Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003137.1

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

25604 .. 26050

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003137.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgtcatcggttcagcgccaatcgagctccggctccaacagatctgtggtggatgacaagaagaggaagaagatgcattctaatcgcgaatcagcctggcgatcgcggatgaagaagcagaagcgtagcatcaactccaaggacaaagcctacagcgagttggaggcctggaacaatgtcatgagggctcaggagaaggagttgactgatcgactttgctacttggagtcgattgaacagacttttgtggagttcagcggcgtctttgataaggacattaacaacatggctgagatgcatgactctctgctcgatccgtggcagcttccttactcgaagaagccgatcaccgcttcttctgctgatatgtttctcgattggccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

128

Amino Acids

15.0

Weight (kDa)

9.01

Isoelectric Point (pI)

66.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	87, 106
AciI	CCGC	3 cut(s)	106, 258, 351
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	2 cut(s)	95, 167
AluBI	AGCT	2 cut(s)	27, 325
AluI	AGCT	2 cut(s)	27, 325
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	165, 380
ApeKI	GCWGC	1 cut(s)	322
AsiSI	GCGATCGC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	382
BanII	GRGCYC	2 cut(s)	29, 190
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	2 cut(s)	97, 169
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	2 cut(s)	259, 323
BlsI	GCNGC	2 cut(s)	260, 324
Bme1390I	CCNGG	2 cut(s)	97, 169
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	97, 169
BmsI	GCATC	3 cut(s)	63, 138, 285
Bpu10I	CCTNAGC	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	138, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
BseBI	CCWGG	2 cut(s)	97, 169
BseDI	CCNNGG	2 cut(s)	138, 317
BseGI	GGATG	2 cut(s)	58, 114
BseMII	CTCAG	2 cut(s)	203, 282
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	2 cut(s)	87, 106
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	167, 382
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	167, 382
Bsp1286I	GDGCHC	2 cut(s)	29, 190
Bsp143I	GATC	5 cut(s)	41, 101, 208, 313, 345
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	3 cut(s)	106, 258, 351
BspANI	GGCC	2 cut(s)	167, 382
BspCNI	CTCAG	2 cut(s)	202, 283
BspFNI	CGCG	2 cut(s)	87, 106
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	138, 317
BssMI	GATC	5 cut(s)	41, 101, 208, 313, 345
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	97, 169
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	189, 291
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	58, 114
BstFNI	CGCG	2 cut(s)	87, 106
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	5 cut(s)	44, 104, 211, 316, 348
BstMBI	GATC	5 cut(s)	41, 101, 208, 313, 345
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 359
BstNI	CCWGG	2 cut(s)	97, 169
BstSCI	CCNGG	2 cut(s)	95, 167
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	2 cut(s)	87, 106
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	167, 382
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	58, 114
BtuMI	TCGCGA	1 cut(s)	87
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	18
CseI	GACGC	1 cut(s)	250
CviAII	CATG	4 cut(s)	181, 286, 299, 384
DdeI	CTNAG	2 cut(s)	189, 291
DpnI	GATC	5 cut(s)	43, 103, 210, 315, 347
DpnII	GATC	5 cut(s)	41, 101, 208, 313, 345
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	29, 190
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	95, 167
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	2 cut(s)	78, 300
EcoT38I	GRGCYC	2 cut(s)	29, 190
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	184, 289, 302, 387
FaiI	YATR	5 cut(s)	182, 287, 300, 368, 385
FatI	CATG	4 cut(s)	180, 285, 298, 383
Fnu4HI	GCNGC	2 cut(s)	259, 323
FokI	GGATG	2 cut(s)	65, 121
FriOI	GRGCYC	2 cut(s)	29, 190
Fsp4HI	GCNGC	2 cut(s)	259, 323
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	259, 323
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	167, 382
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	184, 289, 302, 387
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	89, 227, 302
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188III	TCNNGA	4 cut(s)	86, 181, 191, 374
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	76, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 359
HpyF3I	CTNAG	2 cut(s)	189, 291
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	184, 289, 302, 387
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	41, 101, 208, 313, 345
LmnI	GCTCC	2 cut(s)	32, 38
LpnPI	CCDG	6 cut(s)	43, 82, 109, 154, 176, 181
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	3 cut(s)	63, 138, 285
MalI	GATC	5 cut(s)	43, 103, 210, 315, 347
MboI	GATC	5 cut(s)	41, 101, 208, 313, 345
MboII	GAAGA	6 cut(s)	73, 79, 82, 124, 348, 349
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	29, 190
MlsI	TGGCCA	1 cut(s)	382
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	236, 296
MmeI	TCCRAC	2 cut(s)	60, 141
MnlI	CCTC	3 cut(s)	57, 157, 177
Mox20I	TGGCCA	1 cut(s)	382
Mph1103I	ATGCAT	2 cut(s)	78, 300
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	97, 169
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	97, 169
MvnI	CGCG	2 cut(s)	87, 106
MwoI	GCNNNNNNNGC	2 cut(s)	24, 359
NdeII	GATC	5 cut(s)	41, 101, 208, 313, 345
NlaIII	CATG	4 cut(s)	184, 289, 302, 387
NlaIV	GGNNCC	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	87
NsiI	ATGCAT	2 cut(s)	78, 300
PagI	TCATGA	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	260, 324
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	235, 296
PpsI	GAGTC	2 cut(s)	235, 296
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	95, 167
PspGI	CCWGG	2 cut(s)	95, 167
PspN4I	GGNNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	104
RgaI	GCGATCGC	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	259, 323
Sau3AI	GATC	5 cut(s)	41, 101, 208, 313, 345
SchI	GAGTC	2 cut(s)	236, 296
ScrFI	CCNGG	2 cut(s)	97, 169
SduI	GDGCHC	2 cut(s)	29, 190
SetI	ASST	2 cut(s)	29, 327
SfaAI	GCGATCGC	1 cut(s)	104
SfaNI	GCATC	3 cut(s)	63, 138, 285
SfcI	CTRYAG	1 cut(s)	151
SgfI	GCGATCGC	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	3 cut(s)	106, 258, 351
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	95, 167
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	6 cut(s)	23, 211, 230, 312, 335, 375
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
Zsp2I	ATGCAT	2 cut(s)	78, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.