Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005698

Physical Location & Seq

Genomic Coordinates Reverse (-)

38081768 .. 38082839

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0344200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAGACGACGATGTCAATGACATTGATATGGGGTTGTCTCTGAGTCATTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACTGGCATTCCCAAGTCCATGTTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACCGTCTACGCGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATCAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGTAATGATAACGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000938 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006810 GO:0006914 GO:0007034 GO:0007041 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010051 GO:0010305 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0031410 GO:0031982 GO:0032456 GO:0032501 GO:0032502 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055037 GO:0061919 GO:0097708 GO:0099023 GO:1990745

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps51

Protein Analysis

166

Amino Acids

17.9

Weight (kDa)

5.13

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02030 AT4G02030
fragaria_vesca	FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210 FvH4_5g39210
malus_domestica	MD03G1295300.v1.1
prunus_persica	Prupe.5G007800_v2.0.a1 Prupe.5G007800_v2.0.a1
pyrus_communis	pycom01g04460
rosa_chinensis	RchiOBHm_Chr7g0241471
rosa_laevigata	RLG00000000578
rosa_multiflora	Rmu_sc0040921.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219100
rosa_rugosa	Rorug07G0344000 Rorug07G0344100 Rorug07G0344200
rosa_samantha	Rh7AG498800 Rh7BG469400 Rh7CG515700 Rh7DG483500
rosa_wichuraiana	Rw7G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	1 cut(s)	244
AclWI	GGATC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	74, 116
AflIII	ACRYGT	1 cut(s)	242
AluBI	AGCT	3 cut(s)	185, 271, 339
AluI	AGCT	3 cut(s)	185, 271, 339
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	206, 494
AsuHPI	GGTGA	2 cut(s)	89, 266
BbvI	GCAGC	2 cut(s)	193, 481
BccI	CCATC	2 cut(s)	146, 458
BciVI	GTATCC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	439
BisI	GCNGC	2 cut(s)	207, 495
BlsI	GCNGC	2 cut(s)	208, 496
BmsI	GCATC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 116
Bse1I	ACTGG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	74, 116
BseMII	CTCAG	3 cut(s)	35, 258, 454
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	193, 481
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	74, 116
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	79, 222, 297, 418
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	36, 259, 453
BspFNI	CGCG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	4 cut(s)	79, 222, 297, 418
Bst4CI	ACNGT	2 cut(s)	237, 479
BstAPI	GCANNNNNTGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	44, 267, 440
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	4 cut(s)	82, 225, 300, 421
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	79, 222, 297, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 327, 336
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	193, 481
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	196
BtsI	GCAGTG	3 cut(s)	61, 164, 274
BtsIMutI	CAGTG	5 cut(s)	61, 114, 164, 274, 387
CaiI	CAGNNNCTG	1 cut(s)	185
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	109, 156, 185, 196, 206, 271, 339, 398
CviKI_1	RGCY	8 cut(s)	109, 156, 185, 196, 206, 271, 339, 398
DdeI	CTNAG	3 cut(s)	44, 267, 440
DpnI	GATC	4 cut(s)	81, 224, 299, 420
DpnII	GATC	4 cut(s)	79, 222, 297, 418
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
FaeI	CATG	1 cut(s)	136
FaiI	YATR	7 cut(s)	32, 54, 90, 134, 160, 162, 499
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	207, 495
Fsp4HI	GCNGC	2 cut(s)	207, 495
GluI	GCNGC	2 cut(s)	207, 495
HaeIII	GGCC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	136
HinfI	GANTC	4 cut(s)	46, 436, 459, 467
HphI	GGTGA	2 cut(s)	89, 266
Hpy166II	GTNNAC	2 cut(s)	233, 240
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	2 cut(s)	233, 240
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	237, 479
HpyCH4V	TGCA	5 cut(s)	164, 179, 288, 413, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 327, 336
HpyF3I	CTNAG	3 cut(s)	44, 267, 440
Hsp92II	CATG	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	79, 222, 297, 418
LpnPI	CCDG	6 cut(s)	102, 162, 279, 343, 427, 456
Lsp1109I	GCAGC	2 cut(s)	193, 481
LweI	GCATC	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	4 cut(s)	81, 224, 299, 420
MboI	GATC	4 cut(s)	79, 222, 297, 418
MluCI	AATT	1 cut(s)	361
MluI	ACGCGT	1 cut(s)	242
MlyI	GAGTC	3 cut(s)	55, 430, 476
MnlI	CCTC	3 cut(s)	186, 196, 382
MseI	TTAA	2 cut(s)	314, 333
MslI	CAYNNNNRTG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	120
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	285, 327, 336
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	4 cut(s)	79, 222, 297, 418
NlaIII	CATG	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	195
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	208, 496
PleI	GAGTC	3 cut(s)	54, 430, 475
PpsI	GAGTC	3 cut(s)	54, 430, 475
PstNI	CAGNNNCTG	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	314, 333
SatI	GCNGC	2 cut(s)	207, 495
Sau3AI	GATC	4 cut(s)	79, 222, 297, 418
SchI	GAGTC	3 cut(s)	55, 430, 476
SetI	ASST	6 cut(s)	187, 232, 268, 273, 341, 374
SfaNI	GCATC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	237, 479
TaqI	TCGA	2 cut(s)	225, 457
TasI	AATT	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	2 cut(s)	314, 333
Tru9I	TTAA	2 cut(s)	314, 333
TscAI	CASTG	5 cut(s)	68, 121, 171, 281, 387
TseI	GCWGC	2 cut(s)	206, 494
TspRI	CASTG	5 cut(s)	68, 121, 171, 281, 387
Tth111I	GACNNNGTC	1 cut(s)	14
Van91I	CCANNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.