Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0002755

Physical Location & Seq

Genomic Coordinates Reverse (-)

141015 .. 149130

Gene Structure 8116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006223.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggcggaagctaaagagtcaacgtccagtccactcactcaacccgatcctgaagatttccccaagtctccgcccagctcccccaactcctccactcgcaaggcatgctatgcagtgctccagagttgggtctcaaagaagttcatgactggatgtatggttctctttcctgttgctgttactttcttcatcacttggtggtttattcagttcgtggatggtttcttcagtccattatatgcgaggcttggtattaatatatttggcctagggtttgttacatccctaatttttatgttcttagtcggtgtatttgcttcatcatggatgggtgcaactgttttctcggttggagagtggttcataaaacgaatgccctttatgaagcacatatactcagcatccaaacaaattagtgctgcaatttctccagaccaaaataccaccgcttttaaagaggttgcaattatccgtcatcctaggattggtgaatacgcgttcggttttatcacatcatctgtaatccttcagcgggatgatggagatgaggagctgtgcagtgtttatgtcccaacaaaccatctatacattggagatatttttttggtcaattccaaagagatcatacgaccgaatttgtcaattcgagaaggcatagagatcataatatcagttggtatgacaatgccacaggtgatttctccaattgaaagggttcctcttaacaggatggtatctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF502

Protein Analysis

247

Amino Acids

27.68

Weight (kDa)

6.83

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43130 AT1G43130 AT1G43130
fragaria_vesca	FvH4_1g23950 FvH4_1g23950 FvH4_1g23950 FvH4_2g13260 FvH4_2g13260 FvH4_2g13260
malus_domestica	MD05G1030200.v1.1 MD10G1030700.v1.1 MD15G1339500.v1.1
prunus_persica	Prupe.6G160000_v2.0.a1 Prupe.8G037100_v2.0.a1 Prupe.8G037100_v2.0.a1
pyrus_communis	pycom10g01990
rosa_chinensis	RchiOBHm_Chr2g0120081 RchiOBHm_Chr6g0274661
rosa_laevigata	RLG00000013531 RLG00000018511
rosa_multiflora	Rmu_sc0000593.1_g000013 Rmu_sc0004679.1_g000003 Rmu_sc0006223.1_g000030
rosa_roxburghii	Rroxscaffold_2G00123760 Rroxscaffold_7G00194080
rosa_rugosa	Rorug02G0226000 Rorug02G0226100 Rorug02G0226200 Rorug02G0226300 Rorug06G0082800 Rorug06G0082800
rosa_samantha	Rh2AG283100 Rh2BG294400 Rh2DG308100 Rh6BG202500 Rh6CG202900 Rh6DG194600
rosa_wichuraiana	Rw2G022670 Rw6G017290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	497
AciI	CCGC	4 cut(s)	5, 71, 447, 532
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	3 cut(s)	72, 211, 512
AdeI	CACNNNGTG	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	127, 485, 532
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	710
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	3 cut(s)	11, 78, 553
AluI	AGCT	3 cut(s)	11, 78, 553
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	72, 136
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	634
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	714
AspA2I	CCTAGG	2 cut(s)	268, 479
AsuHPI	GGTGA	2 cut(s)	500, 706
AvrII	CCTAGG	2 cut(s)	268, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	5 cut(s)	212, 322, 533, 588, 724
BcoDI	GTCTC	2 cut(s)	72, 136
BfaI	CTAG	2 cut(s)	269, 480
BisI	GCNGC	1 cut(s)	420
BlnI	CCTAGG	2 cut(s)	268, 479
BlsI	GCNGC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	717
BmsI	GCATC	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	104, 414
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	268, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 485, 532
Bse1I	ACTGG	2 cut(s)	27, 154
BseDI	CCNNGG	2 cut(s)	268, 479
BseGI	GGATG	8 cut(s)	158, 223, 281, 333, 401, 475, 541, 735
BseLI	CCNNNNNNNGG	3 cut(s)	127, 485, 532
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	27, 154
BseRI	GAGGAG	2 cut(s)	79, 563
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	632
BshFI	GGCC	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	3 cut(s)	127, 485, 532
BsmAI	GTCTC	2 cut(s)	72, 136
BsmFI	GGGAC	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	46, 621, 660
BspACI	CCGC	4 cut(s)	5, 71, 447, 532
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	717
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	27, 154
BssECI	CCNNGG	2 cut(s)	268, 479
BssMI	GATC	3 cut(s)	46, 621, 660
BssT1I	CCWWGG	2 cut(s)	268, 479
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	2 cut(s)	105, 110
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	301, 397
BstF5I	GGATG	8 cut(s)	158, 223, 281, 333, 401, 475, 541, 735
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	3 cut(s)	49, 624, 663
BstMAI	GTCTC	2 cut(s)	72, 136
BstMBI	GATC	3 cut(s)	46, 621, 660
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 110
BstNSI	RCATGY	1 cut(s)	108
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	8 cut(s)	158, 223, 281, 333, 401, 475, 541, 735
BtsI	GCAGTG	2 cut(s)	120, 565
BtsIMutI	CAGTG	2 cut(s)	120, 565
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	1 cut(s)	144
CviAII	CATG	3 cut(s)	105, 145, 324
CviJI	RGCY	5 cut(s)	11, 78, 247, 267, 553
CviKI_1	RGCY	5 cut(s)	11, 78, 247, 267, 553
DdeI	CTNAG	2 cut(s)	301, 397
DpnI	GATC	3 cut(s)	48, 623, 662
DpnII	GATC	3 cut(s)	46, 621, 660
DraI	TTTAAA	1 cut(s)	454
DraIII	CACNNNGTG	1 cut(s)	198
EciI	GGCGGA	2 cut(s)	20, 60
Eco130I	CCWWGG	2 cut(s)	268, 479
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	3 cut(s)	72, 211, 512
EcoT14I	CCWWGG	2 cut(s)	268, 479
ErhI	CCWWGG	2 cut(s)	268, 479
FaeI	CATG	3 cut(s)	108, 148, 327
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	3 cut(s)	104, 144, 323
FauI	CCCGC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	7 cut(s)	165, 230, 268, 340, 388, 462, 548
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	2 cut(s)	269, 480
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	104, 414
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	108, 148, 327
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	500, 706
Hpy166II	GTNNAC	2 cut(s)	21, 32
Hpy188III	TCNNGA	5 cut(s)	50, 121, 145, 431, 647
Hpy8I	GTNNAC	2 cut(s)	21, 32
HpyAV	CCTTC	2 cut(s)	536, 644
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	113, 335, 422, 464, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 110
HpyF3I	CTNAG	2 cut(s)	301, 397
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	108, 148, 327
Kzo9I	GATC	3 cut(s)	46, 621, 660
LmnI	GCTCC	3 cut(s)	83, 123, 550
LpnPI	CCDG	9 cut(s)	40, 63, 88, 134, 135, 183, 444, 677, 712
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	2 cut(s)	269, 480
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	178, 277
MalI	GATC	3 cut(s)	48, 623, 662
MboI	GATC	3 cut(s)	46, 621, 660
MboII	GAAGA	3 cut(s)	65, 178, 217
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	8 cut(s)	288, 411, 423, 465, 610, 634, 642, 705
MluI	ACGCGT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	100, 237, 451, 541, 729
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	3 cut(s)	255, 453, 723
MspA1I	CMGCKG	1 cut(s)	532
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	378
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	105, 110
NdeII	GATC	3 cut(s)	46, 621, 660
NlaIII	CATG	3 cut(s)	108, 148, 327
NlaIV	GGNNCC	1 cut(s)	717
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	714
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	717
SaqAI	TTAA	3 cut(s)	255, 453, 723
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	46, 621, 660
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	6 cut(s)	13, 26, 80, 462, 555, 696
SfaNI	GCATC	1 cut(s)	410
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	8 cut(s)	288, 411, 423, 465, 610, 634, 642, 705
SsiI	CCGC	4 cut(s)	5, 71, 447, 532
SspMI	CTAG	2 cut(s)	269, 480
StyI	CCWWGG	2 cut(s)	268, 479
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	646
TaqII	GACCGA	1 cut(s)	646
TasI	AATT	8 cut(s)	288, 411, 423, 465, 610, 634, 642, 705
Tru1I	TTAA	3 cut(s)	255, 453, 723
Tru9I	TTAA	3 cut(s)	255, 453, 723
TscAI	CASTG	2 cut(s)	120, 565
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	5 cut(s)	133, 178, 309, 352, 398
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	120, 565
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XmaJI	CCTAGG	2 cut(s)	268, 479
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	2 cut(s)	269, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.