Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000231

Physical Location & Seq

Genomic Coordinates Forward (+)

7001425 .. 7001964

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAACATGTTTCGCTTTGTGGTTGAAGGAGATCACCAAGGAACAACTACACCAAGGATGTTCGAGTGGACGTTGGAGCACCACAAGCAGTGCGTGGATACTTTCATCCTCTTGGGTGGTGATAAAGAGAAAGTTGGAGTACATAATGCCTTAAAGGCGGAGCTGTTGAGCCTGGCGAGGTGTTGTTGTAGAAGCTTTTACCCTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAAGGTCTGAAGCATTATTTTCCAGTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTAAAAAGATGTCATCGTCATGGATGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAACTCGGTGGGCTTAGCAATGGCAAGACTACCCCAAAGTCCGTGCTGAAGTTGATAGATGAGGAAGACCGCCGCCAAGGCCTAACCGCAAAGATGATAGCGCACCACCTTGTAGGGTTGAATCATTTGCAGAAGGAAACTCAACGGCTAATTAATGGCTTTTGGAATGGCCGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

179

Amino Acids

20.48

Weight (kDa)

9.27

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000231)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c21g0500361 RchiOBHm_Chr0c31g0501281 RchiOBHm_Chr0c31g0501361 RchiOBHm_Chr1g0366571 RchiOBHm_Chr1g0368811 RchiOBHm_Chr1g0382111 RchiOBHm_Chr2g0121351 RchiOBHm_Chr2g0121651 RchiOBHm_Chr2g0121971 RchiOBHm_Chr2g0122291 RchiOBHm_Chr2g0122411 RchiOBHm_Chr2g0124731 RchiOBHm_Chr2g0124741 RchiOBHm_Chr2g0125141 RchiOBHm_Chr2g0125201 RchiOBHm_Chr2g0125231 RchiOBHm_Chr2g0125321 RchiOBHm_Chr2g0125571 RchiOBHm_Chr2g0125691 RchiOBHm_Chr2g0125971 RchiOBHm_Chr2g0126271 RchiOBHm_Chr2g0126441 RchiOBHm_Chr2g0127451 RchiOBHm_Chr2g0128391 RchiOBHm_Chr2g0128871 RchiOBHm_Chr2g0129451 RchiOBHm_Chr2g0129741 RchiOBHm_Chr2g0129961 RchiOBHm_Chr2g0131161 RchiOBHm_Chr2g0131871 RchiOBHm_Chr2g0132661 RchiOBHm_Chr2g0134171 RchiOBHm_Chr2g0136421 RchiOBHm_Chr2g0137241 RchiOBHm_Chr2g0138031 RchiOBHm_Chr2g0139031 RchiOBHm_Chr2g0139331 RchiOBHm_Chr2g0139341 RchiOBHm_Chr2g0139441 RchiOBHm_Chr2g0141451 RchiOBHm_Chr2g0146701 RchiOBHm_Chr2g0147781 RchiOBHm_Chr2g0148841 RchiOBHm_Chr2g0148961 RchiOBHm_Chr2g0150261 RchiOBHm_Chr2g0152651 RchiOBHm_Chr2g0155711 RchiOBHm_Chr2g0156101 RchiOBHm_Chr2g0156321 RchiOBHm_Chr2g0157801 RchiOBHm_Chr2g0158491 RchiOBHm_Chr2g0161671 RchiOBHm_Chr2g0164891 RchiOBHm_Chr2g0165241 RchiOBHm_Chr2g0165281 RchiOBHm_Chr2g0165811 RchiOBHm_Chr2g0166781 RchiOBHm_Chr2g0168521 RchiOBHm_Chr2g0170181 RchiOBHm_Chr2g0171501 RchiOBHm_Chr2g0171931 RchiOBHm_Chr2g0172151 RchiOBHm_Chr2g0175071 RchiOBHm_Chr2g0176251 RchiOBHm_Chr2g0176731 RchiOBHm_Chr3g0447841 RchiOBHm_Chr3g0453271 RchiOBHm_Chr3g0456381 RchiOBHm_Chr3g0458661 RchiOBHm_Chr3g0458791 RchiOBHm_Chr3g0461201 RchiOBHm_Chr3g0462241 RchiOBHm_Chr3g0464391 RchiOBHm_Chr3g0465591 RchiOBHm_Chr3g0469851 RchiOBHm_Chr3g0470331 RchiOBHm_Chr4g0402011 RchiOBHm_Chr4g0403391 RchiOBHm_Chr4g0436281 RchiOBHm_Chr6g0247471 RchiOBHm_Chr6g0273091 RchiOBHm_Chr7g0180431 RchiOBHm_Chr7g0182691 RchiOBHm_Chr7g0190741 RchiOBHm_Chr7g0193021 RchiOBHm_Chr7g0193851 RchiOBHm_Chr7g0194191 RchiOBHm_Chr7g0195951 RchiOBHm_Chr7g0196551 RchiOBHm_Chr7g0196831 RchiOBHm_Chr7g0198051 RchiOBHm_Chr7g0198071 RchiOBHm_Chr7g0198081 RchiOBHm_Chr7g0199681
rosa_multiflora	Rmu_sc0004153.1_g000005 Rmu_sc0005666.1_g000001
rosa_rugosa	Rorug01G0001400 Rorug01G0001400 Rorug01G0077900 Rorug01G0082600 Rorug01G0082600 Rorug01G0096200 Rorug01G0096300 Rorug01G0261400 Rorug01G0448400 Rorug02G0114600 Rorug02G0185400 Rorug02G0201900 Rorug02G0253700 Rorug02G0257600 Rorug02G0282800 Rorug02G0298500 Rorug03G0113800 Rorug03G0158300 Rorug03G0215200 Rorug03G0216900 Rorug03G0265300 Rorug03G0288500 Rorug03G0359900.1 Rorug04G0065400 Rorug04G0066200 Rorug04G0069300 Rorug04G0253100 Rorug04G0361900 Rorug04G0419800 Rorug05G0041900 Rorug05G0147900 Rorug05G0257500 Rorug05G0259100 Rorug05G0304100 Rorug05G0340600 Rorug05G0460500 Rorug05G0583400 Rorug06G0050700 Rorug06G0056300 Rorug06G0065300 Rorug06G0083000 Rorug06G0171200 Rorug06G0451100 Rorug07G0168200 Rorug07G0169100 Rorug07G0197000 Rorug07G0302300 RorugPtG0001500.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AciI	CCGC	6 cut(s)	158, 340, 353, 430, 433, 447
AcoI	YGGCCR	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	267, 428
AfaI	GTAC	2 cut(s)	141, 231
AfiI	CCNNNNNNNGG	2 cut(s)	225, 292
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	3 cut(s)	26, 281, 481
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	163, 195
AluI	AGCT	2 cut(s)	163, 195
Alw21I	GWGCWC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	439, 529
AseI	ATTAAT	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	463
AsuHPI	GGTGA	5 cut(s)	26, 131, 265, 326, 367
BanI	GGYRCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	91
BfmI	CTRYAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	91
BglI	GCCNNNNNGGC	2 cut(s)	155, 438
BisI	GCNGC	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	312, 340
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	37, 53, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 292
Bse118I	RCCGGY	2 cut(s)	336, 531
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	37, 53, 436
BseGI	GGATG	3 cut(s)	63, 105, 327
BseLI	CCNNNNNNNGG	2 cut(s)	225, 292
BseMI	GCAATG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	441, 531
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	337, 532
BslI	CCNNNNNNNGG	2 cut(s)	225, 292
BsnI	GGCC	2 cut(s)	441, 531
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	6 cut(s)	158, 340, 353, 430, 433, 447
BspANI	GGCC	2 cut(s)	441, 531
BspLI	GGNNCC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	336, 531
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	2 cut(s)	336, 531
BssECI	CCNNGG	3 cut(s)	37, 53, 436
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	3 cut(s)	37, 53, 436
Bst2UI	CCWGG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	63, 105, 327
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 155, 337, 438
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	441, 531
BtsCI	GGATG	3 cut(s)	63, 105, 327
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	2 cut(s)	336, 531
Csp6I	GTAC	2 cut(s)	140, 230
CviAII	CATG	2 cut(s)	7, 318
CviJI	RGCY	9 cut(s)	163, 171, 195, 285, 373, 441, 508, 519, 531
CviKI_1	RGCY	9 cut(s)	163, 171, 195, 285, 373, 441, 508, 519, 531
CviQI	GTAC	2 cut(s)	140, 230
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	3 cut(s)	37, 53, 436
Eco147I	AGGCCT	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	267, 428
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	3 cut(s)	37, 53, 436
ErhI	CCWWGG	3 cut(s)	37, 53, 436
FaeI	CATG	2 cut(s)	10, 321
FaiI	YATR	4 cut(s)	8, 144, 289, 319
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	6, 317
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	3 cut(s)	70, 92, 334
Fsp4HI	GCNGC	1 cut(s)	433
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	2 cut(s)	441, 531
HapII	CCGG	2 cut(s)	337, 532
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	10, 321
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	1 cut(s)	481
HpaII	CCGG	2 cut(s)	337, 532
HphI	GGTGA	5 cut(s)	26, 131, 265, 326, 367
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	20, 487
HpyCH4IV	ACGT	2 cut(s)	71, 291
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 155, 337, 438
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	2 cut(s)	71, 291
Hsp92II	CATG	2 cut(s)	10, 321
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	3 cut(s)	76, 160, 328
LpnPI	CCDG	6 cut(s)	158, 185, 216, 274, 311, 350
LweI	GCATC	2 cut(s)	312, 340
MaeII	ACGT	2 cut(s)	71, 291
MaeIII	GTNAC	2 cut(s)	263, 271
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	510
MmeI	TCCRAC	2 cut(s)	54, 115
MnlI	CCTC	4 cut(s)	119, 171, 343, 415
MseI	TTAA	2 cut(s)	152, 513
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	2 cut(s)	337, 532
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	85, 155, 337, 438
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	10, 321
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	441
PciI	ACATGT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	292
PscI	ACATGT	1 cut(s)	6
PshBI	ATTAAT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	297
RsaI	GTAC	2 cut(s)	141, 231
RsaNI	GTAC	2 cut(s)	140, 230
RseI	CAYNNNNRTG	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	152, 513
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	74, 165, 182, 197, 245, 294, 301, 471
SfaNI	GCATC	2 cut(s)	312, 340
SfcI	CTRYAG	1 cut(s)	233
SgrAI	CRCCGGYG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	6 cut(s)	158, 340, 353, 430, 433, 447
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	3 cut(s)	37, 53, 436
TaiI	ACGT	2 cut(s)	74, 294
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	2 cut(s)	152, 513
Tru9I	TTAA	2 cut(s)	152, 513
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 94
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	513
XceI	RCATGY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.