Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 161 |
| AccIII | TCCGGA | 1 cut(s) | 16 |
| AciI | CCGC | 5 cut(s) | 37, 56, 59, 105, 184 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 132 |
| AflIII | ACRYGT | 1 cut(s) | 6 |
| AgsI | TTSAA | 1 cut(s) | 47 |
| AjiI | CACGTC | 1 cut(s) | 7 |
| AluBI | AGCT | 2 cut(s) | 158, 252 |
| AluI | AGCT | 2 cut(s) | 158, 252 |
| Alw26I | GTCTC | 1 cut(s) | 217 |
| Ama87I | CYCGRG | 1 cut(s) | 159 |
| Aor13HI | TCCGGA | 1 cut(s) | 16 |
| ApeKI | GCWGC | 3 cut(s) | 111, 122, 252 |
| AseI | ATTAAT | 1 cut(s) | 237 |
| AvaI | CYCGRG | 1 cut(s) | 159 |
| BbvI | GCAGC | 3 cut(s) | 109, 123, 239 |
| BceAI | ACGGC | 1 cut(s) | 110 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 104, 138 |
| BclI | TGATCA | 1 cut(s) | 199 |
| BcoDI | GTCTC | 1 cut(s) | 217 |
| BfuAI | ACCTGC | 1 cut(s) | 161 |
| BisI | GCNGC | 6 cut(s) | 57, 60, 112, 123, 185, 253 |
| BlsI | GCNGC | 6 cut(s) | 58, 61, 113, 124, 186, 254 |
| BmeT110I | CYCGRG | 1 cut(s) | 159 |
| BmgBI | CACGTC | 1 cut(s) | 7 |
| BmiI | GGNNCC | 1 cut(s) | 223 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 142, 174 |
| BpmI | CTGGAG | 1 cut(s) | 209 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 132 |
| Bse118I | RCCGGY | 2 cut(s) | 101, 224 |
| Bse3DI | GCAATG | 1 cut(s) | 179 |
| BseAI | TCCGGA | 1 cut(s) | 16 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 132 |
| BseMI | GCAATG | 1 cut(s) | 179 |
| BseXI | GCAGC | 3 cut(s) | 109, 123, 239 |
| BseYI | CCCAGC | 1 cut(s) | 68 |
| BsgI | GTGCAG | 1 cut(s) | 189 |
| Bsh1285I | CGRYCG | 1 cut(s) | 102 |
| BsiEI | CGRYCG | 1 cut(s) | 102 |
| BsiHKCI | CYCGRG | 1 cut(s) | 159 |
| BsiSI | CCGG | 3 cut(s) | 17, 102, 225 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 132 |
| BsmAI | GTCTC | 1 cut(s) | 217 |
| BsoBI | CYCGRG | 1 cut(s) | 159 |
| Bsp13I | TCCGGA | 1 cut(s) | 16 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspACI | CCGC | 5 cut(s) | 37, 56, 59, 105, 184 |
| BspEI | TCCGGA | 1 cut(s) | 16 |
| BspLI | GGNNCC | 1 cut(s) | 223 |
| BspMI | ACCTGC | 1 cut(s) | 161 |
| BsrDI | GCAATG | 1 cut(s) | 179 |
| BsrFI | RCCGGY | 2 cut(s) | 101, 224 |
| BssAI | RCCGGY | 2 cut(s) | 101, 224 |
| BssMI | GATC | 1 cut(s) | 199 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstDEI | CTNAG | 1 cut(s) | 259 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMCI | CGRYCG | 1 cut(s) | 102 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 111, 176 |
| BstV1I | GCAGC | 3 cut(s) | 109, 123, 239 |
| BtrI | CACGTC | 1 cut(s) | 7 |
| BveI | ACCTGC | 1 cut(s) | 161 |
| Cfr10I | RCCGGY | 2 cut(s) | 101, 224 |
| CviJI | RGCY | 6 cut(s) | 62, 158, 187, 224, 252, 263 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 158, 187, 224, 252, 263 |
| DdeI | CTNAG | 1 cut(s) | 259 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| EciI | GGCGGA | 1 cut(s) | 52 |
| Eco88I | CYCGRG | 1 cut(s) | 159 |
| FaiI | YATR | 1 cut(s) | 27 |
| FbaI | TGATCA | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 60, 112, 123, 185, 253 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 60, 112, 123, 185, 253 |
| GluI | GCNGC | 6 cut(s) | 57, 60, 112, 123, 185, 253 |
| GsaI | CCCAGC | 1 cut(s) | 72 |
| GsuI | CTGGAG | 1 cut(s) | 209 |
| HapII | CCGG | 3 cut(s) | 17, 102, 225 |
| HinfI | GANTC | 1 cut(s) | 116 |
| HpaII | CCGG | 3 cut(s) | 17, 102, 225 |
| Hpy188I | TCNGA | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| HpyAV | CCTTC | 1 cut(s) | 126 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 1 cut(s) | 170 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 111, 176 |
| HpyF3I | CTNAG | 1 cut(s) | 259 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Kpn2I | TCCGGA | 1 cut(s) | 16 |
| Ksp22I | TGATCA | 1 cut(s) | 199 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LmnI | GCTCC | 1 cut(s) | 221 |
| LpnPI | CCDG | 6 cut(s) | 30, 54, 115, 156, 173, 238 |
| Lsp1109I | GCAGC | 3 cut(s) | 109, 123, 239 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MlyI | GAGTC | 1 cut(s) | 125 |
| MnlI | CCTC | 4 cut(s) | 27, 33, 133, 158 |
| MroI | TCCGGA | 1 cut(s) | 16 |
| MseI | TTAA | 2 cut(s) | 144, 237 |
| MspI | CCGG | 3 cut(s) | 17, 102, 225 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 111, 176 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIV | GGNNCC | 1 cut(s) | 223 |
| PkrI | GCNGC | 6 cut(s) | 58, 61, 113, 124, 186, 254 |
| PleI | GAGTC | 1 cut(s) | 124 |
| PpsI | GAGTC | 1 cut(s) | 124 |
| PshBI | ATTAAT | 1 cut(s) | 237 |
| PspFI | CCCAGC | 1 cut(s) | 68 |
| PspN4I | GGNNCC | 1 cut(s) | 223 |
| SaqAI | TTAA | 2 cut(s) | 144, 237 |
| SatI | GCNGC | 6 cut(s) | 57, 60, 112, 123, 185, 253 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| SchI | GAGTC | 1 cut(s) | 125 |
| SetI | ASST | 6 cut(s) | 9, 144, 160, 169, 175, 254 |
| SsiI | CCGC | 5 cut(s) | 37, 56, 59, 105, 184 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 2 cut(s) | 92, 98 |
| TauI | GCSGC | 3 cut(s) | 59, 62, 187 |
| Tru1I | TTAA | 2 cut(s) | 144, 237 |
| Tru9I | TTAA | 2 cut(s) | 144, 237 |
| TseI | GCWGC | 3 cut(s) | 111, 122, 252 |
| VspI | ATTAAT | 1 cut(s) | 237 |