Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

54441067 .. 54443661

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0448400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCTTCTGTCACACTCTCCCTTCCCGCCATACCCACTCCATCACTCTCACTTCAATCTCTCGGTTCACTATCCAAGCCCAAACCCGAACTCAGACCCAAACCCAGACCCTTTCCCTCCCATACACTAAACAAAACTTCCTTCCGGCCTTTGACTTCTCCCCACCACCACCGGTTAAGGGTCACGTCACAGCTCCGGCACCCTATCATCTCTCCGGACGACCACTGGGGTTTATGGACCACACTCTTCGCCACCGGCGCTTTCGGCCTCTGGTCGGAGAAGACCAAGATTGGTGGGATGGTGAGTGCTGCTCTGGTAAGCACTTTAGTTGGGCTTGCAGCTAGTAATGTAGGGTTAATTCCTCATGAAGCGGGTGCTTATTCGATTGTGTTGGAGTTTCTTCTGCCATTATCTATTCCATTGCTGTTGTTTAGAGCAGACTTGCGCAATGTGGCTCGTTCCACTGGGACTTTGCTTCTAGCTTTCCTGCTTGGATCAGTTGCGACTATGGTTGGGACTCTGGTGGCGTTTCTGATGGTGCCTATGCGGTCACTTGGTCAAGATAATTGGAAGATTGCTGCTGCTCTGATGGGTAGTTACATTGGTGGATCTGTTAACTATGTTGCGATTTCAGAGGCTCTCGGTGTTTCCCCATCAGTTATGGCTGCAGGAGTAGCAGCAGACAATGTCATTTGCGCTCTCTACTTCATAGTCTTGTTTGCTTTCGCCTCTAAAATACCTCCTGAGGCCTCAACATCAACTAATGATGTTTCAATGAAAATGGAATCCCAAATTGAAAGGAAACTCCCAGTACTAGAAACTGCAACCGCTCTTGCTACATCTTTTGTGATATGCAAGGCTTCCACACATCTCACAAGATTATGTGGAATTCAAGGAGGCAACCTGCCAGTAATAACAGCTCTTGTAGTAATTTTGGCTACTCTTCTTCCAACTTATTTCGCATACCTTGCACCTTCCGGTGAAACTATTGCTCTAGTCTTGATGCAGGTGTTCTTTGCCGTGCTGGGTGCTAGTGGGAGCATATGGAATGTGATGATCACTGCTCCTAGTATATTTGTGTTTGCTTTAGTTCAAGTAACTGTCCATCTAGCTTTGGTCCTGGGATTGGGAAAGCTATTTCACTTTGATTTAAAGCTTTTATTTTTGGCATCAAACGCCAATATTGGAGGGCCAACGACAGCAGGTGGAATGGCCACCGCGAAAGGATGGCATTCTTTGGTTGTTCCGGGAATTCTTGCAGGCATTTTTGGTGTTTCCATTGCAACTTTTCTGGGCATTGGTTTTGGAATCACAGTCCTTAAACACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

443

Amino Acids

46.63

Weight (kDa)

9.65

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF819	PF05684	81 - 441	2.9e-120	Protein of unknown function (DUF819)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	997, 1193
Acc16I	TGCGCA	1 cut(s)	446
Acc36I	ACCTGC	3 cut(s)	912, 997, 1193
AccB1I	GGYRCC	2 cut(s)	198, 538
AccBSI	CCGCTC	1 cut(s)	830
AccII	CGCG	1 cut(s)	1220
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	5 cut(s)	27, 371, 547, 828, 1218
AclWI	GGATC	2 cut(s)	502, 616
AcoI	YGGCCR	1 cut(s)	1212
AcsI	RAATTY	2 cut(s)	888, 1251
AfaI	GTAC	1 cut(s)	813
AfiI	CCNNNNNNNGG	3 cut(s)	178, 274, 1126
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	5 cut(s)	56, 774, 797, 893, 1094
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	1119
AluBI	AGCT	7 cut(s)	193, 341, 482, 920, 1112, 1135, 1156
AluI	AGCT	7 cut(s)	193, 341, 482, 920, 1112, 1135, 1156
AlwI	GGATC	2 cut(s)	502, 616
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	5 cut(s)	146, 265, 747, 1190, 1212
ApeKI	GCWGC	6 cut(s)	308, 338, 578, 581, 665, 677
ApoI	RAATTY	2 cut(s)	888, 1251
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	260, 447, 698
AspS9I	GGNCC	3 cut(s)	237, 1117, 1190
AsuC2I	CCSGG	1 cut(s)	1248
AsuHPI	GGTGA	2 cut(s)	313, 992
AvaII	GGWCC	2 cut(s)	237, 1117
AxyI	CCTNAGG	1 cut(s)	744
BalI	TGGCCA	1 cut(s)	1214
BanI	GGYRCC	2 cut(s)	198, 538
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	6 cut(s)	295, 350, 565, 568, 652, 689
BccI	CCATC	7 cut(s)	49, 292, 529, 583, 661, 1113, 1221
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	1 cut(s)	1121
BclI	TGATCA	1 cut(s)	1056
BcnI	CCSGG	1 cut(s)	1248
BfaI	CTAG	7 cut(s)	342, 479, 815, 995, 1032, 1068, 1109
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	3 cut(s)	912, 997, 1193
BisI	GCNGC	6 cut(s)	309, 339, 579, 582, 666, 678
BlsI	GCNGC	6 cut(s)	310, 340, 580, 583, 667, 679
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	2 cut(s)	1121, 1248
Bme18I	GGWCC	2 cut(s)	237, 1117
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	237, 1117, 1190
BmiI	GGNNCC	2 cut(s)	200, 540
BmrFI	CCNGG	2 cut(s)	1121, 1248
BmrI	ACTGGG	3 cut(s)	235, 474, 803
BmsI	GCATC	2 cut(s)	993, 1178
BmuI	ACTGGG	3 cut(s)	235, 474, 803
BpiI	GAAGAC	1 cut(s)	287
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpuMI	CCSGG	1 cut(s)	1248
BsaJI	CCNNGG	1 cut(s)	1120
BsaWI	WCCGGW	3 cut(s)	171, 214, 977
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 274, 1126
Bse118I	RCCGGY	2 cut(s)	171, 254
Bse1I	ACTGG	4 cut(s)	230, 469, 809, 908
Bse21I	CCTNAGG	1 cut(s)	744
Bse3DI	GCAATG	3 cut(s)	419, 454, 1278
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	1121
BseDI	CCNNGG	1 cut(s)	1120
BseGI	GGATG	2 cut(s)	303, 1232
BseLI	CCNNNNNNNGG	3 cut(s)	178, 274, 1126
BseMI	GCAATG	3 cut(s)	419, 454, 1278
BseMII	CTCAG	2 cut(s)	106, 735
BseNI	ACTGG	4 cut(s)	230, 469, 809, 908
BseXI	GCAGC	6 cut(s)	295, 350, 565, 568, 652, 689
BseYI	CCCAGC	1 cut(s)	1024
Bsh1236I	CGCG	1 cut(s)	1220
BshFI	GGCC	5 cut(s)	148, 267, 749, 1192, 1214
BshNI	GGYRCC	2 cut(s)	198, 538
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	7 cut(s)	145, 172, 196, 215, 255, 978, 1247
BslFI	GGGAC	2 cut(s)	481, 529
BslI	CCNNNNNNNGG	3 cut(s)	178, 274, 1126
BsmFI	GGGAC	2 cut(s)	481, 529
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	5 cut(s)	148, 267, 749, 1192, 1214
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	494, 608, 1056
BspACI	CCGC	5 cut(s)	27, 371, 547, 828, 1218
BspANI	GGCC	5 cut(s)	148, 267, 749, 1192, 1214
BspCNI	CTCAG	2 cut(s)	105, 736
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	1220
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	200, 540
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	3 cut(s)	912, 997, 1193
BspPI	GGATC	2 cut(s)	502, 616
BspT107I	GGYRCC	2 cut(s)	198, 538
BsrBI	CCGCTC	1 cut(s)	830
BsrDI	GCAATG	3 cut(s)	419, 454, 1278
BsrFI	RCCGGY	2 cut(s)	171, 254
BsrI	ACTGG	4 cut(s)	230, 469, 809, 908
BssAI	RCCGGY	2 cut(s)	171, 254
BssECI	CCNNGG	1 cut(s)	1120
BssMI	GATC	3 cut(s)	494, 608, 1056
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	2 cut(s)	1102, 1315
Bst6I	CTCTTC	2 cut(s)	251, 948
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstC8I	GCNNGC	2 cut(s)	336, 1261
BstDEI	CTNAG	2 cut(s)	92, 744
BstF5I	GGATG	2 cut(s)	303, 1232
BstFNI	CGCG	1 cut(s)	1220
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	3 cut(s)	260, 447, 698
BstKTI	GATC	3 cut(s)	497, 611, 1059
BstMBI	GATC	3 cut(s)	494, 608, 1056
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 264, 674, 968, 1175
BstNI	CCWGG	1 cut(s)	1121
BstSCI	CCNGG	2 cut(s)	1119, 1246
BstSFI	CTRYAG	1 cut(s)	666
BstUI	CGCG	1 cut(s)	1220
BstV1I	GCAGC	6 cut(s)	295, 350, 565, 568, 652, 689
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
Bsu36I	CCTNAGG	1 cut(s)	744
BsuRI	GGCC	5 cut(s)	148, 267, 749, 1192, 1214
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	303, 1232
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	223, 462, 1059
BveI	ACCTGC	3 cut(s)	912, 997, 1193
Cac8I	GCNNGC	2 cut(s)	336, 1261
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	3 cut(s)	260, 447, 698
Cfr10I	RCCGGY	2 cut(s)	171, 254
Cfr13I	GGNCC	3 cut(s)	237, 1117, 1190
Csp6I	GTAC	1 cut(s)	812
CspAI	ACCGGT	1 cut(s)	171
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	1 cut(s)	812
DdeI	CTNAG	2 cut(s)	92, 744
DpnI	GATC	3 cut(s)	496, 610, 1058
DpnII	GATC	3 cut(s)	494, 608, 1056
DraI	TTTAAA	1 cut(s)	1152
EaeI	YGGCCR	1 cut(s)	1212
Eam1104I	CTCTTC	2 cut(s)	251, 948
EarI	CTCTTC	2 cut(s)	251, 948
Eco147I	AGGCCT	1 cut(s)	749
Eco47I	GGWCC	2 cut(s)	237, 1117
Eco81I	CCTNAGG	1 cut(s)	744
EcoRI	GAATTC	2 cut(s)	888, 1251
EcoRII	CCWGG	1 cut(s)	1119
FaeI	CATG	1 cut(s)	368
FaqI	GGGAC	2 cut(s)	481, 529
FatI	CATG	1 cut(s)	364
FauI	CCCGC	2 cut(s)	34, 364
FauNDI	CATATG	1 cut(s)	1043
FbaI	TGATCA	1 cut(s)	1056
Fnu4HI	GCNGC	6 cut(s)	309, 339, 579, 582, 666, 678
FokI	GGATG	2 cut(s)	310, 1239
Fsp4HI	GCNGC	6 cut(s)	309, 339, 579, 582, 666, 678
FspBI	CTAG	7 cut(s)	342, 479, 815, 995, 1032, 1068, 1109
FspI	TGCGCA	1 cut(s)	446
GlaI	GCGC	3 cut(s)	259, 446, 697
GluI	GCNGC	6 cut(s)	309, 339, 579, 582, 666, 678
GsaI	CCCAGC	1 cut(s)	1028
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	148, 267, 749, 1192, 1214
HapII	CCGG	7 cut(s)	145, 172, 196, 215, 255, 978, 1247
HhaI	GCGC	3 cut(s)	260, 447, 698
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	3 cut(s)	258, 445, 696
HinP1I	GCGC	3 cut(s)	258, 445, 696
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	1154
HinfI	GANTC	3 cut(s)	517, 785, 1308
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	7 cut(s)	145, 172, 196, 215, 255, 978, 1247
HphI	GGTGA	2 cut(s)	313, 992
Hpy166II	GTNNAC	2 cut(s)	68, 616
Hpy188I	TCNGA	5 cut(s)	95, 277, 534, 588, 634
Hpy188III	TCNNGA	5 cut(s)	215, 365, 560, 743, 1000
Hpy8I	GTNNAC	2 cut(s)	68, 616
HpyAV	CCTTC	3 cut(s)	32, 151, 984
HpyCH4III	ACNGT	2 cut(s)	1102, 1315
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	8 cut(s)	338, 668, 824, 855, 971, 1006, 1259, 1283
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 264, 674, 968, 1175
HpyF3I	CTNAG	2 cut(s)	92, 744
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	3 cut(s)	258, 445, 696
Kpn2I	TCCGGA	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	1056
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	494, 608, 1056
LmnI	GCTCC	3 cut(s)	198, 1038, 1069
Lsp1109I	GCAGC	6 cut(s)	295, 350, 565, 568, 652, 689
LweI	GCATC	2 cut(s)	993, 1178
MaeI	CTAG	7 cut(s)	342, 479, 815, 995, 1032, 1068, 1109
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	6 cut(s)	10, 181, 186, 549, 596, 1096
MalI	GATC	3 cut(s)	496, 610, 1058
MbiI	CCGCTC	1 cut(s)	830
MboI	GATC	3 cut(s)	494, 608, 1056
MboII	GAAGA	6 cut(s)	238, 292, 392, 583, 935, 938
MflI	RGATCY	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	1214
MluCI	AATT	6 cut(s)	357, 565, 792, 888, 930, 1251
MluNI	TGGCCA	1 cut(s)	1214
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	3 cut(s)	255, 372, 974
Mox20I	TGGCCA	1 cut(s)	1214
MroI	TCCGGA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	1214
MseI	TTAA	5 cut(s)	176, 356, 615, 1151, 1320
Msp20I	TGGCCA	1 cut(s)	1214
MspI	CCGG	7 cut(s)	145, 172, 196, 215, 255, 978, 1247
MspR9I	CCNGG	2 cut(s)	1121, 1248
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	1 cut(s)	1121
MvnI	CGCG	1 cut(s)	1220
MwoI	GCNNNNNNNGC	5 cut(s)	257, 264, 674, 968, 1175
NciI	CCSGG	1 cut(s)	1248
NdeI	CATATG	1 cut(s)	1043
NdeII	GATC	3 cut(s)	494, 608, 1056
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	200, 540
NmuCI	GTSAC	4 cut(s)	10, 181, 186, 549
NsbI	TGCGCA	1 cut(s)	446
PagI	TCATGA	1 cut(s)	364
PaqCI	CACCTGC	2 cut(s)	997, 1193
PceI	AGGCCT	1 cut(s)	749
PctI	GAATGC	1 cut(s)	1231
PfeI	GAWTC	2 cut(s)	785, 1308
PflFI	GACNNNGTC	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	1246
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	6 cut(s)	310, 340, 580, 583, 667, 679
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	1119
PspFI	CCCAGC	1 cut(s)	1024
PspGI	CCWGG	1 cut(s)	1119
PspN4I	GGNNCC	2 cut(s)	200, 540
PspPI	GGNCC	3 cut(s)	237, 1117, 1190
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	686
RsaI	GTAC	1 cut(s)	813
RsaNI	GTAC	1 cut(s)	812
SaqAI	TTAA	5 cut(s)	176, 356, 615, 1151, 1320
SatI	GCNGC	6 cut(s)	309, 339, 579, 582, 666, 678
Sau3AI	GATC	3 cut(s)	494, 608, 1056
Sau96I	GGNCC	3 cut(s)	237, 1117, 1190
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	1121, 1248
SfaNI	GCATC	2 cut(s)	993, 1178
SfcI	CTRYAG	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	237, 1117
Sse9I	AATT	6 cut(s)	357, 565, 792, 888, 930, 1251
SseBI	AGGCCT	1 cut(s)	749
SsiI	CCGC	5 cut(s)	27, 371, 547, 828, 1218
SspI	AATATT	1 cut(s)	1183
SspMI	CTAG	7 cut(s)	342, 479, 815, 995, 1032, 1068, 1109
StuI	AGGCCT	1 cut(s)	749
StyD4I	CCNGG	2 cut(s)	1119, 1246
TaaI	ACNGT	2 cut(s)	1102, 1315
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	357, 565, 792, 888, 930, 1251
TatI	WGTACW	1 cut(s)	811
TfiI	GAWTC	2 cut(s)	785, 1308
Tru1I	TTAA	5 cut(s)	176, 356, 615, 1151, 1320
Tru9I	TTAA	5 cut(s)	176, 356, 615, 1151, 1320
TscAI	CASTG	3 cut(s)	230, 469, 1066
TseFI	GTSAC	4 cut(s)	10, 181, 186, 549
TseI	GCWGC	6 cut(s)	308, 338, 578, 581, 665, 677
Tsp45I	GTSAC	4 cut(s)	10, 181, 186, 549
TspDTI	ATGAA	3 cut(s)	381, 697, 791
TspRI	CASTG	3 cut(s)	230, 469, 1066
Tth111I	GACNNNGTC	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	237, 1117
XapI	RAATTY	2 cut(s)	888, 1251
XspI	CTAG	7 cut(s)	342, 479, 815, 995, 1032, 1068, 1109
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.