Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

37971591 .. 37975252

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTCTTCATTCATGAAATGGAACCTTACAAATCAGAATACAAGATCAGAGTTCGTATATCGAGTGTGCAGAGCAAAGAAATATAATACTGACAAGAATGATGGTCTCCACTCTGTCTTGATTGATGAAAAGGGTGACGCTATTCATGCAATTAGCAGTGAATCTGACTACCCTTTAATTCACAAAAAAATACAACAAGGCAAGGTTTATGACATTCACAATTTCTTTACACGAAAAAACCAGGAAAACTTCAAGTTTGTTGATCATCAGAGTCAAGTCCGTTTCAATGCAATGACTGTCTTTGAAGCAGTTGAAGGAAACTGCCCAGAAATTTCAGAGCATCGATTCTATTTAGTAGAATTTGATAAACTCGAAGCACGCATGAATGATCATACAATTCTAACAGATGTGTATGGCTGTTTGAAGTCGATTGTACCACCACATGAGACAACTGTCAAGGATAAAGAGTCAAAATGTGAAATCCATTTGCAGAATTTAAGAAGAGAGAACTTGAGAATTACACTCTGGGGCAACACTGCTAGACAAGTCGACATGGAAACAATTAGAAAAGCTTCTCCACCAGTGCTGATGGCATTAACCAGTTTAAAAATCAAAGAGTACTTGAACAAACCTGCCCCATCAAATACAAGCAACACCTGTATTTTCATCAATCCAAAGATCCCAGAGACAAACAAGTACAGGCTTCAGTTCTCAAAACTGGTTGATAGAGTGCAAATACTTCCAACACCATTCAAACAGCCAACATCAGAAGAAATCCAGGAAACCAATATGAAAACAGTGACTGGATTGAACATATTGGATCCATTGTCATACAAGGAACAAATGGTGTATTGCAATGCTTCAATTTCCAGATTTGCAACACACGACGGTTGGTGGTATAAAGGATGTCCTCACTGTTATCGAGAATTAAAAGAACAAGAACATGACAATCAACTCGGCTGCTCACTTCATGGGAAGCAAGAAATTCTTCCTTGTTTCAGAATCTACATGACTATCACAGATGGACAAAATGAGGCAACGGTTATCATAATGGGAAAACCAGCAGAGCAACTGTTTGGAAGTAGTTGCAAAGATTTGGTCAGCAAAAGATCATACCCAACAGAATCAACACTACCAGAGGAGATAGAAAAAACAAGAGGCCAAAAGTTCCTTTTTCAGCTCAAGATAAAGGAAGATAGTGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000938 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0006810 GO:0006914 GO:0007034 GO:0007041 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010051 GO:0010305 GO:0012505 GO:0016192 GO:0016197 GO:0016482 GO:0031410 GO:0031982 GO:0032456 GO:0032501 GO:0032502 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055037 GO:0061919 GO:0097708 GO:0099023 GO:1990745

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps51

Protein Analysis

402

Amino Acids

46.66

Weight (kDa)

7.93

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF223	PF02721	26 - 101	6.2e-07	Domain of unknown function DUF223
REPA_OB_2	PF16900	127 - 211	1.5e-06	Replication protein A OB domain
Rep_fac-A_C	PF08646	285 - 400	2.6e-08	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	549
AclWI	GGATC	3 cut(s)	673, 815, 828
AcsI	RAATTY	4 cut(s)	330, 359, 493, 984
AcuI	CTGAAG	1 cut(s)	689
AfaI	GTAC	3 cut(s)	435, 620, 698
AgsI	TTSAA	9 cut(s)	253, 286, 305, 314, 424, 625, 754, 811, 864
AjnI	CCWGG	2 cut(s)	240, 777
AluBI	AGCT	3 cut(s)	572, 1180, 1204
AluI	AGCT	3 cut(s)	572, 1180, 1204
Alw26I	GTCTC	3 cut(s)	110, 440, 680
AlwI	GGATC	3 cut(s)	673, 815, 828
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	1 cut(s)	1159
ApeKI	GCWGC	1 cut(s)	960
ApoI	RAATTY	4 cut(s)	330, 359, 493, 984
ArsI	GACNNNNNNTTYG	2 cut(s)	1083, 1115
Asp700I	GAANNNNTTC	2 cut(s)	571, 987
AsuHPI	GGTGA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	820
BbvI	GCAGC	1 cut(s)	947
BccI	CCATC	4 cut(s)	95, 583, 646, 1016
BciT130I	CCWGG	2 cut(s)	242, 779
BclI	TGATCA	2 cut(s)	262, 388
BcoDI	GTCTC	3 cut(s)	110, 440, 680
BfaI	CTAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	1 cut(s)	961
BlsI	GCNGC	1 cut(s)	962
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	2 cut(s)	242, 779
BmiI	GGNNCC	2 cut(s)	23, 822
BmrFI	CCNGG	2 cut(s)	242, 779
BmsI	GCATC	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	452
BpuEI	CTTGAG	2 cut(s)	532, 1166
Bsa29I	ATCGAT	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	110
Bse1I	ACTGG	4 cut(s)	581, 600, 723, 808
Bse3DI	GCAATG	2 cut(s)	297, 862
BseBI	CCWGG	2 cut(s)	242, 779
BseCI	ATCGAT	1 cut(s)	343
BseGI	GGATG	1 cut(s)	911
BseMI	GCAATG	2 cut(s)	297, 862
BseNI	ACTGG	4 cut(s)	581, 600, 723, 808
BseRI	GAGGAG	1 cut(s)	1154
BseXI	GCAGC	1 cut(s)	947
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	1161
BshVI	ATCGAT	1 cut(s)	343
BsmAI	GTCTC	3 cut(s)	110, 440, 680
BsnI	GGCC	1 cut(s)	1161
Bso31I	GGTCTC	1 cut(s)	110
Bsp143I	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
BspANI	GGCC	1 cut(s)	1161
BspDI	ATCGAT	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	23, 822
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	3 cut(s)	673, 815, 828
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	297, 862
BsrI	ACTGG	4 cut(s)	581, 600, 723, 808
BssMI	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
Bst2UI	CCWGG	2 cut(s)	242, 779
Bst4CI	ACNGT	7 cut(s)	298, 454, 799, 890, 917, 1042, 1074
Bst6I	CTCTTC	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	911
BstKTI	GATC	6 cut(s)	47, 265, 391, 681, 823, 1112
BstMAI	GTCTC	3 cut(s)	110, 440, 680
BstMBI	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	242, 779
BstPAI	GACNNNNGTC	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	240, 777
BstV1I	GCAGC	1 cut(s)	947
BstX2I	RGATCY	2 cut(s)	678, 820
BstYI	RGATCY	2 cut(s)	678, 820
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	1161
BsuTUI	ATCGAT	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	911
BtsI	GCAGTG	2 cut(s)	163, 534
BtsIMutI	CAGTG	5 cut(s)	163, 534, 588, 804, 913
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	379
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	1 cut(s)	12
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	434, 619, 697
CviAII	CATG	8 cut(s)	13, 146, 382, 443, 553, 944, 971, 1009
CviJI	RGCY	8 cut(s)	417, 572, 703, 760, 960, 1161, 1180, 1204
CviKI_1	RGCY	8 cut(s)	417, 572, 703, 760, 960, 1161, 1180, 1204
CviQI	GTAC	3 cut(s)	434, 619, 697
DpnI	GATC	6 cut(s)	46, 264, 390, 680, 822, 1111
DpnII	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
DraI	TTTAAA	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	240, 777
FaeI	CATG	8 cut(s)	16, 149, 385, 446, 556, 947, 974, 1012
FalI	AAGNNNNNCTT	2 cut(s)	972, 1004
FatI	CATG	8 cut(s)	12, 145, 381, 442, 552, 943, 970, 1008
FbaI	TGATCA	2 cut(s)	262, 388
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	961
FokI	GGATG	1 cut(s)	918
Fsp4HI	GCNGC	1 cut(s)	961
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	1 cut(s)	961
HaeIII	GGCC	1 cut(s)	1161
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	8 cut(s)	16, 149, 385, 446, 556, 947, 974, 1012
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	6 cut(s)	161, 271, 345, 467, 1002, 1124
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	7 cut(s)	36, 49, 166, 270, 337, 769, 1001
Hpy188III	TCNNGA	5 cut(s)	13, 118, 870, 923, 1183
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	7 cut(s)	298, 454, 799, 890, 917, 1042, 1074
HpyCH4V	TGCA	8 cut(s)	69, 149, 290, 490, 733, 855, 878, 1089
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
Hsp92II	CATG	8 cut(s)	16, 149, 385, 446, 556, 947, 974, 1012
Ksp22I	TGATCA	2 cut(s)	262, 388
Kzo9I	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
Lsp1109I	GCAGC	1 cut(s)	947
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	134, 799
MalI	GATC	6 cut(s)	46, 264, 390, 680, 822, 1111
MboI	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
MboII	GAAGA	4 cut(s)	513, 782, 980, 1205
MflI	RGATCY	2 cut(s)	678, 820
MlyI	GAGTC	2 cut(s)	280, 476
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	4 cut(s)	921, 1027, 1132, 1151
MroXI	GAANNNNTTC	2 cut(s)	571, 987
MseI	TTAA	5 cut(s)	176, 497, 596, 605, 929
MspR9I	CCNGG	2 cut(s)	242, 779
MvaI	CCWGG	2 cut(s)	242, 779
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
NlaIII	CATG	8 cut(s)	16, 149, 385, 446, 556, 947, 974, 1012
NlaIV	GGNNCC	2 cut(s)	23, 822
NmeAIII	GCCGAG	1 cut(s)	936
NmuCI	GTSAC	2 cut(s)	134, 799
PagI	TCATGA	1 cut(s)	12
PdmI	GAANNNNTTC	2 cut(s)	571, 987
PfeI	GAWTC	4 cut(s)	161, 345, 1002, 1124
PfoI	TCCNGGA	1 cut(s)	777
PkrI	GCNGC	1 cut(s)	962
PleI	GAGTC	2 cut(s)	279, 475
PpsI	GAGTC	2 cut(s)	279, 475
PshAI	GACNNNNGTC	1 cut(s)	452
Psp6I	CCWGG	2 cut(s)	240, 777
PspGI	CCWGG	2 cut(s)	240, 777
PspN4I	GGNNCC	2 cut(s)	23, 822
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	2 cut(s)	678, 820
RsaI	GTAC	3 cut(s)	435, 620, 698
RsaNI	GTAC	3 cut(s)	434, 619, 697
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	5 cut(s)	176, 497, 596, 605, 929
SatI	GCNGC	1 cut(s)	961
Sau3AI	GATC	6 cut(s)	44, 262, 388, 678, 820, 1109
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	2 cut(s)	280, 476
ScrFI	CCNGG	2 cut(s)	242, 779
SetI	ASST	7 cut(s)	27, 207, 574, 634, 659, 1182, 1206
SfaNI	GCATC	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	511, 1181
SmoI	CTYRAG	2 cut(s)	511, 1181
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	240, 777
TaaI	ACNGT	7 cut(s)	298, 454, 799, 890, 917, 1042, 1074
TaqI	TCGA	6 cut(s)	61, 343, 372, 428, 549, 922
TatI	WGTACW	2 cut(s)	618, 696
TfiI	GAWTC	4 cut(s)	161, 345, 1002, 1124
Tru1I	TTAA	5 cut(s)	176, 497, 596, 605, 929
Tru9I	TTAA	5 cut(s)	176, 497, 596, 605, 929
TscAI	CASTG	5 cut(s)	163, 541, 588, 804, 920
TseFI	GTSAC	2 cut(s)	134, 799
TseI	GCWGC	1 cut(s)	960
Tsp45I	GTSAC	2 cut(s)	134, 799
TspDTI	ATGAA	7 cut(s)	29, 134, 141, 398, 655, 806, 959
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	5 cut(s)	163, 541, 588, 804, 920
XapI	RAATTY	4 cut(s)	330, 359, 493, 984
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	2 cut(s)	571, 987
XspI	CTAG	1 cut(s)	540
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.