Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

85482085 .. 85482651

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATTTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGTTCCACTAGTAATGATAGATCCACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGTCTCAACTCCTGCAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

188

Amino Acids

21.08

Weight (kDa)

5.24

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	1.1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AciI	CCGC	3 cut(s)	83, 495, 504
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	4 cut(s)	289, 315, 327, 388
AcsI	RAATTY	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	278, 446
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	4 cut(s)	155, 175, 253, 422
AhlI	ACTAGT	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	1 cut(s)	529
AluI	AGCT	1 cut(s)	529
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	4 cut(s)	289, 315, 327, 388
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	401, 461
BanII	GRGCYC	2 cut(s)	76, 531
BauI	CACGAG	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	199, 479
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 371
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	539
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	544
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	55, 413
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	75, 218, 304
BmrFI	CCNGG	2 cut(s)	55, 413
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	199, 479
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	3 cut(s)	86, 212, 545
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	2 cut(s)	66, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 446
Bse118I	RCCGGY	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	278, 446
BseMII	CTCAG	1 cut(s)	544
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	3 cut(s)	54, 67, 272
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	278, 446
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	76, 531
Bsp143I	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
BspACI	CCGC	3 cut(s)	83, 495, 504
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	543
BspDI	ATCGAT	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	75, 218, 304
BspMAI	CTGCAG	1 cut(s)	548
BspPI	GGATC	4 cut(s)	289, 315, 327, 388
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	92, 530, 564
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	9 cut(s)	162, 192, 284, 292, 323, 335, 343, 383, 387
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	501, 560
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	53, 411
BstSFI	CTRYAG	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	199, 479
BstX2I	RGATCY	4 cut(s)	159, 281, 320, 332
BstYI	RGATCY	4 cut(s)	159, 281, 320, 332
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	5 cut(s)	388, 442, 446, 469, 559
CviJI	RGCY	8 cut(s)	53, 74, 108, 233, 366, 510, 529, 563
CviKI_1	RGCY	8 cut(s)	53, 74, 108, 233, 366, 510, 529, 563
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	3 cut(s)	92, 530, 564
DpnI	GATC	9 cut(s)	161, 191, 283, 291, 322, 334, 342, 382, 386
DpnII	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	529
Eco24I	GRGCYC	2 cut(s)	76, 531
Eco53kI	GAGCTC	1 cut(s)	529
Eco72I	CACGTG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	76, 531
FaeI	CATG	5 cut(s)	391, 445, 449, 472, 562
FaiI	YATR	9 cut(s)	117, 183, 369, 389, 443, 447, 470, 501, 560
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	5 cut(s)	387, 441, 445, 468, 558
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	76, 531
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	3 cut(s)	54, 67, 272
Hin1II	CATG	5 cut(s)	391, 445, 449, 472, 562
HinfI	GANTC	2 cut(s)	96, 151
HpaII	CCGG	3 cut(s)	54, 67, 272
HphI	GGTGA	2 cut(s)	401, 461
Hpy188I	TCNGA	2 cut(s)	264, 484
Hpy188III	TCNNGA	5 cut(s)	143, 155, 220, 236, 287
HpyAV	CCTTC	3 cut(s)	176, 247, 437
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	3 cut(s)	204, 267, 358
HpyCH4V	TGCA	3 cut(s)	445, 546, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	501, 560
HpyF3I	CTNAG	3 cut(s)	92, 530, 564
HpySE526I	ACGT	3 cut(s)	204, 267, 358
Hsp92II	CATG	5 cut(s)	391, 445, 449, 472, 562
Kzo9I	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
LmnI	GCTCC	2 cut(s)	4, 79
LpnPI	CCDG	9 cut(s)	29, 67, 80, 156, 233, 285, 398, 425, 556
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	3 cut(s)	204, 267, 358
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	9 cut(s)	161, 191, 283, 291, 322, 334, 342, 382, 386
MboI	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
MboII	GAAGA	2 cut(s)	199, 484
MflI	RGATCY	4 cut(s)	159, 281, 320, 332
MhlI	GDGCHC	2 cut(s)	76, 531
MluCI	AATT	2 cut(s)	257, 295
Mph1103I	ATGCAT	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	54, 67, 272
MspR9I	CCNGG	2 cut(s)	55, 413
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	501, 560
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
NlaIII	CATG	5 cut(s)	391, 445, 449, 472, 562
NlaIV	GGNNCC	3 cut(s)	75, 218, 304
NmuCI	GTSAC	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	96, 151
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	359
PmlI	CACGTG	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	531
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	75, 218, 304
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	548
PsuI	RGATCY	4 cut(s)	159, 281, 320, 332
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	9 cut(s)	159, 189, 281, 289, 320, 332, 340, 380, 384
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	55, 413
SduI	GDGCHC	2 cut(s)	76, 531
SetI	ASST	6 cut(s)	207, 228, 270, 361, 493, 531
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	544
SmlI	CTYRAG	3 cut(s)	101, 227, 524
SmoI	CTYRAG	3 cut(s)	101, 227, 524
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	2 cut(s)	257, 295
SsiI	CCGC	3 cut(s)	83, 495, 504
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	53, 411
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	3 cut(s)	207, 270, 361
TaqI	TCGA	4 cut(s)	27, 192, 288, 383
TasI	AATT	2 cut(s)	257, 295
TfiI	GAWTC	2 cut(s)	96, 151
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	158, 485
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.