Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005698

Physical Location & Seq

Genomic Coordinates Forward (+)

38062057 .. 38062758

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0344100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTAGAAAGTGCCTTAACACTGAGTGCTGAAAACTTGGCACGTCTAATGATGATAATATGGGCTATATGGAAAAACAGGAATAACATGCTATGGTCAGGAACACAACAAACTGCTCAAGATGTATTACTGAGCAGCTTCTCATGGCTCGAAGAGTTTCAGAAAGCTCGGGGTGGAATCAAACAACCGAAAGCGCATCCGCGACCTCGATGGAAACCTGCTGAAAATGGAGCGTTTAAATTGAATGTTGATGCGGCTTTCTTGTCATCAACAACCAAGGGAGGCATTGGCGGAATTTTACGGGATGCATCAGGAAGATTTGTAGCAGCATTTGCCAGTCCAGTGCCATATGCTGCATCTCCGAAACAATGTGAGCTTATGGCAATTAGAGCCGGCATTGATTTCCTTGTTTCCCTTCATATACAGCATGTGGTTGTAGAAAGCGACAGCACCATGGCCATAGCTGAGGCTCTGTGCACAGACCATACTCTCTTGGCCAATGGGGGTTTAATTGATGACATACAGAGGGCCATGCAGACAATTCCAAACGTTCAAATACGCCATCAACCACGCTCCAGCAATATGGTAGCACATAGGCTTGCTGGCATAGGCTTTGAAGCAATTAATAGTTGTATCTGGATAGGTCAAGCACCTACTTGTATTCGTGATGTTCTCCATCACGATTCTCAGTACCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000938 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006810 GO:0006914 GO:0007034 GO:0007041 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010051 GO:0010305 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0031410 GO:0031982 GO:0032456 GO:0032501 GO:0032502 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055037 GO:0061919 GO:0097708 GO:0099023 GO:1990745

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps51

Protein Analysis

233

Amino Acids

25.64

Weight (kDa)

8.41

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	82 - 201	8.3e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02030 AT4G02030
fragaria_vesca	FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210
malus_domestica	MD03G1295300.v1.1
prunus_persica	Prupe.5G007800_v2.0.a1 Prupe.5G007800_v2.0.a1
pyrus_communis	pycom01g04460
rosa_chinensis	RchiOBHm_Chr7g0241471
rosa_laevigata	RLG00000000578
rosa_multiflora	Rmu_sc0040921.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219100
rosa_rugosa	Rorug07G0344000 Rorug07G0344100 Rorug07G0344200
rosa_samantha	Rh7AG498800 Rh7BG469400 Rh7CG515700 Rh7DG483500
rosa_wichuraiana	Rw7G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccII	CGCG	1 cut(s)	202
AciI	CCGC	3 cut(s)	200, 254, 291
AclI	AACGTT	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	456, 495
AcsI	RAATTY	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	692
AgsI	TTSAA	3 cut(s)	244, 554, 617
AjiI	CACGTC	1 cut(s)	44
AluBI	AGCT	4 cut(s)	138, 167, 376, 464
AluI	AGCT	4 cut(s)	138, 167, 376, 464
Alw21I	GWGCWC	1 cut(s)	479
Alw44I	GTGCAC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	3 cut(s)	456, 495, 528
ApaLI	GTGCAC	1 cut(s)	475
ApeKI	GCWGC	3 cut(s)	135, 326, 353
ApoI	RAATTY	1 cut(s)	294
AseI	ATTAAT	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	528
AvaI	CYCGRG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	479
BalI	TGGCCA	2 cut(s)	458, 497
Bbv12I	GWGCWC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	147, 338, 340
BccI	CCATC	3 cut(s)	204, 570, 684
BfaI	CTAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	4 cut(s)	136, 255, 327, 354
BlsI	GCNGC	4 cut(s)	137, 256, 328, 355
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	528
BmsI	GCATC	5 cut(s)	205, 241, 295, 317, 365
BpmI	CTGGAG	1 cut(s)	559
Bpu10I	CCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	276, 453
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	336, 341
BseDI	CCNNGG	2 cut(s)	276, 453
BseGI	GGATG	2 cut(s)	196, 310
BseMII	CTCAG	4 cut(s)	14, 122, 456, 701
BseNI	ACTGG	2 cut(s)	336, 341
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	147, 338, 340
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	458, 497, 530
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	393
BsnI	GGCC	3 cut(s)	458, 497, 530
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	3 cut(s)	200, 254, 291
BspANI	GGCC	3 cut(s)	458, 497, 530
BspCNI	CTCAG	4 cut(s)	15, 123, 457, 700
BspFNI	CGCG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	336, 341
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	276, 453
BssT1I	CCWWGG	2 cut(s)	276, 453
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	394, 600, 604
BstDEI	CTNAG	4 cut(s)	23, 131, 465, 687
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	196, 310
BstFNI	CGCG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 389
BstNSI	RCATGY	2 cut(s)	91, 431
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	147, 338, 340
BstXI	CCANNNNNNTGG	1 cut(s)	583
BsuRI	GGCC	3 cut(s)	458, 497, 530
BtgI	CCRYGG	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	196, 310
BtsIMutI	CAGTG	2 cut(s)	20, 348
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	394, 600, 604
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	691
CviAII	CATG	5 cut(s)	88, 144, 428, 454, 532
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	4 cut(s)	23, 131, 465, 687
DraI	TTTAAA	1 cut(s)	238
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	2 cut(s)	456, 495
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	276, 453
Eco88I	CYCGRG	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	276, 453
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	2 cut(s)	276, 453
FaeI	CATG	5 cut(s)	91, 147, 431, 457, 535
FatI	CATG	5 cut(s)	87, 143, 427, 453, 531
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	136, 255, 327, 354
FokI	GGATG	2 cut(s)	183, 317
Fsp4HI	GCNGC	4 cut(s)	136, 255, 327, 354
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	4 cut(s)	136, 255, 327, 354
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	458, 497, 530
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	5 cut(s)	91, 147, 431, 457, 535
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	177, 683
HpaII	CCGG	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	2 cut(s)	162, 363
Hpy188III	TCNNGA	6 cut(s)	99, 119, 312, 637, 665, 680
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	1 cut(s)	425
HpyCH4IV	ACGT	2 cut(s)	43, 549
HpyCH4V	TGCA	4 cut(s)	308, 356, 477, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 389
HpyF3I	CTNAG	4 cut(s)	23, 131, 465, 687
HpySE526I	ACGT	2 cut(s)	43, 549
Hsp92II	CATG	5 cut(s)	91, 147, 431, 457, 535
HspAI	GCGC	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	392
KroNI	GCCGGC	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	230, 578
Lsp1109I	GCAGC	3 cut(s)	147, 338, 340
LweI	GCATC	5 cut(s)	205, 241, 295, 317, 365
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	2 cut(s)	43, 549
MboII	GAAGA	2 cut(s)	164, 327
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	2 cut(s)	458, 497
MluCI	AATT	6 cut(s)	239, 294, 384, 510, 540, 621
MluNI	TGGCCA	2 cut(s)	458, 497
MnlI	CCTC	4 cut(s)	216, 275, 460, 519
Mox20I	TGGCCA	2 cut(s)	458, 497
Mph1103I	ATGCAT	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	392
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	2 cut(s)	458, 497
MseI	TTAA	4 cut(s)	17, 237, 509, 624
Msp20I	TGGCCA	2 cut(s)	458, 497
MspI	CCGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	332, 389
NaeI	GCCGGC	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	349
NgoMIV	GCCGGC	1 cut(s)	392
NlaIII	CATG	5 cut(s)	91, 147, 431, 457, 535
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	2 cut(s)	91, 431
PdiI	GCCGGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	177, 683
PkrI	GCNGC	4 cut(s)	137, 256, 328, 355
PshBI	ATTAAT	1 cut(s)	624
Psp1406I	AACGTT	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	528
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
SaqAI	TTAA	4 cut(s)	17, 237, 509, 624
SatI	GCNGC	4 cut(s)	136, 255, 327, 354
Sau96I	GGNCC	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	5 cut(s)	205, 241, 295, 317, 365
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	6 cut(s)	239, 294, 384, 510, 540, 621
SsiI	CCGC	3 cut(s)	200, 254, 291
SspMI	CTAG	1 cut(s)	5
StyI	CCWWGG	2 cut(s)	276, 453
TaiI	ACGT	2 cut(s)	46, 552
TaqI	TCGA	2 cut(s)	150, 208
TasI	AATT	6 cut(s)	239, 294, 384, 510, 540, 621
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	177, 683
Tru1I	TTAA	4 cut(s)	17, 237, 509, 624
Tru9I	TTAA	4 cut(s)	17, 237, 509, 624
TscAI	CASTG	2 cut(s)	27, 348
TseI	GCWGC	3 cut(s)	135, 326, 353
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	27, 348
VneI	GTGCAC	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	624
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	2 cut(s)	91, 431
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.