Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009409.1

Orthogroup ID

OG0004651

Physical Location & Seq

Genomic Coordinates Reverse (-)

11895 .. 12167

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009409.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgtcatcggttcagcgccaatcgagctccgactccgacggatctgtggtggatgacaagaagaggaagaagatgcagtctaattgcgaatcggcctggcgaccgaggatgaagaagcagaagcgtgtggacgagctgacggaggagatcagtcagctccagatctcgaacagccaaatccggcagagcatcgacgccaatgacaaagcctacagtgaggtggaggcctggatcaatgtcatgagggctcaggagaaggagctgactgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006971 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

90

Amino Acids

10.42

Weight (kDa)

6.3

Isoelectric Point (pI)

72.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62420
fragaria_vesca	FvH4_5g39200
malus_domestica	MD03G1295200.v1.1 MD11G1314100.v1.1
prunus_persica	Prupe.8G267100_v2.0.a1
pyrus_communis	pycom03g23340
rosa_chinensis	RchiOBHm_Chr1g0328291 RchiOBHm_Chr6g0307471 RchiOBHm_Chr6g0307641 RchiOBHm_Chr7g0241461
rosa_laevigata	RLG00000000579
rosa_multiflora	Rmu_co8417033.1_g000001 Rmu_sc0003137.1_g000011 Rmu_sc0009409.1_g000004 Rmu_sc0040921.1_g000006
rosa_roxburghii	Rroxscaffold_3G00219120 Rroxscaffold_6G00416680
rosa_rugosa	Rorug06G0082800 Rorug06G0234700 Rorug07G0344000
rosa_samantha	Rh2AG364200 Rh2CG368500 Rh6BG354800 Rh6DG348200 Rh7AG498700 Rh7BG469300 Rh7CG515600 Rh7DG483400
rosa_wichuraiana	Rw1G012960 Rw4G035370 Rw7G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	49, 239
AcyI	GRCGYC	1 cut(s)	195
AjnI	CCWGG	2 cut(s)	95, 227
AluBI	AGCT	4 cut(s)	27, 136, 157, 262
AluI	AGCT	4 cut(s)	27, 136, 157, 262
Alw21I	GWGCWC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	49, 239
AoxI	GGCC	2 cut(s)	93, 225
AspLEI	GCGC	1 cut(s)	18
BanII	GRGCYC	2 cut(s)	29, 250
Bbv12I	GWGCWC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	97, 229
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	19
BglII	AGATCT	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	97, 229
BmrFI	CCNGG	2 cut(s)	97, 229
BmsI	GCATC	2 cut(s)	63, 198
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	97, 229
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	58, 114
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	95, 227
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	181
BsnI	GGCC	2 cut(s)	95, 227
Bsp1286I	GDGCHC	2 cut(s)	29, 250
Bsp143I	GATC	4 cut(s)	41, 147, 162, 231
BspANI	GGCC	2 cut(s)	95, 227
BspCNI	CTCAG	1 cut(s)	262
BspHI	TCATGA	1 cut(s)	240
BspPI	GGATC	2 cut(s)	49, 239
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	4 cut(s)	41, 147, 162, 231
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	97, 229
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	58, 114
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	44, 150, 165, 234
BstMBI	GATC	4 cut(s)	41, 147, 162, 231
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	97, 229
BstSCI	CCNGG	2 cut(s)	95, 227
BstSFI	CTRYAG	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	41, 162
BstYI	RGATCY	2 cut(s)	41, 162
BsuRI	GGCC	2 cut(s)	95, 227
BtsCI	GGATG	2 cut(s)	58, 114
BtsIMutI	CAGTG	1 cut(s)	220
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	18
CseI	GACGC	1 cut(s)	203
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	27, 95, 136, 157, 174, 209, 227, 248, 262
CviKI_1	RGCY	9 cut(s)	27, 95, 136, 157, 174, 209, 227, 248, 262
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	4 cut(s)	43, 149, 164, 233
DpnII	GATC	4 cut(s)	41, 147, 162, 231
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	29, 250
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	95, 227
EcoT38I	GRGCYC	2 cut(s)	29, 250
FaeI	CATG	1 cut(s)	244
FaiI	YATR	1 cut(s)	242
FatI	CATG	1 cut(s)	240
FokI	GGATG	2 cut(s)	65, 121
FriOI	GRGCYC	2 cut(s)	29, 250
GlaI	GCGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	95, 227
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	32, 89
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	31, 37
Hpy188III	TCNNGA	4 cut(s)	160, 166, 241, 251
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	2 cut(s)	41, 197
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	41, 147, 162, 231
LmnI	GCTCC	3 cut(s)	32, 162, 259
LpnPI	CCDG	7 cut(s)	82, 109, 173, 194, 214, 236, 241
LweI	GCATC	2 cut(s)	63, 198
MalI	GATC	4 cut(s)	43, 149, 164, 233
MboI	GATC	4 cut(s)	41, 147, 162, 231
MboII	GAAGA	4 cut(s)	73, 79, 82, 124
MflI	RGATCY	2 cut(s)	41, 162
MhlI	GDGCHC	2 cut(s)	29, 250
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	54, 60
MnlI	CCTC	6 cut(s)	57, 99, 136, 211, 217, 237
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	97, 229
MvaI	CCWGG	2 cut(s)	97, 229
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	4 cut(s)	41, 147, 162, 231
NlaIII	CATG	1 cut(s)	244
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	95, 227
PspGI	CCWGG	2 cut(s)	95, 227
PsuI	RGATCY	2 cut(s)	41, 162
SacI	GAGCTC	1 cut(s)	29
Sau3AI	GATC	4 cut(s)	41, 147, 162, 231
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	97, 229
SduI	GDGCHC	2 cut(s)	29, 250
SetI	ASST	5 cut(s)	29, 138, 159, 222, 264
SfaNI	GCATC	2 cut(s)	63, 198
SfcI	CTRYAG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	82
SseBI	AGGCCT	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	95, 227
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	23, 167, 192
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	2 cut(s)	54, 155
TspRI	CASTG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.