Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Reverse (-)

53448099 .. 53449556

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTTCCTCTATGATGTCCTCAGCAACCGTTGCCTCAGTTAACCGTGCCCCGGTTCAGGCTAGCATGGTTGCACCCTTCAACGGGCTCAAGTCGGCCTCCGCCTTCCCTGTGACCCGCAAGGCCAACGATATTACCTCTGTTGCCAGCAATGGTGGAAGAGTCCAGTGCATGCAGGTGTGGCCAACAGTTGGATTGAAGAAGTTTGAGACCCTCTCTTACCTTCCTCCTCTAACTGTCGAGTCATTGGCCAAGGAAGTAGAGTACCTTCTCCGCAACAAATGGGTTCCCTGCTTGGAATTTGAGTTGGAGCACGGTTTCGTCTACCGTGAGAACAACAAGTCCCCCGGGTACTATGACGGACGTTACTGGACAATGTGGAAGCTCCCCATGTTCGGATGCACCGACGCTTCCCAGGTTATTGCTGAGCTCGAAGAGGCCAAGAAGACTTACCCCGAAGCCTTCATCAGGATCATCGGATTTGACAACGTTCGCCAAGTACAGTGTGTTAGTTTCATTGCCTACAAGCCAGCAAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

180

Amino Acids

20.19

Weight (kDa)

8.63

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 43	1.5e-21	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	69 - 177	1.4e-36	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	3 cut(s)	102, 118, 274
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	2 cut(s)	182, 249
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	3 cut(s)	266, 353, 501
AfiI	CCNNNNNNNGG	7 cut(s)	52, 58, 83, 84, 191, 395, 468
AgsI	TTSAA	2 cut(s)	82, 199
AjnI	CCWGG	1 cut(s)	414
AloI	GAACNNNNNNTCC	2 cut(s)	326, 358
AluBI	AGCT	3 cut(s)	385, 430, 537
AluI	AGCT	3 cut(s)	385, 430, 537
Alw21I	GWGCWC	2 cut(s)	315, 432
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	5 cut(s)	96, 123, 182, 249, 438
ApoI	RAATTY	1 cut(s)	299
AsuC2I	CCSGG	3 cut(s)	53, 348, 349
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	52
BalI	TGGCCA	2 cut(s)	184, 251
BanII	GRGCYC	2 cut(s)	90, 432
BarI	GAAGNNNNNNTAC	2 cut(s)	252, 284
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	315, 432
BbvCI	CCTCAGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	3 cut(s)	53, 348, 349
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	166
BlpI	GCTNAGC	1 cut(s)	426
Bme1390I	CCNGG	4 cut(s)	53, 348, 349, 416
BmeT110I	CYCGRG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	4 cut(s)	53, 348, 349, 416
BmsI	GCATC	1 cut(s)	389
BmtI	GCTAGC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	22
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	3 cut(s)	53, 348, 349
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	5 cut(s)	51, 252, 346, 347, 414
Bsc4I	CCNNNNNNNGG	7 cut(s)	52, 58, 83, 84, 191, 395, 468
Bse1I	ACTGG	2 cut(s)	166, 374
Bse3DI	GCAATG	2 cut(s)	157, 516
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	5 cut(s)	51, 252, 346, 347, 414
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	7 cut(s)	52, 58, 83, 84, 191, 395, 468
BseMI	GCAATG	2 cut(s)	157, 516
BseMII	CTCAG	3 cut(s)	36, 51, 417
BseNI	ACTGG	2 cut(s)	166, 374
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	52
BshFI	GGCC	5 cut(s)	98, 125, 184, 251, 440
BsiHKAI	GWGCWC	2 cut(s)	315, 432
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	53, 348
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	7 cut(s)	52, 58, 83, 84, 191, 395, 468
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	5 cut(s)	98, 125, 184, 251, 440
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	4 cut(s)	52, 90, 315, 432
Bsp143I	GATC	1 cut(s)	471
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	3 cut(s)	102, 118, 274
BspANI	GGCC	5 cut(s)	98, 125, 184, 251, 440
BspCNI	CTCAG	3 cut(s)	35, 50, 418
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	157, 516
BsrI	ACTGG	2 cut(s)	166, 374
BssECI	CCNNGG	5 cut(s)	51, 252, 346, 347, 414
BssMI	GATC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	7 cut(s)	31, 47, 190, 238, 317, 329, 504
Bst6I	CTCTTC	2 cut(s)	154, 429
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	5 cut(s)	64, 148, 173, 531, 535
BstDEI	CTNAG	3 cut(s)	22, 37, 426
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	474
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	471
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 181
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	4 cut(s)	51, 346, 347, 414
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	5 cut(s)	98, 125, 184, 251, 440
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	173, 509
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	5 cut(s)	64, 148, 173, 531, 535
Cfr9I	CCCGGG	1 cut(s)	347
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	3 cut(s)	265, 352, 500
CviAII	CATG	3 cut(s)	67, 172, 391
CviQI	GTAC	3 cut(s)	265, 352, 500
DdeI	CTNAG	3 cut(s)	22, 37, 426
DpnI	GATC	1 cut(s)	473
DpnII	GATC	1 cut(s)	471
EaeI	YGGCCR	2 cut(s)	182, 249
Eam1104I	CTCTTC	2 cut(s)	154, 429
EarI	CTCTTC	2 cut(s)	154, 429
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	90, 432
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	90, 432
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	3 cut(s)	70, 175, 394
FaiI	YATR	5 cut(s)	14, 68, 173, 357, 392
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	3 cut(s)	66, 171, 390
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	2 cut(s)	90, 432
FspBI	CTAG	1 cut(s)	63
HaeIII	GGCC	5 cut(s)	98, 125, 184, 251, 440
HapII	CCGG	2 cut(s)	53, 348
HgaI	GACGC	1 cut(s)	416
Hin1II	CATG	3 cut(s)	70, 175, 394
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	162, 242
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	53, 348
Hpy166II	GTNNAC	2 cut(s)	43, 325
Hpy188I	TCNGA	2 cut(s)	398, 479
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	2 cut(s)	43, 325
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	5 cut(s)	88, 115, 233, 278, 472
HpyCH4III	ACNGT	7 cut(s)	31, 47, 190, 238, 317, 329, 504
HpyCH4IV	ACGT	2 cut(s)	364, 489
HpyCH4V	TGCA	4 cut(s)	74, 171, 175, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 181
HpyF3I	CTNAG	3 cut(s)	22, 37, 426
HpySE526I	ACGT	2 cut(s)	364, 489
Hsp92II	CATG	3 cut(s)	70, 175, 394
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	310, 390
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	364, 489
MaeIII	GTNAC	2 cut(s)	112, 365
MalI	GATC	1 cut(s)	473
MboI	GATC	1 cut(s)	471
MboII	GAAGA	4 cut(s)	171, 211, 446, 457
MhlI	GDGCHC	4 cut(s)	52, 90, 315, 432
MlsI	TGGCCA	2 cut(s)	184, 251
MluCI	AATT	1 cut(s)	299
MluNI	TGGCCA	2 cut(s)	184, 251
MlyI	GAGTC	2 cut(s)	171, 251
MmeI	TCCRAC	2 cut(s)	172, 288
MnlI	CCTC	9 cut(s)	19, 31, 46, 109, 148, 224, 237, 240, 430
Mox20I	TGGCCA	2 cut(s)	184, 251
MscI	TGGCCA	2 cut(s)	184, 251
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	2 cut(s)	184, 251
MspI	CCGG	2 cut(s)	53, 348
MspR9I	CCNGG	4 cut(s)	53, 348, 349, 416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	32, 181
NciI	CCSGG	3 cut(s)	53, 348, 349
NdeII	GATC	1 cut(s)	471
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	70, 175, 394
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	191
PleI	GAGTC	2 cut(s)	170, 250
PpsI	GAGTC	2 cut(s)	170, 250
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	288
RsaI	GTAC	3 cut(s)	266, 353, 501
RsaNI	GTAC	3 cut(s)	265, 352, 500
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	471
SchI	GAGTC	2 cut(s)	171, 251
ScrFI	CCNGG	4 cut(s)	53, 348, 349, 416
SduI	GDGCHC	4 cut(s)	52, 90, 315, 432
SfaNI	GCATC	1 cut(s)	389
SmaI	CCCGGG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	3 cut(s)	102, 118, 274
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	4 cut(s)	51, 346, 347, 414
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	7 cut(s)	31, 47, 190, 238, 317, 329, 504
TaiI	ACGT	2 cut(s)	367, 492
TaqI	TCGA	2 cut(s)	240, 432
TasI	AATT	1 cut(s)	299
TatI	WGTACW	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	173, 509
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	454, 505
TspGWI	ACGGA	1 cut(s)	375
TspMI	CCCGGG	1 cut(s)	347
TspRI	CASTG	2 cut(s)	173, 509
Van91I	CCANNNNNTGG	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	175
XmaI	CCCGGG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.