsI | TTSAA | 2 cut(s) | 182, 494 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AluBI | AGCT | 5 cut(s) | 260, 274, 339, 631, 653 |
| AluI | AGCT | 5 cut(s) | 260, 274, 339, 631, 653 |
| Alw26I | GTCTC | 1 cut(s) | 641 |
| AlwI | GGATC | 6 cut(s) | 316, 324, 337, 399, 412, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| Aor13HI | TCCGGA | 1 cut(s) | 647 |
| AoxI | GGCC | 3 cut(s) | 80, 133, 281 |
| ApeKI | GCWGC | 3 cut(s) | 50, 271, 653 |
| ApoI | RAATTY | 1 cut(s) | 418 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 356, 388 |
| AsiGI | ACCGGT | 1 cut(s) | 93 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 233, 498 |
| AspS9I | GGNCC | 3 cut(s) | 133, 357, 386 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 3 cut(s) | 407, 473, 533 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 2 cut(s) | 357, 386 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 571, 604 |
| BamHI | GGATCC | 2 cut(s) | 329, 404 |
| BbsI | GAAGAC | 2 cut(s) | 226, 551 |
| BbvI | GCAGC | 3 cut(s) | 62, 283, 640 |
| BccI | CCATC | 3 cut(s) | 344, 395, 443 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 641 |
| BfaI | CTAG | 1 cut(s) | 336 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 79 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 4 cut(s) | 51, 272, 568, 654 |
| BlsI | GCNGC | 4 cut(s) | 52, 273, 569, 655 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 485 |
| Bme18I | GGWCC | 2 cut(s) | 357, 386 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 3 cut(s) | 133, 357, 386 |
| BmiI | GGNNCC | 4 cut(s) | 245, 331, 379, 406 |
| BmrFI | CCNGG | 2 cut(s) | 55, 485 |
| BmsI | GCATC | 1 cut(s) | 51 |
| BpiI | GAAGAC | 2 cut(s) | 226, 551 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 647 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| Bsa29I | ATCGAT | 1 cut(s) | 455 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 555 |
| BsaWI | WCCGGW | 3 cut(s) | 93, 584, 647 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 93, 518, 591 |
| Bse118I | RCCGGY | 1 cut(s) | 93 |
| Bse1I | ACTGG | 2 cut(s) | 388, 397 |
| BseAI | TCCGGA | 1 cut(s) | 647 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseCI | ATCGAT | 1 cut(s) | 455 |
| BseDI | CCNNGG | 2 cut(s) | 27, 555 |
| BseGI | GGATG | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 93, 518, 591 |
| BseNI | ACTGG | 2 cut(s) | 388, 397 |
| BseRI | GAGGAG | 3 cut(s) | 44, 486, 634 |
| BseXI | GCAGC | 3 cut(s) | 62, 283, 640 |
| BseYI | CCCAGC | 2 cut(s) | 15, 591 |
| Bsh1236I | CGCG | 1 cut(s) | 557 |
| BshFI | GGCC | 3 cut(s) | 82, 135, 283 |
| BshTI | ACCGGT | 1 cut(s) | 93 |
| BshVI | ATCGAT | 1 cut(s) | 455 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 4 cut(s) | 54, 94, 585, 648 |
| BslFI | GGGAC | 1 cut(s) | 608 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 93, 518, 591 |
| BsmAI | GTCTC | 1 cut(s) | 641 |
| BsmFI | GGGAC | 1 cut(s) | 608 |
| BsnI | GGCC | 3 cut(s) | 82, 135, 283 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp13I | TCCGGA | 1 cut(s) | 647 |
| Bsp143I | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| BspACI | CCGC | 4 cut(s) | 110, 555, 557, 567 |
| BspANI | GGCC | 3 cut(s) | 82, 135, 283 |
| BspDI | ATCGAT | 1 cut(s) | 455 |
| BspEI | TCCGGA | 1 cut(s) | 647 |
| BspFNI | CGCG | 1 cut(s) | 557 |
| BspLI | GGNNCC | 4 cut(s) | 245, 331, 379, 406 |
| BspPI | GGATC | 6 cut(s) | 316, 324, 337, 399, 412, 460 |
| BsrFI | RCCGGY | 1 cut(s) | 93 |
| BsrI | ACTGG | 2 cut(s) | 388, 397 |
| BssAI | RCCGGY | 1 cut(s) | 93 |
| BssECI | CCNNGG | 2 cut(s) | 27, 555 |
| BssMI | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 2 cut(s) | 207, 521 |
| BstDEI | CTNAG | 3 cut(s) | 119, 632, 666 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 1 cut(s) | 42 |
| BstFNI | CGCG | 1 cut(s) | 557 |
| BstKTI | GATC | 9 cut(s) | 189, 219, 311, 319, 332, 407, 415, 455, 459 |
| BstMAI | GTCTC | 1 cut(s) | 641 |
| BstMBI | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 280, 662 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstSCI | CCNGG | 2 cut(s) | 53, 483 |
| BstUI | CGCG | 1 cut(s) | 557 |
| BstV1I | GCAGC | 3 cut(s) | 62, 283, 640 |
| BstV2I | GAAGAC | 2 cut(s) | 226, 551 |
| BstX2I | RGATCY | 4 cut(s) | 186, 308, 329, 404 |
| BstYI | RGATCY | 4 cut(s) | 186, 308, 329, 404 |
| Bsu15I | ATCGAT | 1 cut(s) | 455 |
| BsuRI | GGCC | 3 cut(s) | 82, 135, 283 |
| BsuTUI | ATCGAT | 1 cut(s) | 455 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtsCI | GGATG | 1 cut(s) | 42 |
| BtsIMutI | CAGTG | 2 cut(s) | 342, 381 |
| Cfr10I | RCCGGY | 1 cut(s) | 93 |
| Cfr13I | GGNCC | 3 cut(s) | 133, 357, 386 |
| Cfr42I | CCGCGG | 1 cut(s) | 558 |
| ClaI | ATCGAT | 1 cut(s) | 455 |
| Csp6I | GTAC | 2 cut(s) | 160, 580 |
| CspAI | ACCGGT | 1 cut(s) | 93 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 589, 624 |
| CviAII | CATG | 5 cut(s) | 429, 460, 514, 541, 661 |
| CviQI | GTAC | 2 cut(s) | 160, 580 |
| DdeI | CTNAG | 3 cut(s) | 119, 632, 666 |
| DpnI | GATC | 9 cut(s) | 188, 218, 310, 318, 331, 406, 414, 454, 458 |
| DpnII | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 230 |
| Eco47I | GGWCC | 2 cut(s) | 357, 386 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoO109I | RGGNCCY | 1 cut(s) | 133 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| FaeI | CATG | 5 cut(s) | 432, 463, 517, 544, 664 |
| FaiI | YATR | 9 cut(s) | 144, 210, 430, 441, 461, 515, 542, 573, 662 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 608 |
| FatI | CATG | 5 cut(s) | 428, 459, 513, 540, 660 |
| FauI | CCCGC | 1 cut(s) | 550 |
| Fnu4HI | GCNGC | 4 cut(s) | 51, 272, 568, 654 |
| FokI | GGATG | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 4 cut(s) | 51, 272, 568, 654 |
| FspBI | CTAG | 1 cut(s) | 336 |
| GluI | GCNGC | 4 cut(s) | 51, 272, 568, 654 |
| GsaI | CCCAGC | 2 cut(s) | 19, 595 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HaeIII | GGCC | 3 cut(s) | 82, 135, 283 |
| HapII | CCGG | 4 cut(s) | 54, 94, 585, 648 |
| Hin1II | CATG | 5 cut(s) | 432, 463, 517, 544, 664 |
| HinfI | GANTC | 3 cut(s) | 100, 123, 178 |
| HpaII | CCGG | 4 cut(s) | 54, 94, 585, 648 |
| HphI | GGTGA | 3 cut(s) | 407, 473, 533 |
| Hpy166II | GTNNAC | 1 cut(s) | 99 |
| Hpy188I | TCNGA | 2 cut(s) | 201, 291 |
| Hpy188III | TCNNGA | 7 cut(s) | 170, 182, 247, 263, 314, 626, 648 |
| Hpy8I | GTNNAC | 1 cut(s) | 99 |
| HpyAV | CCTTC | 2 cut(s) | 203, 509 |
| HpyCH4III | ACNGT | 2 cut(s) | 207, 521 |
| HpyCH4IV | ACGT | 2 cut(s) | 231, 528 |
| HpyCH4V | TGCA | 2 cut(s) | 517, 618 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 280, 662 |
| HpyF3I | CTNAG | 3 cut(s) | 119, 632, 666 |
| HpySE526I | ACGT | 2 cut(s) | 231, 528 |
| Hsp92II | CATG | 5 cut(s) | 432, 463, 517, 544, 664 |
| Kpn2I | TCCGGA | 1 cut(s) | 647 |
| KspI | CCGCGG | 1 cut(s) | 558 |
| Kzo9I | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| LmnI | GCTCC | 2 cut(s) | 344, 650 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 283, 640 |
| LweI | GCATC | 1 cut(s) | 51 |
| MaeI | CTAG | 1 cut(s) | 336 |
| MaeII | ACGT | 2 cut(s) | 231, 528 |
| MalI | GATC | 9 cut(s) | 188, 218, 310, 318, 331, 406, 414, 454, 458 |
| MboI | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| MboII | GAAGA | 2 cut(s) | 226, 556 |
| MflI | RGATCY | 4 cut(s) | 186, 308, 329, 404 |
| MluCI | AATT | 4 cut(s) | 5, 285, 322, 418 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MroI | TCCGGA | 1 cut(s) | 647 |
| MroXI | GAANNNNTTC | 2 cut(s) | 233, 498 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 2 cut(s) | 274, 557 |
| MspI | CCGG | 4 cut(s) | 54, 94, 585, 648 |
| MspR9I | CCNGG | 2 cut(s) | 55, 485 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MvnI | CGCG | 1 cut(s) | 557 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 280, 662 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| NlaIII | CATG | 5 cut(s) | 432, 463, 517, 544, 664 |
| NlaIV | GGNNCC | 4 cut(s) | 245, 331, 379, 406 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 525 |
| PdmI | GAANNNNTTC | 2 cut(s) | 233, 498 |
| PfeI | GAWTC | 2 cut(s) | 123, 178 |
| PinAI | ACCGGT | 1 cut(s) | 93 |
| PkrI | GCNGC | 4 cut(s) | 52, 273, 569, 655 |
| PleI | GAGTC | 1 cut(s) | 94 |
| PpsI | GAGTC | 1 cut(s) | 94 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspFI | CCCAGC | 2 cut(s) | 15, 591 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 4 cut(s) | 245, 331, 379, 406 |
| PspPI | GGNCC | 3 cut(s) | 133, 357, 386 |
| PsuI | RGATCY | 4 cut(s) | 186, 308, 329, 404 |
| PvuII | CAGCTG | 1 cut(s) | 274 |
| RsaI | GTAC | 2 cut(s) | 161, 581 |
| RsaNI | GTAC | 2 cut(s) | 160, 580 |
| SacII | CCGCGG | 1 cut(s) | 558 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 4 cut(s) | 51, 272, 568, 654 |
| Sau3AI | GATC | 9 cut(s) | 186, 216, 308, 316, 329, 404, 412, 452, 456 |
| Sau96I | GGNCC | 3 cut(s) | 133, 357, 386 |
| SchI | GAGTC | 1 cut(s) | 94 |
| ScrFI | CCNGG | 2 cut(s) | 55, 485 |
| SfaNI | GCATC | 1 cut(s) | 51 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| Sfr303I | CCGCGG | 1 cut(s) | 558 |
| SgrBI | CCGCGG | 1 cut(s) | 558 |
| SinI | GGWCC | 2 cut(s) | 357, 386 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 3 cut(s) | 128, 261, 626 |
| SmoI | CTYRAG | 3 cut(s) | 128, 261, 626 |
| Sse9I | AATT | 4 cut(s) | 5, 285, 322, 418 |
| SsiI | CCGC | 4 cut(s) | 110, 555, 557, 567 |
| SspMI | CTAG | 1 cut(s) | 336 |
| StyD4I | CCNGG | 2 cut(s) | 53, 483 |
| TaaI | ACNGT | 2 cut(s) | 207, 521 |
| TaiI | ACGT | 2 cut(s) | 234, 531 |
| TaqI | TCGA | 4 cut(s) | 219, 262, 315, 455 |
| TasI | AATT | 4 cut(s) | 5, 285, 322, 418 |
| TauI | GCSGC | 1 cut(s) | 570 |
| TfiI | GAWTC | 2 cut(s) | 123, 178 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 2 cut(s) | 349, 388 |
| TseI | GCWGC | 3 cut(s) | 50, 271, 653 |
| TspDTI | ATGAA | 2 cut(s) | 185, 557 |
| TspRI | CASTG | 2 cut(s) | 349, 388 |
| VpaK11BI | GGWCC | 2 cut(s) | 357, 386 |
| XapI | RAATTY | 1 cut(s) | 418 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XmnI | GAANNNNTTC | 2 cut(s) | 233, 498 |
| XspI | CTAG | 1 cut(s) | 336 |