Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

9182800 .. 9183445

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0113800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCTCAGAGCAAGAGAGAAGGGATCCCCAGAAAAGGTCAGAGCTGGACGCCAAGGCAAGGCAAGGAGAGACTGTTGTTCCAGGAGGAACTGGTGGCAAAAGTCTTGAGGCTCAGGAGCATCTTGCTGAAGGGCGACACAAGGGAGGGGAGACCAGGAGGGAGCAGATAGGTAATGAAGGGTATCCTGAGATGGGCAAAAAGGGCGGATTGAGCACCAAGGACAAGTCCGGTGGAGAGCGTGCTGCTGAGGAAGGCATTCCTATTGACAAGTCCAAGTATACTAAGAGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

98

Amino Acids

10.62

Weight (kDa)

8.92

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 52	7.7e-18	Small hydrophilic plant seed protein
LEA_5	PF00477	47 - 94	9.5e-21	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	2 cut(s)	20, 33
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	36, 60, 194
AjnI	CCWGG	2 cut(s)	82, 155
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	65, 146
AlwI	GGATC	2 cut(s)	20, 33
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	84, 157
BciVI	GTATCC	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	65, 146
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	84, 157
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	84, 157
BmsI	GCATC	1 cut(s)	130
Bpu10I	CCTNAGC	2 cut(s)	114, 249
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	54, 219
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 60, 194
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	84, 157
BseDI	CCNNGG	2 cut(s)	54, 219
BseLI	CCNNNNNNNGG	3 cut(s)	36, 60, 194
BseMII	CTCAG	4 cut(s)	21, 128, 180, 240
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	36, 60, 194
BsmAI	GTCTC	2 cut(s)	65, 146
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	20, 127, 181, 241
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	20, 33
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	54, 219
BssMI	GATC	1 cut(s)	25
BssNAI	GTATAC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	54, 219
Bst1107I	GTATAC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	84, 157
Bst4CI	ACNGT	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	5 cut(s)	7, 114, 189, 249, 285
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	65, 146
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 213
BstNI	CCWGG	2 cut(s)	84, 157
BstSCI	CCNGG	2 cut(s)	82, 155
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	243
CseI	GACGC	1 cut(s)	59
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviJI	RGCY	3 cut(s)	5, 46, 113
CviKI_1	RGCY	3 cut(s)	5, 46, 113
DdeI	CTNAG	5 cut(s)	7, 114, 189, 249, 285
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	54, 219
Eco31I	GGTCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	82, 155
EcoT14I	CCWWGG	2 cut(s)	54, 219
ErhI	CCWWGG	2 cut(s)	54, 219
FaiI	YATR	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	10, 43
Hpy188III	TCNNGA	3 cut(s)	107, 116, 188
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	4 cut(s)	15, 125, 173, 248
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 213
HpyF3I	CTNAG	5 cut(s)	7, 114, 189, 249, 285
Hsp92I	GRCGYC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	118, 163
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	130
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	16, 80, 103, 140, 153, 244
MroXI	GAANNNNTTC	1 cut(s)	258
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	84, 157
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	84, 157
MwoI	GCNNNNNNNGC	2 cut(s)	204, 213
NdeII	GATC	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	258
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	82, 155
PspGI	CCWGG	2 cut(s)	82, 155
PspN4I	GGNNCC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	25
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	84, 157
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	3 cut(s)	41, 48, 175
SfaNI	GCATC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	82, 155
StyI	CCWWGG	2 cut(s)	54, 219
TaaI	ACNGT	1 cut(s)	76
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.