Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

27068301 .. 27073843

Gene Structure 5543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0257600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTAAATTTCGCAGCGATGTTCGGCAGAAGAAGACATCGTGCTCCCAAATCTCCGGCGGCGGTCGGTAAAAAGAAGGATAAGTGTGGGGGAAGCAAGGTGAGACCAGAACCAGATAGCAAGGCCAGAGGATCAAAGCATTCACATGGTAGTGGTGCTGGAGGACCAAATAACACTTCTGCTCGTAGGTCATGGAAAACAGGCACCAAGTCTGAAGAAAGAAAGATTGCCACTTCCCCTCCCCACGATGGTGCTGCGTGTCCTGTTCGATTTTTCATTGTTGTCCGGGATGATTCTAAAGATGGTACCTTGGCAAAAGAATCAAAGATCAACACAGGTACCTTGCCCAAAGAATCAAAGATCAACAGAGTTGATGAGTCTTCTTTATGTTCCAGCGATCTGGAGGTGGACTTTCCTAATGAAACAGATTATCCGGATCTGTCTGAAATCTTCACCGATGGTTATCCCTCTGATGGTAGTAGCGAAGAGGTCACTTTAAACAGCTCCCCTAAGTGGATCCCACTTGACAGTAGATTTGATTTGCGCAATGCTCGTCCTTGCCCCCCCCCCCCCCCCCCACGGCATCATCTAGATCTTCCTGGAACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006541 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009743 GO:0009744 GO:0009853 GO:0009941 GO:0009987 GO:0010033 GO:0015930 GO:0016020 GO:0016041 GO:0016053 GO:0016491 GO:0016638 GO:0016643 GO:0019222 GO:0019676 GO:0019740 GO:0019752 GO:0019899 GO:0031323 GO:0031967 GO:0031974 GO:0031975 GO:0034285 GO:0042221 GO:0043085 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051338 GO:0051347 GO:0055114 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080114 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00630 ko00910 ko01120 map00630 map00910 map01120

Pfam Domains

Protein Families

GATase_2 GXGXG Glu_syn_central Glu_synthase

Protein Analysis

203

Amino Acids

22.09

Weight (kDa)

9.11

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	545
Acc65I	GGTACC	2 cut(s)	305, 338
AccB1I	GGYRCC	3 cut(s)	203, 305, 338
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	2 cut(s)	59, 62
AclWI	GGATC	4 cut(s)	139, 444, 511, 524
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	307, 340
AfiI	CCNNNNNNNGG	4 cut(s)	248, 473, 513, 579
AjnI	CCWGG	1 cut(s)	598
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	4 cut(s)	139, 444, 511, 524
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	14, 254
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp718I	GGTACC	2 cut(s)	305, 338
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	112, 445
AvaII	GGWCC	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	3 cut(s)	203, 305, 338
BbsI	GAAGAC	2 cut(s)	40, 372
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	26, 241
BccI	CCATC	4 cut(s)	242, 296, 452, 467
BceAI	ACGGC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	590
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	3 cut(s)	15, 60, 255
BlsI	GCNGC	3 cut(s)	16, 61, 256
Bme1390I	CCNGG	2 cut(s)	287, 600
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	4 cut(s)	205, 307, 340, 518
BmrFI	CCNGG	2 cut(s)	287, 600
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	40, 372
BpmI	CTGGAG	2 cut(s)	180, 422
BpuMI	CCSGG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	309, 578
BsaWI	WCCGGW	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 473, 513, 579
Bse3DI	GCAATG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	309, 578
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	4 cut(s)	248, 473, 513, 579
BseMI	GCAATG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	26, 241
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	3 cut(s)	203, 305, 338
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	56, 286, 434
BslI	CCNNNNNNNGG	4 cut(s)	248, 473, 513, 579
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
BspACI	CCGC	2 cut(s)	59, 62
BspANI	GGCC	1 cut(s)	125
BspEI	TCCGGA	1 cut(s)	433
BspLI	GGNNCC	4 cut(s)	205, 307, 340, 518
BspPI	GGATC	4 cut(s)	139, 444, 511, 524
BspT107I	GGYRCC	3 cut(s)	203, 305, 338
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	309, 578
BssMI	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	7 cut(s)	134, 330, 363, 400, 439, 519, 595
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
BstMCI	CGRYCG	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	285, 598
BstV1I	GCAGC	2 cut(s)	26, 241
BstV2I	GAAGAC	2 cut(s)	40, 372
BstX2I	RGATCY	3 cut(s)	436, 516, 592
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	3 cut(s)	436, 516, 592
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	295
CfoI	GCGC	1 cut(s)	546
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	306, 339
CviAII	CATG	2 cut(s)	146, 192
CviJI	RGCY	2 cut(s)	125, 504
CviKI_1	RGCY	2 cut(s)	125, 504
CviQI	GTAC	2 cut(s)	306, 339
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	7 cut(s)	133, 329, 362, 399, 438, 518, 594
DpnII	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	149, 195
FaiI	YATR	3 cut(s)	147, 193, 388
FatI	CATG	2 cut(s)	145, 191
Fnu4HI	GCNGC	3 cut(s)	15, 60, 255
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	15, 60, 255
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	3 cut(s)	15, 60, 255
GsuI	CTGGAG	2 cut(s)	180, 422
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	3 cut(s)	56, 286, 434
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	2 cut(s)	149, 195
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HinfI	GANTC	4 cut(s)	293, 320, 353, 377
HpaII	CCGG	3 cut(s)	56, 286, 434
HphI	GGTGA	2 cut(s)	112, 445
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	214, 445, 472
Hpy188III	TCNNGA	3 cut(s)	401, 434, 590
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	530
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	149, 195
HspAI	GCGC	1 cut(s)	544
Kpn2I	TCCGGA	1 cut(s)	433
KpnI	GGTACC	2 cut(s)	309, 342
Kzo9I	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
LmnI	GCTCC	2 cut(s)	49, 509
Lsp1109I	GCAGC	2 cut(s)	26, 241
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	7 cut(s)	133, 329, 362, 399, 438, 518, 594
MboI	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
MboII	GAAGA	7 cut(s)	42, 45, 227, 372, 442, 497, 587
MflI	RGATCY	3 cut(s)	436, 516, 592
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	6 cut(s)	122, 155, 249, 397, 478, 481
MroI	TCCGGA	1 cut(s)	433
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	3 cut(s)	144, 150, 249
MspI	CCGG	3 cut(s)	56, 286, 434
MspR9I	CCNGG	2 cut(s)	287, 600
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	600
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
NlaIII	CATG	2 cut(s)	149, 195
NlaIV	GGNNCC	4 cut(s)	205, 307, 340, 518
NmuCI	GTSAC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	545
OliI	CACNNNNGTG	1 cut(s)	249
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	293, 320, 353
PfoI	TCCNGGA	2 cut(s)	285, 598
PkrI	GCNGC	3 cut(s)	16, 61, 256
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	4 cut(s)	205, 307, 340, 518
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	3 cut(s)	436, 516, 592
RsaI	GTAC	2 cut(s)	307, 340
RsaNI	GTAC	2 cut(s)	306, 339
RseI	CAYNNNNRTG	3 cut(s)	144, 150, 249
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	3 cut(s)	15, 60, 255
Sau3AI	GATC	7 cut(s)	131, 327, 360, 397, 436, 516, 592
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	287, 600
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	102, 191, 311, 340, 344, 408, 492, 506
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	3 cut(s)	144, 150, 249
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	59, 62
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	2 cut(s)	285, 598
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	7
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	293, 320, 353
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	14, 254
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	265, 435
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	7
XbaI	TCTAGA	1 cut(s)	589
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.