Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AccBSI | CCGCTC | 3 cut(s) | 95, 336, 470 |
| AccI | GTMKAC | 1 cut(s) | 209 |
| AclWI | GGATC | 2 cut(s) | 429, 453 |
| AcuI | CTGAAG | 1 cut(s) | 528 |
| AcyI | GRCGYC | 2 cut(s) | 386, 452 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 122, 152, 225, 226 |
| AgsI | TTSAA | 1 cut(s) | 509 |
| AluBI | AGCT | 1 cut(s) | 542 |
| AluI | AGCT | 1 cut(s) | 542 |
| Alw21I | GWGCWC | 1 cut(s) | 401 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| Alw44I | GTGCAC | 1 cut(s) | 397 |
| AlwI | GGATC | 2 cut(s) | 429, 453 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 319 |
| AoxI | GGCC | 3 cut(s) | 230, 341, 363 |
| ApaLI | GTGCAC | 1 cut(s) | 397 |
| ApeKI | GCWGC | 2 cut(s) | 319, 516 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 14 |
| AspLEI | GCGC | 6 cut(s) | 52, 54, 56, 123, 195, 261 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuC2I | CCSGG | 3 cut(s) | 66, 99, 220 |
| BaeGI | GKGCMC | 2 cut(s) | 243, 401 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BbsI | GAAGAC | 2 cut(s) | 129, 171 |
| Bbv12I | GWGCWC | 1 cut(s) | 401 |
| BbvI | GCAGC | 2 cut(s) | 306, 528 |
| BceAI | ACGGC | 2 cut(s) | 373, 562 |
| BcnI | CCSGG | 3 cut(s) | 66, 99, 220 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 238 |
| BisI | GCNGC | 8 cut(s) | 224, 317, 320, 323, 326, 357, 514, 517 |
| BlsI | GCNGC | 8 cut(s) | 225, 318, 321, 324, 327, 358, 515, 518 |
| Bme1390I | CCNGG | 3 cut(s) | 66, 99, 220 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmiI | GGNNCC | 2 cut(s) | 231, 303 |
| BmrFI | CCNGG | 3 cut(s) | 66, 99, 220 |
| BpiI | GAAGAC | 2 cut(s) | 129, 171 |
| BpuMI | CCSGG | 3 cut(s) | 66, 99, 220 |
| BsaHI | GRCGYC | 2 cut(s) | 386, 452 |
| BsaJI | CCNNGG | 3 cut(s) | 163, 323, 408 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 122, 152, 225, 226 |
| Bse118I | RCCGGY | 1 cut(s) | 343 |
| BseDI | CCNNGG | 3 cut(s) | 163, 323, 408 |
| BseGI | GGATG | 2 cut(s) | 182, 207 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 122, 152, 225, 226 |
| BsePI | GCGCGC | 2 cut(s) | 50, 52 |
| BseRI | GAGGAG | 2 cut(s) | 141, 445 |
| BseSI | GKGCMC | 2 cut(s) | 243, 401 |
| BseXI | GCAGC | 2 cut(s) | 306, 528 |
| BseYI | CCCAGC | 1 cut(s) | 455 |
| Bsh1285I | CGRYCG | 1 cut(s) | 405 |
| BshFI | GGCC | 3 cut(s) | 232, 343, 365 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BsiEI | CGRYCG | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 1 cut(s) | 401 |
| BsiSI | CCGG | 5 cut(s) | 66, 99, 220, 344, 560 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 122, 152, 225, 226 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsmBI | CGTCTC | 1 cut(s) | 147 |
| BsnI | GGCC | 3 cut(s) | 232, 343, 365 |
| Bsp1286I | GDGCHC | 2 cut(s) | 243, 401 |
| Bsp143I | GATC | 3 cut(s) | 402, 434, 445 |
| Bsp68I | TCGCGA | 1 cut(s) | 502 |
| BspANI | GGCC | 3 cut(s) | 232, 343, 365 |
| BspLI | GGNNCC | 2 cut(s) | 231, 303 |
| BspMAI | CTGCAG | 1 cut(s) | 238 |
| BspPI | GGATC | 2 cut(s) | 429, 453 |
| BspQI | GCTCTTC | 1 cut(s) | 326 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BsrBI | CCGCTC | 3 cut(s) | 95, 336, 470 |
| BsrFI | RCCGGY | 1 cut(s) | 343 |
| BssAI | RCCGGY | 1 cut(s) | 343 |
| BssECI | CCNNGG | 3 cut(s) | 163, 323, 408 |
| BssHII | GCGCGC | 2 cut(s) | 50, 52 |
| BssMI | GATC | 3 cut(s) | 402, 434, 445 |
| BssNI | GRCGYC | 2 cut(s) | 386, 452 |
| Bst4CI | ACNGT | 1 cut(s) | 553 |
| Bst6I | CTCTTC | 1 cut(s) | 326 |
| BstACI | GRCGYC | 2 cut(s) | 386, 452 |
| BstC8I | GCNNGC | 7 cut(s) | 52, 54, 151, 163, 234, 468, 540 |
| BstDSI | CCRYGG | 2 cut(s) | 163, 323 |
| BstF5I | GGATG | 2 cut(s) | 182, 207 |
| BstHHI | GCGC | 6 cut(s) | 52, 54, 56, 123, 195, 261 |
| BstKTI | GATC | 3 cut(s) | 405, 437, 448 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 3 cut(s) | 402, 434, 445 |
| BstMCI | CGRYCG | 1 cut(s) | 405 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 58, 229, 238, 308, 322, 325, 362 |
| BstSCI | CCNGG | 3 cut(s) | 64, 97, 218 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstSLI | GKGCMC | 2 cut(s) | 243, 401 |
| BstV1I | GCAGC | 2 cut(s) | 306, 528 |
| BstV2I | GAAGAC | 2 cut(s) | 129, 171 |
| BstX2I | RGATCY | 1 cut(s) | 434 |
| BstYI | RGATCY | 1 cut(s) | 434 |
| BsuRI | GGCC | 3 cut(s) | 232, 343, 365 |
| BtgI | CCRYGG | 2 cut(s) | 163, 323 |
| BtsCI | GGATG | 2 cut(s) | 182, 207 |
| BtuMI | TCGCGA | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 7 cut(s) | 52, 54, 151, 163, 234, 468, 540 |
| CaiI | CAGNNNCTG | 1 cut(s) | 319 |
| CfoI | GCGC | 6 cut(s) | 52, 54, 56, 123, 195, 261 |
| Cfr10I | RCCGGY | 1 cut(s) | 343 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| Cfr42I | CCGCGG | 2 cut(s) | 166, 326 |
| CseI | GACGC | 3 cut(s) | 67, 394, 460 |
| CviAII | CATG | 2 cut(s) | 7, 27 |
| CviJI | RGCY | 8 cut(s) | 232, 319, 343, 359, 365, 513, 519, 542 |
| CviKI_1 | RGCY | 8 cut(s) | 232, 319, 343, 359, 365, 513, 519, 542 |
| DpnI | GATC | 3 cut(s) | 404, 436, 447 |
| DpnII | GATC | 3 cut(s) | 402, 434, 445 |
| Eam1104I | CTCTTC | 1 cut(s) | 326 |
| EarI | CTCTTC | 1 cut(s) | 326 |
| EciI | GGCGGA | 1 cut(s) | 343 |
| Eco32I | GATATC | 1 cut(s) | 111 |
| Eco57I | CTGAAG | 1 cut(s) | 528 |
| EcoO109I | RGGNCCY | 1 cut(s) | 230 |
| EcoRV | GATATC | 1 cut(s) | 111 |
| Esp3I | CGTCTC | 1 cut(s) | 147 |
| FaeI | CATG | 2 cut(s) | 10, 30 |
| FaiI | YATR | 4 cut(s) | 8, 28, 83, 375 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 34 |
| FatI | CATG | 2 cut(s) | 6, 26 |
| FauI | CCCGC | 5 cut(s) | 154, 158, 170, 219, 329 |
| FblI | GTMKAC | 1 cut(s) | 209 |
| Fnu4HI | GCNGC | 8 cut(s) | 224, 317, 320, 323, 326, 357, 514, 517 |
| FokI | GGATG | 2 cut(s) | 169, 214 |
| Fsp4HI | GCNGC | 8 cut(s) | 224, 317, 320, 323, 326, 357, 514, 517 |
| GlaI | GCGC | 6 cut(s) | 51, 53, 55, 122, 194, 260 |
| GluI | GCNGC | 8 cut(s) | 224, 317, 320, 323, 326, 357, 514, 517 |
| GsaI | CCCAGC | 1 cut(s) | 459 |
| HaeIII | GGCC | 3 cut(s) | 232, 343, 365 |
| HapII | CCGG | 5 cut(s) | 66, 99, 220, 344, 560 |
| HgaI | GACGC | 3 cut(s) | 67, 394, 460 |
| HhaI | GCGC | 6 cut(s) | 52, 54, 56, 123, 195, 261 |
| Hin1I | GRCGYC | 2 cut(s) | 386, 452 |
| Hin1II | CATG | 2 cut(s) | 10, 30 |
| Hin6I | GCGC | 6 cut(s) | 50, 52, 54, 121, 193, 259 |
| HinP1I | GCGC | 6 cut(s) | 50, 52, 54, 121, 193, 259 |
| HincII | GTYRAC | 2 cut(s) | 45, 475 |
| HindII | GTYRAC | 2 cut(s) | 45, 475 |
| HinfI | GANTC | 1 cut(s) | 36 |
| HpaI | GTTAAC | 1 cut(s) | 475 |
| HpaII | CCGG | 5 cut(s) | 66, 99, 220, 344, 560 |
| Hpy166II | GTNNAC | 6 cut(s) | 45, 210, 384, 399, 475, 567 |
| Hpy188I | TCNGA | 3 cut(s) | 275, 289, 450 |
| Hpy188III | TCNNGA | 3 cut(s) | 19, 427, 501 |
| Hpy8I | GTNNAC | 6 cut(s) | 45, 210, 384, 399, 475, 567 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 394, 422 |
| HpyAV | CCTTC | 2 cut(s) | 87, 99 |
| HpyCH4III | ACNGT | 1 cut(s) | 553 |
| HpyCH4IV | ACGT | 2 cut(s) | 41, 417 |
| HpyCH4V | TGCA | 2 cut(s) | 236, 399 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 58, 229, 238, 308, 322, 325, 362 |
| HpySE526I | ACGT | 2 cut(s) | 41, 417 |
| Hsp92I | GRCGYC | 2 cut(s) | 386, 452 |
| Hsp92II | CATG | 2 cut(s) | 10, 30 |
| HspAI | GCGC | 6 cut(s) | 50, 52, 54, 121, 193, 259 |
| KspAI | GTTAAC | 1 cut(s) | 475 |
| KspI | CCGCGG | 2 cut(s) | 166, 326 |
| Kzo9I | GATC | 3 cut(s) | 402, 434, 445 |
| LguI | GCTCTTC | 1 cut(s) | 326 |
| LmnI | GCTCC | 1 cut(s) | 100 |
| LpnPI | CCDG | 8 cut(s) | 79, 112, 222, 233, 246, 357, 469, 573 |
| Lsp1109I | GCAGC | 2 cut(s) | 306, 528 |
| MaeII | ACGT | 2 cut(s) | 41, 417 |
| MaeIII | GTNAC | 2 cut(s) | 37, 547 |
| MalI | GATC | 3 cut(s) | 404, 436, 447 |
| MauBI | CGCGCGCG | 2 cut(s) | 50, 52 |
| MbiI | CCGCTC | 3 cut(s) | 95, 336, 470 |
| MboI | GATC | 3 cut(s) | 402, 434, 445 |
| MboII | GAAGA | 7 cut(s) | 7, 63, 118, 129, 171, 207, 343 |
| MflI | RGATCY | 1 cut(s) | 434 |
| MhlI | GDGCHC | 2 cut(s) | 243, 401 |
| MlyI | GAGTC | 1 cut(s) | 45 |
| MmeI | TCCRAC | 1 cut(s) | 267 |
| MnlI | CCTC | 8 cut(s) | 119, 127, 191, 199, 276, 333, 403, 423 |
| MroXI | GAANNNNTTC | 1 cut(s) | 14 |
| MseI | TTAA | 1 cut(s) | 474 |
| MslI | CAYNNNNRTG | 1 cut(s) | 525 |
| MspA1I | CMGCKG | 3 cut(s) | 165, 316, 325 |
| MspI | CCGG | 5 cut(s) | 66, 99, 220, 344, 560 |
| MspR9I | CCNGG | 3 cut(s) | 66, 99, 220 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 58, 229, 238, 308, 322, 325, 362 |
| NciI | CCSGG | 3 cut(s) | 66, 99, 220 |
| NdeII | GATC | 3 cut(s) | 402, 434, 445 |
| NlaIII | CATG | 2 cut(s) | 10, 30 |
| NlaIV | GGNNCC | 2 cut(s) | 231, 303 |
| NmeAIII | GCCGAG | 2 cut(s) | 403, 433 |
| NmuCI | GTSAC | 2 cut(s) | 37, 547 |
| NruI | TCGCGA | 1 cut(s) | 502 |
| PauI | GCGCGC | 2 cut(s) | 50, 52 |
| PciSI | GCTCTTC | 1 cut(s) | 326 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 398, 423 |
| PdmI | GAANNNNTTC | 1 cut(s) | 14 |
| PflFI | GACNNNGTC | 3 cut(s) | 283, 388, 416 |
| PfoI | TCCNGGA | 1 cut(s) | 97 |
| PkrI | GCNGC | 8 cut(s) | 225, 318, 321, 324, 327, 358, 515, 518 |
| Ple19I | CGATCG | 1 cut(s) | 405 |
| PleI | GAGTC | 1 cut(s) | 44 |
| PpsI | GAGTC | 1 cut(s) | 44 |
| PspFI | CCCAGC | 1 cut(s) | 455 |
| PspN4I | GGNNCC | 2 cut(s) | 231, 303 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| PstI | CTGCAG | 1 cut(s) | 238 |
| PstNI | CAGNNNCTG | 1 cut(s) | 319 |
| PsuI | RGATCY | 1 cut(s) | 434 |
| PsyI | GACNNNGTC | 3 cut(s) | 283, 388, 416 |
| PteI | GCGCGC | 2 cut(s) | 50, 52 |
| PvuI | CGATCG | 1 cut(s) | 405 |
| RruI | TCGCGA | 1 cut(s) | 502 |
| RseI | CAYNNNNRTG | 1 cut(s) | 525 |
| SacII | CCGCGG | 2 cut(s) | 166, 326 |
| SapI | GCTCTTC | 1 cut(s) | 326 |
| SaqAI | TTAA | 1 cut(s) | 474 |
| SatI | GCNGC | 8 cut(s) | 224, 317, 320, 323, 326, 357, 514, 517 |
| Sau3AI | GATC | 3 cut(s) | 402, 434, 445 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| SbfI | CCTGCAGG | 1 cut(s) | 238 |
| SchI | GAGTC | 1 cut(s) | 45 |
| ScrFI | CCNGG | 3 cut(s) | 66, 99, 220 |
| SdaI | CCTGCAGG | 1 cut(s) | 238 |
| SduI | GDGCHC | 2 cut(s) | 243, 401 |
| SetI | ASST | 4 cut(s) | 44, 287, 420, 544 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| Sfr303I | CCGCGG | 2 cut(s) | 166, 326 |
| SgrBI | CCGCGG | 2 cut(s) | 166, 326 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 525 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 238 |
| StyD4I | CCNGG | 3 cut(s) | 64, 97, 218 |
| TaaI | ACNGT | 1 cut(s) | 553 |
| TaiI | ACGT | 2 cut(s) | 44, 420 |
| TauI | GCSGC | 6 cut(s) | 226, 319, 325, 328, 359, 516 |
| Tru1I | TTAA | 1 cut(s) | 474 |
| Tru9I | TTAA | 1 cut(s) | 474 |
| TseFI | GTSAC | 2 cut(s) | 37, 547 |
| TseI | GCWGC | 2 cut(s) | 319, 516 |
| Tsp45I | GTSAC | 2 cut(s) | 37, 547 |
| TspDTI | ATGAA | 3 cut(s) | 15, 23, 171 |
| TspGWI | ACGGA | 3 cut(s) | 258, 427, 492 |
| Tth111I | GACNNNGTC | 3 cut(s) | 283, 388, 416 |
| VneI | GTGCAC | 1 cut(s) | 397 |
| XmiI | GTMKAC | 1 cut(s) | 209 |
| XmnI | GAANNNNTTC | 1 cut(s) | 14 |