Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Reverse (-)

3392502 .. 3400164

Gene Structure 7663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G037100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGGAAACTAAAGAGTCCACGTCGAGTCCGCTGGCGCAAGCCGACTCTGAAGATGTTCCCAAGTCTCCGCCAAGCTCCCCCAACTCCTCCACTCGCGAGGCATGCTATGCAGTGCTCCAGAGTTGGGTCTCAAAGAAATTCATGACCGGATGCATGGTTCTCTTTCCTGTCGCTGTTACATTCTTCATCACTTGGTGGTTTGTTCAGTTTGTAGATGGTTTCTTCAGTCCAATATATGCCAGGCTTGGGGTTAGCATATTTGGCCTAGGATTTGTTACATCCCTTGCCTTTATATTCTTAGTCGGTATATTTGCTTCATCATGGATGGGTGCAACAGTTTTCTGGATTGGGGAATGGTTCATAAAACGAATGCCCTTTATGAAGCACATATACTCAGCCTCCAAACAAATTAGCTCTGCAATCTCTCCAGACCAAAATACCACTGCATTTAAAGAGGTTGCAATTATCCGTCATCCTCGGCTTGGTGAATATGCATTCGGTTTTATCACATCATCTGTAACCCTTCAGAGGGATGATGGAGATGAGGAGTTGTGTAGTGTTTATGTCCCAACAAACCATCTATACATTGGCGATATTTTTCTTGTCAATTCTGAAGAGATCATACGGCCAAATTTGTCCGTGCGTGAAGGGATAGAGATCATAATTTCAGTCGGTATGACGATGCCACAGGTGATATCTCCAATTGAAAGGATTCCTCCTCGTCAAAATGATAGGATACCGTTGAACAGAATAGTGTCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

256

Amino Acids

28.57

Weight (kDa)

5.67

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	5, 32, 71
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	140, 634
AcuI	CTGAAG	4 cut(s)	72, 211, 512, 636
AdeI	CACNNNGTG	1 cut(s)	198
AfiI	CCNNNNNNNGG	5 cut(s)	127, 249, 485, 531, 532
AgsI	TTSAA	2 cut(s)	710, 748
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	242
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	2 cut(s)	78, 417
AluI	AGCT	2 cut(s)	78, 417
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	72, 136
AoxI	GGCC	2 cut(s)	265, 629
ApoI	RAATTY	2 cut(s)	140, 634
Asp700I	GAANNNNTTC	2 cut(s)	57, 714
AspA2I	CCTAGG	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	500, 706
AvrII	CCTAGG	1 cut(s)	268
BarI	GAAGNNNNNNTAC	6 cut(s)	301, 333, 377, 409, 609, 641
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	4 cut(s)	212, 322, 533, 588
BceAI	ACGGC	1 cut(s)	644
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	732
BcoDI	GTCTC	2 cut(s)	72, 136
BfaI	CTAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	732
BlnI	CCTAGG	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	143, 675
BpmI	CTGGAG	2 cut(s)	104, 414
BsaBI	GATNNNNATC	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	268, 479
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 249, 485, 531, 532
Bse8I	GATNNNNATC	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	268, 479
BseGI	GGATG	5 cut(s)	158, 281, 333, 475, 541
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	5 cut(s)	127, 249, 485, 531, 532
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	3 cut(s)	79, 563, 711
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	267, 631
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	554, 745
BslI	CCNNNNNNNGG	5 cut(s)	127, 249, 485, 531, 532
BsmAI	GTCTC	2 cut(s)	72, 136
BsmFI	GGGAC	2 cut(s)	554, 745
BsmI	GAATGC	2 cut(s)	378, 497
BsnI	GGCC	2 cut(s)	267, 631
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	621, 660
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	3 cut(s)	5, 32, 71
BspANI	GGCC	2 cut(s)	267, 631
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	268, 479
BssMI	GATC	2 cut(s)	621, 660
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	340, 744
Bst6I	CTCTTC	1 cut(s)	612
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	36, 42, 106
BstDEI	CTNAG	2 cut(s)	301, 397
BstF5I	GGATG	5 cut(s)	158, 281, 333, 475, 541
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	624, 663
BstMAI	GTCTC	2 cut(s)	72, 136
BstMBI	GATC	2 cut(s)	621, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 110, 264
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	267, 631
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	5 cut(s)	158, 281, 333, 475, 541
BtsI	GCAGTG	2 cut(s)	120, 444
BtsIMutI	CAGTG	2 cut(s)	120, 444
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	36, 42, 106
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	40
CviAII	CATG	4 cut(s)	105, 145, 157, 324
CviJI	RGCY	8 cut(s)	44, 78, 247, 267, 401, 417, 484, 631
CviKI_1	RGCY	8 cut(s)	44, 78, 247, 267, 401, 417, 484, 631
DdeI	CTNAG	2 cut(s)	301, 397
DpnI	GATC	2 cut(s)	623, 662
DpnII	GATC	2 cut(s)	621, 660
DraI	TTTAAA	1 cut(s)	454
DraIII	CACNNNGTG	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
EciI	GGCGGA	2 cut(s)	20, 60
Eco130I	CCWWGG	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	699
Eco57I	CTGAAG	4 cut(s)	72, 211, 512, 636
EcoRII	CCWGG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	268
EcoT22I	ATGCAT	2 cut(s)	158, 499
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	4 cut(s)	108, 148, 160, 327
FaqI	GGGAC	2 cut(s)	554, 745
FatI	CATG	4 cut(s)	104, 144, 156, 323
FokI	GGATG	5 cut(s)	165, 268, 340, 462, 548
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	104, 414
HaeIII	GGCC	2 cut(s)	267, 631
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	108, 148, 160, 327
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	4 cut(s)	17, 28, 47, 715
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	500, 706
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	52, 531, 616
Hpy188III	TCNNGA	5 cut(s)	98, 121, 145, 346, 431
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	536, 644
HpyCH4III	ACNGT	2 cut(s)	340, 744
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	7 cut(s)	113, 156, 335, 422, 449, 464, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 110, 264
HpyF3I	CTNAG	2 cut(s)	301, 397
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	108, 148, 160, 327
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	621, 660
LmnI	GCTCC	2 cut(s)	83, 123
LpnPI	CCDG	9 cut(s)	20, 134, 163, 183, 229, 256, 331, 444, 677
LweI	GCATC	2 cut(s)	143, 675
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	178, 277, 520
MalI	GATC	2 cut(s)	623, 662
MboI	GATC	2 cut(s)	621, 660
MboII	GAAGA	4 cut(s)	65, 178, 217, 629
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	7 cut(s)	140, 411, 465, 610, 634, 666, 705
MlyI	GAGTC	3 cut(s)	26, 37, 41
MnlI	CCTC	9 cut(s)	94, 100, 412, 451, 489, 525, 541, 729, 732
Mph1103I	ATGCAT	2 cut(s)	158, 499
MroXI	GAANNNNTTC	2 cut(s)	57, 714
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	2 cut(s)	378, 497
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	105, 110, 264
NdeII	GATC	2 cut(s)	621, 660
NlaIII	CATG	4 cut(s)	108, 148, 160, 327
NmeAIII	GCCGAG	1 cut(s)	460
NruI	TCGCGA	1 cut(s)	99
NsiI	ATGCAT	2 cut(s)	158, 499
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	2 cut(s)	378, 497
PdmI	GAANNNNTTC	2 cut(s)	57, 714
PfeI	GAWTC	1 cut(s)	715
PleI	GAGTC	3 cut(s)	25, 36, 41
PpsI	GAGTC	3 cut(s)	25, 36, 41
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	2 cut(s)	621, 660
SchI	GAGTC	3 cut(s)	26, 37, 41
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	5 cut(s)	26, 80, 419, 462, 696
SfaNI	GCATC	2 cut(s)	143, 675
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	7 cut(s)	140, 411, 465, 610, 634, 666, 705
SsiI	CCGC	3 cut(s)	5, 32, 71
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	340, 744
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	26
TasI	AATT	7 cut(s)	140, 411, 465, 610, 634, 666, 705
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	120, 451
TspDTI	ATGAA	5 cut(s)	133, 178, 309, 352, 398
TspGWI	ACGGA	2 cut(s)	461, 631
TspRI	CASTG	2 cut(s)	120, 451
XapI	RAATTY	2 cut(s)	140, 634
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XmaJI	CCTAGG	1 cut(s)	268
XmnI	GAANNNNTTC	2 cut(s)	57, 714
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	2 cut(s)	158, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.