Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 89 |
| Acc65I | GGTACC | 1 cut(s) | 76 |
| AccB1I | GGYRCC | 1 cut(s) | 76 |
| AccI | GTMKAC | 2 cut(s) | 50, 245 |
| AciI | CCGC | 2 cut(s) | 80, 100 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcuI | CTGAAG | 1 cut(s) | 333 |
| AfaI | GTAC | 2 cut(s) | 78, 370 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 122 |
| AflII | CTTAAG | 1 cut(s) | 301 |
| AluBI | AGCT | 2 cut(s) | 163, 322 |
| AluI | AGCT | 2 cut(s) | 163, 322 |
| Alw21I | GWGCWC | 1 cut(s) | 239 |
| AoxI | GGCC | 3 cut(s) | 54, 274, 297 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 112, 144 |
| Asp718I | GGTACC | 1 cut(s) | 76 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 1 cut(s) | 217 |
| BanI | GGYRCC | 1 cut(s) | 76 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 1 cut(s) | 239 |
| BccI | CCATC | 2 cut(s) | 181, 225 |
| BceAI | ACGGC | 2 cut(s) | 69, 75 |
| BfaI | CTAG | 1 cut(s) | 388 |
| BfrI | CTTAAG | 1 cut(s) | 301 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 296 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 2 cut(s) | 57, 340 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 122 |
| Bse1I | ACTGG | 1 cut(s) | 127 |
| Bse3DI | GCAATG | 1 cut(s) | 357 |
| BseDI | CCNNGG | 2 cut(s) | 57, 340 |
| BseGI | GGATG | 1 cut(s) | 236 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BseMI | GCAATG | 1 cut(s) | 357 |
| BseNI | ACTGG | 1 cut(s) | 127 |
| BsgI | GTGCAG | 1 cut(s) | 177 |
| BshFI | GGCC | 3 cut(s) | 56, 276, 299 |
| BshNI | GGYRCC | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 239 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BsmI | GAATGC | 1 cut(s) | 154 |
| BsnI | GGCC | 3 cut(s) | 56, 276, 299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 239 |
| BspACI | CCGC | 2 cut(s) | 80, 100 |
| BspANI | GGCC | 3 cut(s) | 56, 276, 299 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BspT107I | GGYRCC | 1 cut(s) | 76 |
| BspTI | CTTAAG | 1 cut(s) | 301 |
| BsrDI | GCAATG | 1 cut(s) | 357 |
| BsrI | ACTGG | 1 cut(s) | 127 |
| BssECI | CCNNGG | 2 cut(s) | 57, 340 |
| BssNAI | GTATAC | 1 cut(s) | 51 |
| BssT1I | CCWWGG | 1 cut(s) | 340 |
| Bst1107I | GTATAC | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 1 cut(s) | 366 |
| Bst6I | CTCTTC | 1 cut(s) | 309 |
| BstAFI | CTTAAG | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 1 cut(s) | 274 |
| BstDSI | CCRYGG | 1 cut(s) | 57 |
| BstF5I | GGATG | 1 cut(s) | 236 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstZ17I | GTATAC | 1 cut(s) | 51 |
| BsuRI | GGCC | 3 cut(s) | 56, 276, 299 |
| BtgI | CCRYGG | 1 cut(s) | 57 |
| BtsCI | GGATG | 1 cut(s) | 236 |
| BtsIMutI | CAGTG | 1 cut(s) | 362 |
| Cac8I | GCNNGC | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Csp6I | GTAC | 2 cut(s) | 77, 369 |
| CviJI | RGCY | 9 cut(s) | 7, 18, 56, 163, 254, 276, 290, 299, 322 |
| CviKI_1 | RGCY | 9 cut(s) | 7, 18, 56, 163, 254, 276, 290, 299, 322 |
| CviQI | GTAC | 2 cut(s) | 77, 369 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 1 cut(s) | 309 |
| EarI | CTCTTC | 1 cut(s) | 309 |
| Eco130I | CCWWGG | 1 cut(s) | 340 |
| Eco147I | AGGCCT | 1 cut(s) | 276 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco57I | CTGAAG | 1 cut(s) | 333 |
| EcoT14I | CCWWGG | 1 cut(s) | 340 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| ErhI | CCWWGG | 1 cut(s) | 340 |
| FaiI | YATR | 8 cut(s) | 30, 51, 89, 135, 146, 195, 264, 266 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 261, 293, 284, 316 |
| FblI | GTMKAC | 2 cut(s) | 50, 245 |
| FokI | GGATG | 1 cut(s) | 243 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| FspBI | CTAG | 1 cut(s) | 388 |
| GlaI | GCGC | 1 cut(s) | 63 |
| HaeIII | GGCC | 3 cut(s) | 56, 276, 299 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HphI | GGTGA | 1 cut(s) | 217 |
| Hpy166II | GTNNAC | 3 cut(s) | 51, 246, 369 |
| Hpy188I | TCNGA | 1 cut(s) | 120 |
| Hpy8I | GTNNAC | 3 cut(s) | 51, 246, 369 |
| Hpy99I | CGWCG | 1 cut(s) | 376 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4III | ACNGT | 1 cut(s) | 366 |
| HpyCH4IV | ACGT | 2 cut(s) | 239, 371 |
| HpyCH4V | TGCA | 2 cut(s) | 158, 362 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| HpySE526I | ACGT | 2 cut(s) | 239, 371 |
| HspAI | GCGC | 1 cut(s) | 62 |
| KpnI | GGTACC | 1 cut(s) | 80 |
| LmnI | GCTCC | 1 cut(s) | 234 |
| LpnPI | CCDG | 5 cut(s) | 108, 153, 209, 240, 258 |
| MaeI | CTAG | 1 cut(s) | 388 |
| MaeII | ACGT | 2 cut(s) | 239, 371 |
| MaeIII | GTNAC | 2 cut(s) | 104, 383 |
| MboII | GAAGA | 2 cut(s) | 326, 343 |
| MhlI | GDGCHC | 2 cut(s) | 20, 239 |
| MmeI | TCCRAC | 1 cut(s) | 208 |
| MnlI | CCTC | 3 cut(s) | 30, 126, 365 |
| MseI | TTAA | 1 cut(s) | 302 |
| MspCI | CTTAAG | 1 cut(s) | 301 |
| Mva1269I | GAATGC | 1 cut(s) | 154 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| PceI | AGGCCT | 1 cut(s) | 276 |
| PctI | GAATGC | 1 cut(s) | 154 |
| PsiI | TTATAA | 1 cut(s) | 89 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| RsaI | GTAC | 2 cut(s) | 78, 370 |
| RsaNI | GTAC | 2 cut(s) | 77, 369 |
| SaqAI | TTAA | 1 cut(s) | 302 |
| SduI | GDGCHC | 2 cut(s) | 20, 239 |
| SetI | ASST | 7 cut(s) | 78, 118, 165, 228, 242, 324, 374 |
| SmlI | CTYRAG | 1 cut(s) | 301 |
| SmoI | CTYRAG | 1 cut(s) | 301 |
| SseBI | AGGCCT | 1 cut(s) | 276 |
| SsiI | CCGC | 2 cut(s) | 80, 100 |
| SspMI | CTAG | 1 cut(s) | 388 |
| StuI | AGGCCT | 1 cut(s) | 276 |
| StyI | CCWWGG | 1 cut(s) | 340 |
| TaaI | ACNGT | 1 cut(s) | 366 |
| TaiI | ACGT | 2 cut(s) | 242, 374 |
| Tru1I | TTAA | 1 cut(s) | 302 |
| Tru9I | TTAA | 1 cut(s) | 302 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TspDTI | ATGAA | 3 cut(s) | 56, 161, 281 |
| TspRI | CASTG | 1 cut(s) | 369 |
| Vha464I | CTTAAG | 1 cut(s) | 301 |
| XmiI | GTMKAC | 2 cut(s) | 50, 245 |
| XspI | CTAG | 1 cut(s) | 388 |