Rorug05G0257500

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
28902254 .. 28903863
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0257500.1

Sequence Viewer

Length: 591 bp
ATGAGCATGAAGTTCTTCTTGATTTCATGTTGCGGAGTCACGTTGACCGCGCGCGCGACGCGACCCGGTTCTTCTCCTTCTATGTCGCCTTCCGCTCCCGGAAAGAAGATATCCCCCTCGCGCGGAGGAGTGTCGTCTTCGTCTCCCGCACGCGGAAACGCCCGCGGGAAAGTGTCGTCTTCATCCCCCTCGCGCAGAGGGATGTCGTCTACATCTTCCCGGCGGCGGGGGCCTGCAGGGCACGGATTTTCTAATCCGCGCGTTGTTGCTGTCAGACAGACGAGGTCGGAACTTGGGTTGGCACCGACAGCACAGCGGCTGCCGCGGCGGAAGAGCGGGAGGCCGGTGGGGTCGGCGGCTTCGGCCTTGCCTTATGCCGAGTGGACGCCGTCGCTGTGCACGATCGCCGAGGACAACGTCGTTGTCGTGAGGAGATCCGTTGGGGATCGGACGCCCAGCATTGAGCGAGCGGTTAACGGAAAGAGTGGTAGAGAAATGTCGCGAGTTCAAAGCCGCAGCCACACCGATGATTACGGGCGAGCTTCAGTCACAGTTATTCCGGCGTTTACTCCAACGCCGTTCTTGTTTTGA

Protein Analysis

196

Amino Acids

20.68

Weight (kDa)

11.83

Isoelectric Point (pI)

82.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000231)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccBSI CCGCTC 3 cut(s) 95, 336, 470
AccI GTMKAC 1 cut(s) 209
AclWI GGATC 2 cut(s) 429, 453
AcuI CTGAAG 1 cut(s) 528
AcyI GRCGYC 2 cut(s) 386, 452
AfiI CCNNNNNNNGG 4 cut(s) 122, 152, 225, 226
AgsI TTSAA 1 cut(s) 509
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 147
Alw44I GTGCAC 1 cut(s) 397
AlwI GGATC 2 cut(s) 429, 453
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 3 cut(s) 230, 341, 363
ApaLI GTGCAC 1 cut(s) 397
ApeKI GCWGC 2 cut(s) 319, 516
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 6 cut(s) 52, 54, 56, 123, 195, 261
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 3 cut(s) 66, 99, 220
BaeGI GKGCMC 2 cut(s) 243, 401
BanI GGYRCC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 129, 171
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 306, 528
BceAI ACGGC 2 cut(s) 373, 562
BcnI CCSGG 3 cut(s) 66, 99, 220
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 8 cut(s) 224, 317, 320, 323, 326, 357, 514, 517
BlsI GCNGC 8 cut(s) 225, 318, 321, 324, 327, 358, 515, 518
Bme1390I CCNGG 3 cut(s) 66, 99, 220
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 231, 303
BmrFI CCNGG 3 cut(s) 66, 99, 220
BpiI GAAGAC 2 cut(s) 129, 171
BpuMI CCSGG 3 cut(s) 66, 99, 220
BsaHI GRCGYC 2 cut(s) 386, 452
BsaJI CCNNGG 3 cut(s) 163, 323, 408
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 152, 225, 226
Bse118I RCCGGY 1 cut(s) 343
BseDI CCNNGG 3 cut(s) 163, 323, 408
BseGI GGATG 2 cut(s) 182, 207
BseLI CCNNNNNNNGG 4 cut(s) 122, 152, 225, 226
BsePI GCGCGC 2 cut(s) 50, 52
BseRI GAGGAG 2 cut(s) 141, 445
BseSI GKGCMC 2 cut(s) 243, 401
BseXI GCAGC 2 cut(s) 306, 528
BseYI CCCAGC 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 232, 343, 365
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 5 cut(s) 66, 99, 220, 344, 560
BslI CCNNNNNNNGG 4 cut(s) 122, 152, 225, 226
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 3 cut(s) 232, 343, 365
Bsp1286I GDGCHC 2 cut(s) 243, 401
Bsp143I GATC 3 cut(s) 402, 434, 445
Bsp68I TCGCGA 1 cut(s) 502
BspANI GGCC 3 cut(s) 232, 343, 365
BspLI GGNNCC 2 cut(s) 231, 303
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 2 cut(s) 429, 453
BspQI GCTCTTC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 301
BsrBI CCGCTC 3 cut(s) 95, 336, 470
BsrFI RCCGGY 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 163, 323, 408
BssHII GCGCGC 2 cut(s) 50, 52
BssMI GATC 3 cut(s) 402, 434, 445
BssNI GRCGYC 2 cut(s) 386, 452
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 2 cut(s) 386, 452
BstC8I GCNNGC 7 cut(s) 52, 54, 151, 163, 234, 468, 540
BstDSI CCRYGG 2 cut(s) 163, 323
BstF5I GGATG 2 cut(s) 182, 207
BstHHI GCGC 6 cut(s) 52, 54, 56, 123, 195, 261
BstKTI GATC 3 cut(s) 405, 437, 448
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 3 cut(s) 402, 434, 445
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 7 cut(s) 58, 229, 238, 308, 322, 325, 362
BstSCI CCNGG 3 cut(s) 64, 97, 218
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 2 cut(s) 243, 401
BstV1I GCAGC 2 cut(s) 306, 528
BstV2I GAAGAC 2 cut(s) 129, 171
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 3 cut(s) 232, 343, 365
BtgI CCRYGG 2 cut(s) 163, 323
BtsCI GGATG 2 cut(s) 182, 207
BtuMI TCGCGA 1 cut(s) 502
Cac8I GCNNGC 7 cut(s) 52, 54, 151, 163, 234, 468, 540
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 6 cut(s) 52, 54, 56, 123, 195, 261
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 230
Cfr42I CCGCGG 2 cut(s) 166, 326
CseI GACGC 3 cut(s) 67, 394, 460
CviAII CATG 2 cut(s) 7, 27
CviJI RGCY 8 cut(s) 232, 319, 343, 359, 365, 513, 519, 542
CviKI_1 RGCY 8 cut(s) 232, 319, 343, 359, 365, 513, 519, 542
DpnI GATC 3 cut(s) 404, 436, 447
DpnII GATC 3 cut(s) 402, 434, 445
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 343
Eco32I GATATC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 230
EcoRV GATATC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 10, 30
FaiI YATR 4 cut(s) 8, 28, 83, 375
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 2 cut(s) 6, 26
FauI CCCGC 5 cut(s) 154, 158, 170, 219, 329
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 8 cut(s) 224, 317, 320, 323, 326, 357, 514, 517
FokI GGATG 2 cut(s) 169, 214
Fsp4HI GCNGC 8 cut(s) 224, 317, 320, 323, 326, 357, 514, 517
GlaI GCGC 6 cut(s) 51, 53, 55, 122, 194, 260
GluI GCNGC 8 cut(s) 224, 317, 320, 323, 326, 357, 514, 517
GsaI CCCAGC 1 cut(s) 459
HaeIII GGCC 3 cut(s) 232, 343, 365
HapII CCGG 5 cut(s) 66, 99, 220, 344, 560
HgaI GACGC 3 cut(s) 67, 394, 460
HhaI GCGC 6 cut(s) 52, 54, 56, 123, 195, 261
Hin1I GRCGYC 2 cut(s) 386, 452
Hin1II CATG 2 cut(s) 10, 30
Hin6I GCGC 6 cut(s) 50, 52, 54, 121, 193, 259
HinP1I GCGC 6 cut(s) 50, 52, 54, 121, 193, 259
HincII GTYRAC 2 cut(s) 45, 475
HindII GTYRAC 2 cut(s) 45, 475
HinfI GANTC 1 cut(s) 36
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 5 cut(s) 66, 99, 220, 344, 560
Hpy166II GTNNAC 6 cut(s) 45, 210, 384, 399, 475, 567
Hpy188I TCNGA 3 cut(s) 275, 289, 450
Hpy188III TCNNGA 3 cut(s) 19, 427, 501
Hpy8I GTNNAC 6 cut(s) 45, 210, 384, 399, 475, 567
Hpy99I CGWCG 3 cut(s) 61, 394, 422
HpyAV CCTTC 2 cut(s) 87, 99
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 41, 417
HpyCH4V TGCA 2 cut(s) 236, 399
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 229, 238, 308, 322, 325, 362
HpySE526I ACGT 2 cut(s) 41, 417
Hsp92I GRCGYC 2 cut(s) 386, 452
Hsp92II CATG 2 cut(s) 10, 30
HspAI GCGC 6 cut(s) 50, 52, 54, 121, 193, 259
KspAI GTTAAC 1 cut(s) 475
KspI CCGCGG 2 cut(s) 166, 326
Kzo9I GATC 3 cut(s) 402, 434, 445
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 79, 112, 222, 233, 246, 357, 469, 573
Lsp1109I GCAGC 2 cut(s) 306, 528
MaeII ACGT 2 cut(s) 41, 417
MaeIII GTNAC 2 cut(s) 37, 547
MalI GATC 3 cut(s) 404, 436, 447
MauBI CGCGCGCG 2 cut(s) 50, 52
MbiI CCGCTC 3 cut(s) 95, 336, 470
MboI GATC 3 cut(s) 402, 434, 445
MboII GAAGA 7 cut(s) 7, 63, 118, 129, 171, 207, 343
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 243, 401
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 8 cut(s) 119, 127, 191, 199, 276, 333, 403, 423
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 3 cut(s) 165, 316, 325
MspI CCGG 5 cut(s) 66, 99, 220, 344, 560
MspR9I CCNGG 3 cut(s) 66, 99, 220
MwoI GCNNNNNNNGC 7 cut(s) 58, 229, 238, 308, 322, 325, 362
NciI CCSGG 3 cut(s) 66, 99, 220
NdeII GATC 3 cut(s) 402, 434, 445
NlaIII CATG 2 cut(s) 10, 30
NlaIV GGNNCC 2 cut(s) 231, 303
NmeAIII GCCGAG 2 cut(s) 403, 433
NmuCI GTSAC 2 cut(s) 37, 547
NruI TCGCGA 1 cut(s) 502
PauI GCGCGC 2 cut(s) 50, 52
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 423
PdmI GAANNNNTTC 1 cut(s) 14
PflFI GACNNNGTC 3 cut(s) 283, 388, 416
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 8 cut(s) 225, 318, 321, 324, 327, 358, 515, 518
Ple19I CGATCG 1 cut(s) 405
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 231, 303
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 434
PsyI GACNNNGTC 3 cut(s) 283, 388, 416
PteI GCGCGC 2 cut(s) 50, 52
PvuI CGATCG 1 cut(s) 405
RruI TCGCGA 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 525
SacII CCGCGG 2 cut(s) 166, 326
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 8 cut(s) 224, 317, 320, 323, 326, 357, 514, 517
Sau3AI GATC 3 cut(s) 402, 434, 445
Sau96I GGNCC 1 cut(s) 230
SbfI CCTGCAGG 1 cut(s) 238
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 66, 99, 220
SdaI CCTGCAGG 1 cut(s) 238
SduI GDGCHC 2 cut(s) 243, 401
SetI ASST 4 cut(s) 44, 287, 420, 544
SfcI CTRYAG 1 cut(s) 234
Sfr303I CCGCGG 2 cut(s) 166, 326
SgrBI CCGCGG 2 cut(s) 166, 326
SmiMI CAYNNNNRTG 1 cut(s) 525
Sse8387I CCTGCAGG 1 cut(s) 238
StyD4I CCNGG 3 cut(s) 64, 97, 218
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 44, 420
TauI GCSGC 6 cut(s) 226, 319, 325, 328, 359, 516
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 2 cut(s) 37, 547
TseI GCWGC 2 cut(s) 319, 516
Tsp45I GTSAC 2 cut(s) 37, 547
TspDTI ATGAA 3 cut(s) 15, 23, 171
TspGWI ACGGA 3 cut(s) 258, 427, 492
Tth111I GACNNNGTC 3 cut(s) 283, 388, 416
VneI GTGCAC 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.