Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Forward (+)

10986434 .. 10990877

Gene Structure 4444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0082800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAGAGCATATTCCTCCGCCGAATTCGGATCCCGAGTTCAGGAGCGAGTTGACTCGGACCGGCGGCTCCAACCCGGCGTCGTCCTCCTTCGTTCCTCTTCGGACTTGCGCGCATGCAACACCGGGCACATCCACAGAGTGGACAGATGAGAAGCACAGATCGTATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCAGGCATTTGTGGGACTGCCATCCACAAAAGTATGTTCAGGGGATACATCCGTCAAAAGAGTTGCCTTTCAAGACTTATAATTCTTCTGACCAGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCCAAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTTACTATGGAAAGGCCCCGGATGGATCATATAGCGTCTTGTTATAAGGGGACCCACCTAAGAAGGAAACGGACCTCAGAACACTCGGGTGTAATCGCAAGAACTTCCGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTCGGGTCAGAACTTTGTGGTTGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGGTTTCAATGGCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006403 GO:0008150 GO:0008298 GO:0009507 GO:0009536 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051641 GO:0070727

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

5-FTHF_cyc-lig

Protein Analysis

234

Amino Acids

26.38

Weight (kDa)

8.27

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 435
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	20, 66, 378
AclI	AACGTT	1 cut(s)	390
AclWI	GGATC	3 cut(s)	26, 39, 423
AcsI	RAATTY	4 cut(s)	25, 172, 599, 670
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	42, 141
AgsI	TTSAA	2 cut(s)	283, 693
AjnI	CCWGG	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	477
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	1 cut(s)	589
AluI	AGCT	1 cut(s)	589
AlwI	GGATC	3 cut(s)	26, 39, 423
Ama87I	CYCGRG	2 cut(s)	35, 475
AoxI	GGCC	2 cut(s)	404, 696
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	4 cut(s)	25, 172, 599, 670
AspLEI	GCGC	2 cut(s)	113, 115
AspS9I	GGNCC	5 cut(s)	60, 405, 441, 462, 697
AsuC2I	CCSGG	3 cut(s)	77, 126, 409
AsuHPI	GGTGA	1 cut(s)	621
AvaI	CYCGRG	2 cut(s)	35, 475
AvaII	GGWCC	3 cut(s)	60, 441, 462
BaeGI	GKGCMC	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BamHI	GGATCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	240, 406
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	249
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	3 cut(s)	77, 126, 409
BfmI	CTRYAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	2 cut(s)	67, 540
BlsI	GCNGC	2 cut(s)	68, 541
Bme1390I	CCNGG	4 cut(s)	77, 126, 214, 409
Bme18I	GGWCC	3 cut(s)	60, 441, 462
BmeT110I	CYCGRG	2 cut(s)	35, 475
BmgT120I	GGNCC	5 cut(s)	60, 405, 441, 462, 697
BmiI	GGNNCC	6 cut(s)	33, 70, 407, 442, 443, 699
BmrFI	CCNGG	4 cut(s)	77, 126, 214, 409
BpuMI	CCSGG	3 cut(s)	77, 126, 409
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	350, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 141
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	350, 407
BseGI	GGATG	4 cut(s)	131, 232, 259, 417
BseLI	CCNNNNNNNGG	2 cut(s)	42, 141
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	347, 480
BseNI	ACTGG	1 cut(s)	304
BsePI	GCGCGC	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	406, 698
BsiHKCI	CYCGRG	2 cut(s)	35, 475
BsiSI	CCGG	4 cut(s)	63, 77, 125, 409
BslFI	GGGAC	2 cut(s)	239, 454
BslI	CCNNNNNNNGG	2 cut(s)	42, 141
BsmFI	GGGAC	2 cut(s)	239, 454
BsnI	GGCC	2 cut(s)	406, 698
BsoBI	CYCGRG	2 cut(s)	35, 475
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	5 cut(s)	31, 161, 339, 415, 649
BspACI	CCGC	3 cut(s)	20, 66, 378
BspANI	GGCC	2 cut(s)	406, 698
BspCNI	CTCAG	2 cut(s)	346, 479
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	6 cut(s)	33, 70, 407, 442, 443, 699
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	3 cut(s)	26, 39, 423
BsrDI	GCAATG	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	350, 407
BssHII	GCGCGC	1 cut(s)	111
BssMI	GATC	5 cut(s)	31, 161, 339, 415, 649
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	2 cut(s)	105, 643
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	113, 117
BstDEI	CTNAG	4 cut(s)	178, 333, 449, 466
BstF5I	GGATG	4 cut(s)	131, 232, 259, 417
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	113, 115
BstKTI	GATC	5 cut(s)	34, 164, 342, 418, 652
BstMBI	GATC	5 cut(s)	31, 161, 339, 415, 649
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	2 cut(s)	119, 516
BstSCI	CCNGG	4 cut(s)	75, 124, 212, 407
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	406, 698
BtsCI	GGATG	4 cut(s)	131, 232, 259, 417
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	2 cut(s)	113, 117
CfoI	GCGC	2 cut(s)	113, 115
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	5 cut(s)	60, 405, 441, 462, 697
CpoI	CGGWCCG	1 cut(s)	60
CseI	GACGC	2 cut(s)	69, 414
Csp6I	GTAC	1 cut(s)	205
CspI	CGGWCCG	1 cut(s)	60
CviAII	CATG	2 cut(s)	116, 513
CviJI	RGCY	6 cut(s)	69, 406, 589, 616, 626, 698
CviKI_1	RGCY	6 cut(s)	69, 406, 589, 616, 626, 698
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	4 cut(s)	178, 333, 449, 466
DpnI	GATC	5 cut(s)	33, 163, 341, 417, 651
DpnII	GATC	5 cut(s)	31, 161, 339, 415, 649
DraIII	CACNNNGTG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	105, 643
EarI	CTCTTC	2 cut(s)	105, 643
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	60, 441, 462
Eco88I	CYCGRG	2 cut(s)	35, 475
EcoO109I	RGGNCCY	2 cut(s)	405, 441
EcoRI	GAATTC	2 cut(s)	25, 599
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	2 cut(s)	119, 516
FaqI	GGGAC	2 cut(s)	239, 454
FatI	CATG	2 cut(s)	115, 512
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	67, 540
FokI	GGATG	4 cut(s)	118, 219, 246, 424
Fsp4HI	GCNGC	2 cut(s)	67, 540
GlaI	GCGC	2 cut(s)	112, 114
GluI	GCNGC	2 cut(s)	67, 540
HaeIII	GGCC	2 cut(s)	406, 698
HapII	CCGG	4 cut(s)	63, 77, 125, 409
HgaI	GACGC	2 cut(s)	69, 414
HhaI	GCGC	2 cut(s)	113, 115
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	119, 516
Hin6I	GCGC	2 cut(s)	111, 113
HinP1I	GCGC	2 cut(s)	111, 113
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	55, 383, 524
HpaII	CCGG	4 cut(s)	63, 77, 125, 409
HphI	GGTGA	1 cut(s)	621
Hpy166II	GTNNAC	2 cut(s)	54, 144
Hpy188I	TCNGA	8 cut(s)	31, 60, 105, 301, 336, 469, 499, 558
Hpy188III	TCNNGA	5 cut(s)	35, 43, 283, 320, 521
Hpy8I	GTNNAC	2 cut(s)	54, 144
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	100, 447
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	3 cut(s)	119, 512, 542
HpyF3I	CTNAG	4 cut(s)	178, 333, 449, 466
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	119, 516
HspAI	GCGC	2 cut(s)	111, 113
KflI	GGGWCCC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	31, 161, 339, 415, 649
LmnI	GCTCC	2 cut(s)	45, 74
Lsp1109I	GCAGC	1 cut(s)	526
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	5 cut(s)	33, 163, 341, 417, 651
MboI	GATC	5 cut(s)	31, 161, 339, 415, 649
MboII	GAAGA	5 cut(s)	17, 92, 288, 349, 630
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	6 cut(s)	25, 172, 200, 292, 599, 670
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	27, 97, 108, 475, 565, 575, 679
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	4 cut(s)	63, 77, 125, 409
MspR9I	CCNGG	4 cut(s)	77, 126, 214, 409
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	113
NciI	CCSGG	3 cut(s)	77, 126, 409
NdeII	GATC	5 cut(s)	31, 161, 339, 415, 649
NlaIII	CATG	2 cut(s)	119, 516
NlaIV	GGNNCC	6 cut(s)	33, 70, 407, 442, 443, 699
NspI	RCATGY	2 cut(s)	119, 516
OliI	CACNNNNGTG	1 cut(s)	477
PaeI	GCATGC	1 cut(s)	119
PauI	GCGCGC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	383, 524
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	68, 541
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	441
PsiI	TTATAA	2 cut(s)	291, 435
Psp1406I	AACGTT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	6 cut(s)	33, 70, 407, 442, 443, 699
PspPI	GGNCC	5 cut(s)	60, 405, 441, 462, 697
PspPPI	RGGWCCY	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	31
PteI	GCGCGC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	477
Rsr2I	CGGWCCG	1 cut(s)	60
RsrII	CGGWCCG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	2 cut(s)	67, 540
Sau3AI	GATC	5 cut(s)	31, 161, 339, 415, 649
Sau96I	GGNCC	5 cut(s)	60, 405, 441, 462, 697
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	4 cut(s)	77, 126, 214, 409
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	393, 450, 467, 591, 690
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	3 cut(s)	60, 441, 462
SmiMI	CAYNNNNRTG	1 cut(s)	477
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	6 cut(s)	25, 172, 200, 292, 599, 670
SsiI	CCGC	3 cut(s)	20, 66, 378
StyD4I	CCNGG	4 cut(s)	75, 124, 212, 407
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	596
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	319
TasI	AATT	6 cut(s)	25, 172, 200, 292, 599, 670
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	383, 524
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	3 cut(s)	298, 372, 592
TspGWI	ACGGA	2 cut(s)	252, 475
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	3 cut(s)	60, 441, 462
XapI	RAATTY	4 cut(s)	25, 172, 599, 670
XceI	RCATGY	2 cut(s)	119, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.